Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0048550 | OGI:01126620 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:43308588-43311900 | ||||||||
| Gene Symbol | OsPP17 | ||||||||||
| DNA seq | tacatagtgacaaactgatggatgacgatcactaatttgctctcaaaatccaaagacttgccaaaggaacgctttacaaatagggcagttcaatacgatgctgcaatcaaaattgtgattctcacttgcatgtgttctctgttatataaatatatgtactaccgcagaacgaaaatactgaatgaacgagatggaatggatctttcttctgccgcggtgaagatggacatacattcaaagtccaaagctgaaagcaaacaagtccggctctcattgcacagggctacctccagcttcaaactctccaaagccctctctagcacatagtacaacggagacttgagaggcggagggagatgctgcaaaataaaaggaaggatatgagatataatcatctcaagccatgtttcaaaaaaaaattgcttgagtttcatccactgaaagattaagcaatggtacctgaagttatgcagctcccaggtttcgccaactgcataggagtaatatgatcaatatttgcattcctgagctcatgcaaaggtacaagtctatccgtacatattatagaatcaaaattaatatgctccaccctttaaccagccaagataccatggattattcactcagaaaacctctatgatcttcatcatttctgtgtaagcgttgaagcaccatcaccacccctcagtgaaagtaatgggccaccatagaatctcttgccaactagagcagagtccaggaatagtactacaacagtaatatcatcgtgaaagtgtctcctgaccccgcgatcaatctttttcaagtctgagtacctcatttctcttttttttgctgcctctcgcagagccgcttttattagtcttcttgcaataccctacagttttttggggggcaaaagttagcaacaagatgttagcatcagaacattcagagcacgcagcgattataaagaaaaggggatcacggttgcaaaatatgaacatgagacatgtgaagatctacctgagcaaggcaaattcactttgcccgagatactatactcgattctacaaagatacaacaaaactcaaaagacacaacaataaagcaaaccctggataaacataagtcaatgaattaattcagaaaacagagtgaactcaggggaaagcgcacagttaatctggtttgaaacaagaacttaaggaactgatcagcgaatggaacttataaattcaaaagatattaattccattagagctaaatatatggcttgaagcatctgaagcaacatcatgttatgtgtgacccagcacagatgttgttgaatatccctaggatgtttgctgttctaacaaataaactcagcacgtctgacataacaattaatgttgattcttcttaaatttcaacgataaagacatgactgacatggaaactaattcagaactccacgaaaaaaaattattgtcagagaaagttaggatatcatcttacatttcttggcgaacagttaactatatccacagcctcctgattggtcaggtgctcccatagcccatctgaggcaaatatcacaaattggtcttctgtacacagtttatgtacttctatggatggttctggagaaagaattggtttgtggaagggttctgaaagccggaatctcgccaaaagaggctcttggttaaattcagtactttttaggtaagcatcgcctaacgttctggaaacctgagcacatcacaaattggcaaggcaaaaggtatgagtacttgcgctattatatggtaaaggtgagcaatattgtgaaacgtcacaaattgtgcacccactcagttaataaaccggagtgcggtgcacatggaataatattttgaggcacaatctgtcatacagaagtgatcaaagtgaaacaaatactacctgaataaggcctttgacacgccaaacgttgtgctttaggaccacgattcgtggatcgtctgggtgaaactgtcttaattcctcccttacagactcaatgcttgcgttatgctcggctgacagctgaaccgccttaataacacccctttcaagtctccctagaacagcacgggaatcaccagtatttgctacataaagaactccttcattgatgatgccaaccaaacagcaggaaccaacggaggcaagctgcggtttgatgagccattgcttccttacaagattgagaaacccttcctccgtggcagcataggatttgcgaatgacatcaactgaaacagtttgctgttccgtagcaaattctgcagggaagcaacatactctttagattgtagtagtagtagtagtattgagagaaatagaggaatgaacatactctttagattggggaagaaatgttgtgcgatgaaatgagcagtctccgggccaccatggccatcgtagatgccgacaaaagtggtggaggaggagtgggagagaagaagaggggcagcttcgacctggctggcatcctcgagaaggttgtttgcctgcacgagggccatggagaagtcgccgcaagcgtgcctcccggtgtccttgtaccagagcaatccatccctggtgccgccgacggcgagctggtggtcgggcttgaagcaggggcgcacaatccgcatgaccgtctgcccaaccatgttgcacttgcaccaggaaacctaggtagtaagaaagatccaaggaggagaggcttgacgaagaagatggaggaggctatcgatcaagattgcaagaagcaggagcttggtggtcaagggattgggcgttggggtctggccccaagaaagaagaagaaattaagaggcggtgcatgagaaggaagagaatcttgcggcgtgaaatcggggttgattgctttggctttggcttggccccaaataaagggaggaattgaagggtagtaacaaagAaaaaaaaacacacgaaaacgaaagagaagaatcccaaatccaaatcaaatcgggcggaattcctccgcctgcaggctgctgctatgctattcctctccctccctccctcctatcctaattcatactcatactgctgtgctggagtagaggagaagagagaagcggagtgccgtggccagatcgacgacgaatcgcgtgggattgattccgccgtgagatttctccaacttctttctttaggattaggattaggattggaagagagggggaaggaggaaggagtatctatctatcccatgtgacctgcaacaacaagaagaaggagaaggagaagggaggggaggtcgtttgattattagtatggattataattagcaacagcaactactacttgt
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| CDS seq | atggttgggcagacggtcatgcggattgtgcgcccctgcttcaagcccgaccaccagctcgccgtcggcggcaccagggatggattgctctggtacaaggacaccgggaggcacgcttgcggcgacttctccatggccctcgtgcaggcaaacaaccttctcgaggatgccagccaggtcgaagctgcccctcttcttctctcccactcctcctccaccacttttgtcggcatctacgatggccatggtggcccggagactgctcatttcatcgcacaacatttcttccccaatctaaagaaatttgctacggaacagcaaactgtttcagttgatgtcattcgcaaatcctatgctgccacggaggaagggtttctcaatcttgtaaggaagcaatggctcatcaaaccgcagcttgcctccgttggttcctgctgtttggttggcatcatcaatgaaggagttctttatgtagcaaatactggtgattcccgtgctgttctagggagacttgaaaggggtgttattaaggcggttcagctgtcagccgagcataacgcaagcattgagtctgtaagggaggaattaagacagtttcacccagacgatccacgaatcgtggtcctaaagcacaacgtttggcgtgtcaaaggccttattcaggtttccagaacgttaggcgatgcttacctaaaaagtactgaatttaaccaagagcctcttttggcgagattccggctttcagaacccttccacaaaccaattctttctccagaaccatccatagaagtacataaactgtgtacagaagaccaatttgtgatatttgcctcagatgggctatgggagcacctgaccaatcaggaggctgtggatatagttaactgttcgccaagaaatggtattgcaagaagactaataaaagcggctctgcgagaggcagcaaaaaaaagagaaatgaggtactcagacttgaaaaagattgatcgcggggtcaggagacactttcacgatgatattactgttgtagtactattcctggactctgctctagttggcaagagattctatggtggcccattactttcactgaggggtggtgatgcatctccctccgcctctcaagtctccgttgtactatgtgctagagagggctttggagagtttgaagctggaggtagccctgtgcaatga
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| Protein seq | MVGQTVMRIVRPCFKPDHQLAVGGTRDGLLWYKDTGRHACGDFSMALVQANNLLEDASQVEAAPLLLSHSSSTTFVGIYDGHGGPETAHFIAQHFFPNLKKFATEQQTVSVDVIRKSYAATEEGFLNLVRKQWLIKPQLASVGSCCLVGIINEGVLYVANTGDSRAVLGRLERGVIKAVQLSAEHNASIESVREELRQFHPDDPRIVVLKHNVWRVKGLIQVSRTLGDAYLKSTEFNQEPLLARFRLSEPFHKPILSPEPSIEVHKLCTEDQFVIFASDGLWEHLTNQEAVDIVNCSPRNGIARRLIKAALREAAKKREMRYSDLKKIDRGVRRHFHDDITVVVLFLDSALVGKRFYGGPLLSLRGGDASPSASQVSVVLCAREGFGEFEAGGSPVQ |
