Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0000420 | OGI:02000620 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:225471-228962 | ||||||||
| Gene Symbol | MSL08, OsMSL08, MSL8 | ||||||||||
| DNA seq | TCCTGATCACATTCACATCTAGCATTGCAGGGACAAATTATAAACCACAATAATCCTCCTCCTTGAACAGTGAGAGATGATGAGTAGGAGCTGATTAATAAGCTAATCTGTTGTAGATGATCATATCATATATAAGCGAAAAAGCAGTACTCACTAATTAACATGTAAGGATTAAGGAATAATGGATATAGCTAAGAGAGACCAACAGAAGCAACAAAAGAAGAAAAATGCTGTGACTTGTGAGCCCAGCCAAGCTATCACTATCTCTCTCTCTCTCTCTTTGTGCAGATGAGAATGAGAGGAGACGATGAGACGAGAGAGAGAGAGCTATTAAGCAGCAGAAGAAGCTTAATTGCATGGCTAATGATGAGAAGGAAGGAGAGAGAGCAATAAGCACTAAACTAGTTAATTAATGGCCGTCATGGCTCTCATCCACTTGGTCGTCATGATCATCGGTCGCTCTCCCAACGCCAACGCCAACGTCTTCCTCGTCGCCGTCGCCGTCGCCATCATGGTGCGCCTCGTCGCCGTCGTCCTTCGTCCTCCCTTCCTCGTTCTGCTCCCCGTCGAACGGGAAACCCGGCGGCGCGCACCGCACGTCTGGGTACTTCACCACCGCGTCCAGCAGCTCCGAGCTGCCCTTCGCCTCCTCCCCGCCATTGCCGCCCGCCGAGGACGACCCACCACCGCCGCCGGAGCCGGAGCGGGAGTAGAGGCGGTCGAGCTCGTCGAAGTAGGGGCACGTCTTGGCGTGCGCCGGCCGCTTCTTGCCGCTCTCCTTGGCCTTGCGGAAGTACTTGTTGATGTTCTCCCACTTCTCCTTGCACCGCTTCGCGTTCCGCCGGTAGCCCGCCGCCGCCATGCGCGCGCTCACCTCCTCCCACAGGGGGCCCTTCAGCCCTGGCTCCTGGAACCTATCCTCCAGCCCCGTCCGCACCCGGATCAGCGCCTCCACCTCGTGCTTCGGCCACCGCGACGAGCTCAGCTGCAGCGACCCCTCGCCGTCGTACGCCACCACCTCCTTCCCCACGCCGTCCTGCTCGTCGGCGCCCGGAGCGGGGTTGGCGGCGGGGGGTGGGAGCGTGATGGTCTCGCCGGAGATCTTTTCCAGGTAGGCGATGATGGCGGACTCGCGTGCAGCGGCGCTGGCGCGGTCCTGCGCGCGCGCGGCGGCCTCGCGCGCGAACTTGTCGGCCTCCTGGCGGCGCCACGCCTCGTCGCGGGCGGCGCGCTCCCGCTCCCGGCGCTCCATGGTGTCGAGGAACTGACGGTGGAGGCTCTCCTGGTGCTCCATGAGGCGCTGCACCAGGCGCTCGAAGAAGGAGGCCGACGCGCTGAGCTGCTCCTGGCGCCGCCGCTTGCGCTTGCGGCGCGCCGCGTCCGCCCCCGACGGCTGCTGCGTCTGCGGCTGCGGCTGCACCACGGCGTGCGCGTCCTCCCCGGCAGACGTCTCGGACGTGTTGAGGTGCGGCGGGTTGGCGGCGGCGGCGTCGGGGAGGTCAGCCATGGGCGGCGCGAGCATGGCATTGTCGTCCCCGGTGAGGCCGGAGCCGGAGCCCGTCTGGGGGCCTCCGCTGCCGGGCTTGTAGATGGCCTCCAGCTCGCTGAAGAGCTTGTAGTTGACGGCGCCAGCGGAGGCGGCATTGTCGTCGGGCTTATTCTTGAAGTAATTCGCTGGGGGCGGCGGCGCAGGGGAGTCGGGAGTGGCGGGTTTGTCCTTGGGCGGCGCCCTCTTGCTGCTGCTGCTGCTGTGTATGTAGTCGATGTCGAGTGGCCGCCTGCACAGCAAATCCAACAAAACAAAATCAATGTCAGCAACAGCTCGCTCCACAGCTAATTAATCTGCACAATTTGGCTGCAGCTCTGTTGCTAATTGATTTGCAAGAAGAATATGGCGTGCGGGCGGGGCGGGGCGGCGAGGAAGAAGAAGAAGAAATGATGAGTGCATGCAATGGCGAATTGAGGGGGGCGGTTGGGTTGGCTTGGCGCTTTTTGGTGAGTGAGGTAATCATCAAGTCGAAAAAGGGGGAGACGAAAAGGTGATAGCTTTGCGTTGTTGTGGATGTGGCTGTGAATTCTGTTGATGGAGAAGAAGAAGATGAGATGAGAGGAGGAATCGCGACGCATCCATCATCATCATCTGTGTGCTGTGCATAAATCAGAGAGGGAGGAGGACCCTGCGCTTGCGAGCGATGGCTCCCTTTCTCAATCATGACACTATTATTGGCCGTCCTCTGCTCCCCTCTCCCGAGCAAAGAGAGCATCCTAAGCAAAAAAAGCTCTCCTCCTTTTCCTCTCTGTTCTTCTCTTCTCCACCATGGATGGATGCATGAATCCACTCCAAGCACGCACTCACTCACTCCAATTTCAACTCAATTTTAGGCTGAGTAAGGATAACTTGTACGTACCAGGTCGGTTCTTTGATGGAAGTTTCCTCGTCCCCCGGCCACCGCCGGAGCCTGCTCTCCGTGGCCGCCTCGTCATCCCCGCCACCACCTCCTCCTCCTCCTCCATGAAGCATCATGCCGCTGCCCGCGCCGCCCCCGTCGTTCAGCGCGTCGTCCGTTCCGCCGGTGGCGCCGCTGCCGCCGCCGCCGTCGACCCCCAGCTTGAAGCTCATGGCGGCGGCCAGGAACGGAGGGACGCCCGGAGGGGCGGCGGCGCCGGAGGCAGCGCTCCCGGCGCCGGCACCGGAGCTCTCCGGAACGGCCGCCTCGACGTCGAGGCCGAGATGGTGGTGCGGGTGGTGGTGGTGGTGGTGCTGCGGGGCCCACCTAGCCGGGGGCGGTGGCTGCTGCTGGTGCTTCTGGTGGTGGTGCTGCTCGTGGAAGAGCTGGAGGTGGGGGTGGTGGCCGGCGGCGGCCGCCTGGTGGAGCAGCTGCTGCGTGAAGGGAATCCCACCGGCGCCGCCGAAGTGCGCCAAGTGGGGAGGCATCTGAGGCGGCGGGTGGTGGTGGTGGTGGTGCTGAGGCAGGGCGTGGTGGTGCAGCGGCTGGTACCTGAACGGCGCGCCCAGCTCCTGGCCACCGGCCGCCGCCGCCGCGGCAGCAGCAGCGGCAGCGGCCGCCTGGGCGGGCTGCGGCGGCGCGGACATGGCGAAGGCGCCGGGGTCCATGATGTACTGCTGGAACTCAGAGACGCCGCCGTAGCCGGACTGCATGGCGCCTGCCTGCAGCTTGCTACTCCACTATCTTCACCTAGCTTGCTACCGAGTAGAGAGTGTCACTCACCTTCACTTCACCTAGTTCGCTGCATCAAGTGGTTTACATGCCGGTCGGGTAATTAAGAAGGTTTGACCTGAGCTAAGGAAGAAAATGCAGCCAGCCAAAAATCTCACTCACCCCTCACAACGGTCTGAGCTGGAGCTGGAGCTGGAGGTGGAAGAAGAGGATGAGGCAGGGCAGTGCAGAGTGCAGGGGTGAAGAGAGGAGGAAGGAAGAAGGGAGAGGGTAGCACAGGCACAGGGAAGGTAGTCAGGTTTGGTTTCCATTT
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| CDS seq | ATGCAGTCCGGCTACGGCGGCGTCTCTGAGTTCCAGCAGTACATCATGGACCCCGGCGCCTTCGCCATGTCCGCGCCGCCGCAGCCCGCCCAGGCGGCCGCTGCCGCTGCTGCTGCCGCGGCGGCGGCGGCCGGTGGCCAGGAGCTGGGCGCGCCGTTCAGGTACCAGCCGCTGCACCACCACGCCCTGCCTCAGCACCACCACCACCACCACCCGCCGCCTCAGATGCCTCCCCACTTGGCGCACTTCGGCGGCGCCGGTGGGATTCCCTTCACGCAGCAGCTGCTCCACCAGGCGGCCGCCGCCGGCCACCACCCCCACCTCCAGCTCTTCCACGAGCAGCACCACCACCAGAAGCACCAGCAGCAGCCACCGCCCCCGGCTAGGTGGGCCCCGCAGCACCACCACCACCACCACCCGCACCACCATCTCGGCCTCGACGTCGAGGCGGCCGTTCCGGAGAGCTCCGGTGCCGGCGCCGGGAGCGCTGCCTCCGGCGCCGCCGCCCCTCCGGGCGTCCCTCCGTTCCTGGCCGCCGCCATGAGCTTCAAGCTGGGGGTCGACGGCGGCGGCGGCAGCGGCGCCACCGGCGGAACGGACGACGCGCTGAACGACGGGGGCGGCGCGGGCAGCGGCATGATGCTTCATGGAGGAGGAGGAGGAGGTGGTGGCGGGGATGACGAGGCGGCCACGGAGAGCAGGCTCCGGCGGTGGCCGGGGGACGAGGAAACTTCCATCAAAGAACCGACCTGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGAATTACTTCAAGAATAAGCCCGACGACAATGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGGCCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTGCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAA