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| Function | Probable protein phosphatase 2C 38 [UniProtKB/Swiss-Prot:Q9LHJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0048550 | OsKeNa_01g0048550.02 | Chr01 | 43308588 | 43311790 | - | NAM | ||
| CDS seq | atggttgggcagacggtcatgcggattgtgcgcccctgcttcaagcccgaccaccagctcgccgtcggcggcaccagggatggattgctctggtacaaggacaccgggaggcacgcttgcggcgacttctccatggccctcgtgcaggcaaacaaccttctcgaggatgccagccaggtcgaagctgcccctcttcttctctcccactcctcctccaccacttttgtcggcatctacgatggccatggtggcccggagactgctcatttcatcgcacaacatttcttccccaatctaaagaaatttgctacggaacagcaaactgtttcagttgatgtcattcgcaaatcctatgctgccacggaggaagggtttctcaatcttgtaaggaagcaatggctcatcaaaccgcagcttgcctccgttggttcctgctgtttggttggcatcatcaatgaaggagttctttatgtagcaaatactggtgattcccgtgctgttctagggagacttgaaaggggtgttattaaggcggttcagctgtcagccgagcataacgcaagcattgagtctgtaagggaggaattaagacagtttcacccagacgatccacgaatcgtggtcctaaagcacaacgtttggcgtgtcaaaggccttattcaggtttccagaacgttaggcgatgcttacctaaaaagtactgaatttaaccaagagcctcttttggcgagattccggctttcagaacccttccacaaaccaattctttctccagaaccatccatagaagtacataaactgtgtacagaagaccaatttgtgatatttgcctcagatgggctatgggagcacctgaccaatcaggaggctgtggatatagttaactgttcgccaagaaatggtattgcaagaagactaataaaagcggctctgcgagaggcagcaaaaaaaagagaaatgaggtactcagacttgaaaaagattgatcgcggggtcaggagacactttcacgatgatattactgttgtagtactattcctggactctgctctagttggcaagagattctatggtggcccattactttcactgaggggtggtgatgcatctccctccgcctctcaagtctccgttgtactatgtgctagagagggctttggagagtttgaagctggaggtagccctgtgcaatga
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| Protein seq | MVGQTVMRIVRPCFKPDHQLAVGGTRDGLLWYKDTGRHACGDFSMALVQANNLLEDASQVEAAPLLLSHSSSTTFVGIYDGHGGPETAHFIAQHFFPNLKKFATEQQTVSVDVIRKSYAATEEGFLNLVRKQWLIKPQLASVGSCCLVGIINEGVLYVANTGDSRAVLGRLERGVIKAVQLSAEHNASIESVREELRQFHPDDPRIVVLKHNVWRVKGLIQVSRTLGDAYLKSTEFNQEPLLARFRLSEPFHKPILSPEPSIEVHKLCTEDQFVIFASDGLWEHLTNQEAVDIVNCSPRNGIARRLIKAALREAAKKREMRYSDLKKIDRGVRRHFHDDITVVVLFLDSALVGKRFYGGPLLSLRGGDASPSASQVSVVLCAREGFGEFEAGGSPVQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0048550 | OsKeNa_01g0048550.01 | Chr01 | 43308588 | 43311900 | - | NAM | ||
| CDS seq | atggttgggcagacggtcatgcggattgtgcgcccctgcttcaagcccgaccaccagctcgccgtcggcggcaccagggatggattgctctggtacaaggacaccgggaggcacgcttgcggcgacttctccatggccctcgtgcaggcaaacaaccttctcgaggatgccagccaggtcgaagctgcccctcttcttctctcccactcctcctccaccacttttgtcggcatctacgatggccatggtggcccggagactgctcatttcatcgcacaacatttcttccccaatctaaagaaatttgctacggaacagcaaactgtttcagttgatgtcattcgcaaatcctatgctgccacggaggaagggtttctcaatcttgtaaggaagcaatggctcatcaaaccgcagcttgcctccgttggttcctgctgtttggttggcatcatcaatgaaggagttctttatgtagcaaatactggtgattcccgtgctgttctagggagacttgaaaggggtgttattaaggcggttcagctgtcagccgagcataacgcaagcattgagtctgtaagggaggaattaagacagtttcacccagacgatccacgaatcgtggtcctaaagcacaacgtttggcgtgtcaaaggccttattcaggtttccagaacgttaggcgatgcttacctaaaaagtactgaatttaaccaagagcctcttttggcgagattccggctttcagaacccttccacaaaccaattctttctccagaaccatccatagaagtacataaactgtgtacagaagaccaatttgtgatatttgcctcagatgggctatgggagcacctgaccaatcaggaggctgtggatatagttaactgttcgccaagaaatggtattgcaagaagactaataaaagcggctctgcgagaggcagcaaaaaaaagagaaatgaggtactcagacttgaaaaagattgatcgcggggtcaggagacactttcacgatgatattactgttgtagtactattcctggactctgctctagttggcaagagattctatggtggcccattactttcactgaggggtggtgatggtgcttcaacgcttacacagaaatga
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| Protein seq | MVGQTVMRIVRPCFKPDHQLAVGGTRDGLLWYKDTGRHACGDFSMALVQANNLLEDASQVEAAPLLLSHSSSTTFVGIYDGHGGPETAHFIAQHFFPNLKKFATEQQTVSVDVIRKSYAATEEGFLNLVRKQWLIKPQLASVGSCCLVGIINEGVLYVANTGDSRAVLGRLERGVIKAVQLSAEHNASIESVREELRQFHPDDPRIVVLKHNVWRVKGLIQVSRTLGDAYLKSTEFNQEPLLARFRLSEPFHKPILSPEPSIEVHKLCTEDQFVIFASDGLWEHLTNQEAVDIVNCSPRNGIARRLIKAALREAAKKREMRYSDLKKIDRGVRRHFHDDITVVVLFLDSALVGKRFYGGPLLSLRGGDGASTLTQK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 43308946 | 43309260 | - | OsKeNa_01g0048550.01 | OsKeNa_01g0048550.02,OsKeNa_01g0048550.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.717989 | 7.155033 | 4.348016 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0976700 | RBH | 3.412389 | 2.428342 | 4.577922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74530 | RBH | 2.222069 | 1.623329 | 1.130055 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0976700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0049030 | RBH | 0.000000 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048920 | RBH | 1.879716 | 10.499960 | 9.048460 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048470 | RBH | 0.573960 | 0.329496 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047970 | RBH | 11.648109 | 11.186865 | 24.289074 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0709300 | RBH | 10.029748 | 18.86065 | 10.497119 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047440 | RBH | 0.581172 | 0.809644 | 2.736377 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0711000 | RBH | 7.1533985 | 12.588701 | 11.1671465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0048140 | RBH | 0.591251 | 0.637519 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047930 | RBH | 0.769697 | 10.797500 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0048210 | RBH | 9.086092 | 39.885071 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0048170 | RBH | 1.264525 | 0.790994 | 3.571803 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0047950 | RBH | 0.808474 | 14.488498 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G048260 | RBH | 1.096048 | 2.061122 | 4.976686 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0048020 | RBH | 2.342849 | 31.560659 | 8.813016 |