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| Protein seq | MQSGYGGVSEFQQYIMDPGAFAMSAPPQPAQAAAAAAAAAAAAAGGQELGAPFRYQPLHHHALPQHHHHHHPPPQMPPHLAHFGGAGGIPFTQQLLHQAAAAGHHPHLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHPHHHLGLDVEAAVPESSGAGAGSAASGAAAPPGVPPFLAAAMSFKLGVDGGGGSGATGGTDDALNDGGGAGSGMMLHGGGGGGGGGDDEAATESRLRRWPGDEETSIKEPTWRPLDIDYIHSSSSSKRAPPKDKPATPDSPAPPPPANYFKNKPDDNAASAGAVNYKLFSELEAIYKPGSGGPQTGSGSGLTGDDNAMLAPPMADLPDAAAANPPHLNTSETSAGEDAHAVVQPQPQTQQPSGADAARRKRKRRRQEQLSASASFFERLVQRLMEHQESLHRQFLDTMERRERERAARDEAWRRQEADKFAREAAARAQDRASAAARESAIIAYLEKISGETITLPPPAANPAPGADEQDGVGKEVVAYDGEGSLQLSSSRWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKRPAHAKTCPYFDELDRLYSRSGSGGGGGSSSAGGNGGEEAKGSSELLDAVVKYPDVRCAPPGFPFDGEQNEEGRTKDDGDEAHHDGDGDGDEEDVGVGVGRATDDHDDQVDESHDGH |
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| Function | Trihelix transcription factor GT-2 [UniProtKB/Swiss-Prot:Q39117] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0000420 | OsKeNa_02g0000420.01 | Chr02 | 225471 | 228962 | - | NAM | ||
| CDS seq | ATGCAGTCCGGCTACGGCGGCGTCTCTGAGTTCCAGCAGTACATCATGGACCCCGGCGCCTTCGCCATGTCCGCGCCGCCGCAGCCCGCCCAGGCGGCCGCTGCCGCTGCTGCTGCCGCGGCGGCGGCGGCCGGTGGCCAGGAGCTGGGCGCGCCGTTCAGGTACCAGCCGCTGCACCACCACGCCCTGCCTCAGCACCACCACCACCACCACCCGCCGCCTCAGATGCCTCCCCACTTGGCGCACTTCGGCGGCGCCGGTGGGATTCCCTTCACGCAGCAGCTGCTCCACCAGGCGGCCGCCGCCGGCCACCACCCCCACCTCCAGCTCTTCCACGAGCAGCACCACCACCAGAAGCACCAGCAGCAGCCACCGCCCCCGGCTAGGTGGGCCCCGCAGCACCACCACCACCACCACCCGCACCACCATCTCGGCCTCGACGTCGAGGCGGCCGTTCCGGAGAGCTCCGGTGCCGGCGCCGGGAGCGCTGCCTCCGGCGCCGCCGCCCCTCCGGGCGTCCCTCCGTTCCTGGCCGCCGCCATGAGCTTCAAGCTGGGGGTCGACGGCGGCGGCGGCAGCGGCGCCACCGGCGGAACGGACGACGCGCTGAACGACGGGGGCGGCGCGGGCAGCGGCATGATGCTTCATGGAGGAGGAGGAGGAGGTGGTGGCGGGGATGACGAGGCGGCCACGGAGAGCAGGCTCCGGCGGTGGCCGGGGGACGAGGAAACTTCCATCAAAGAACCGACCTGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGAATTACTTCAAGAATAAGCCCGACGACAATGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGGCCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTGCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAA
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| Protein seq | MQSGYGGVSEFQQYIMDPGAFAMSAPPQPAQAAAAAAAAAAAAAGGQELGAPFRYQPLHHHALPQHHHHHHPPPQMPPHLAHFGGAGGIPFTQQLLHQAAAAGHHPHLQLFHEQHHHQKHQQQPPPPARWAPQHHHHHHPHHHLGLDVEAAVPESSGAGAGSAASGAAAPPGVPPFLAAAMSFKLGVDGGGGSGATGGTDDALNDGGGAGSGMMLHGGGGGGGGGDDEAATESRLRRWPGDEETSIKEPTWRPLDIDYIHSSSSSKRAPPKDKPATPDSPAPPPPANYFKNKPDDNAASAGAVNYKLFSELEAIYKPGSGGPQTGSGSGLTGDDNAMLAPPMADLPDAAAANPPHLNTSETSAGEDAHAVVQPQPQTQQPSGADAARRKRKRRRQEQLSASASFFERLVQRLMEHQESLHRQFLDTMERRERERAARDEAWRRQEADKFAREAAARAQDRASAAARESAIIAYLEKISGETITLPPPAANPAPGADEQDGVGKEVVAYDGEGSLQLSSSRWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKRPAHAKTCPYFDELDRLYSRSGSGGGGGSSSAGGNGGEEAKGSSELLDAVVKYPDVRCAPPGFPFDGEQNEEGRTKDDGDEAHHDGDGDGDEEDVGVGVGRATDDHDDQVDESHDGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.065100 | 0.751506 | 1.341179 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0104500 | RBH | 0.141333 | 0.041811 | 1.238280 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g01380 | RBH | 0.000000 | 0.0 | 0.179966 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0104500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000390 | RBH | 0.0 | 0.0 | 3.576256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000390 | RBH | 0.0 | 0.000000 | 2.718847 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000390 | RBH | 0.0 | 0.125165 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000390 | RBH | 0.0 | 2.366755 | 5.376395 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0003800 | RBH | 8.408563 | 2.7962625 | 43.232735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000390 | RBH | 0.0 | 0.055025 | 0.510575 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0004200 | RBH | 7.469869 | 1.425363 | 48.192585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000390 | RBH | 0.000000 | 0.041684 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000370 | RBH | 0.0 | 1.035316 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000380 | RBH | 0.0 | 6.472919 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000380 | RBH | 0.505001 | 0.000000 | 0.993452 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000390 | RBH | 0.059750 | 4.086213 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000360 | RBH | 0.0 | 2.419364 | 3.308903 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000390 | RBH | 0.326070 | 0.000000 | 2.013179 |
