Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0046450 | OGI:01121600 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:41862785-41865182 | ||||||||
| Gene Symbol | GNS3, Gns3, OsGns3, OsGLN1 | ||||||||||
| DNA seq | atcgacgatcaggagcgagcattgaagcatacgtatatccatctccagaaactcgatcaagcatactagctgagacagatcgagtcacctagctatttgagcaaatgggaggtatatattttagattattcattattttccttccttttttcaagcaattaattctctattttcgttgatttgatcgatcgatcgatcgtaatacggttgcgtggtgccgtggtgatgatgcagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgccgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccatcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccagcaacccctccgccgccggcgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccctccgtcgcacggcgtgttccgccccgacgtgcagcagttcatggctcccatcgcgcggttcctcgccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcctacagggagaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacagcgacagcggcctcacctacaccaacctcttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgcccaacgtccgcatcgccgtgtcggagaccgggtggccgtcggcgggagggttcgcggcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacacgtatgccattatcacatttcgtatgatatatcgtcgtatatatatccgcgtatacacgtacgttggtacatgtagctaacgggtgcgtgcattcgtgtgttggtaatttttgtagcttatcctcgtccagccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgatctcccgtcacgtagcgaggtggtgcagatgtacgtgtccctgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggcatcgacctcatcctcgacgctggcggcttcgacacggtgtcctatctcgccgccagctcctccaacgcggcgtcatgggtccacgacaatatcagcccctactacccggccgtcaacatcaagtacatcgccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcatagctcagtacctggcgagcactggcgcgccgctgctggccaacgtctacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccacgttccagccgggcacgacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccgacgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggatcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagacaggggctgccaccgagaggcattttggcctcttctaccctaacaagtcgccggtctatcagattgccttttcgaattagcagctgccaatataaatgagttacagccttacaggtgatcgatcgagtaatgcttcattaaatgttgggcgtattttaatgttctcagtatgttactttatgTtttataataaaagctacatgaatataaacttttcaaggtttcttatcgattgac
More
|
||||||||||
| CDS seq | atgggagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgccgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccatcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccagcaacccctccgccgccggcgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccctccgtcgcacggcgtgttccgccccgacgtgcagcagttcatggctcccatcgcgcggttcctcgccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcctacagggagaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacagcgacagcggcctcacctacaccaacctcttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgcccaacgtccgcatcgccgtgtcggagaccgggtggccgtcggcgggagggttcgcggcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacaccttatcctcgtccagccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgatctcccgtcacgtagcgaggtggtgcagatgtacgtgtccctgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggcatcgacctcatcctcgacgctggcggcttcgacacggtgtcctatctcgccgccagctcctccaacgcggcgtcatgggtccacgacaatatcagcccctactacccggccgtcaacatcaagtacatcgccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcatagctcagtacctggcgagcactggcgcgccgctgctggccaacgtctacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccacgttccagccgggcacgacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccgacgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggatcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagacaggggctgccaccgagaggcattttggcctcttctaccctaacaagtcgccggtctatcagattgccttttcgaattag
More
|
||||||||||
| Protein seq | MGAVNGVCYGVLGDNLPPRSEVVQLLKSQGIGAMRIYYPDKEALDALRGSGIAIIVDVGDSGAVANLASNPSAAGDWVRDNVEAYWPSVIIRYITVGNELPAGDMGLILPAMQNVHKALVSAGLSSSIKVSTAIKMDVVANTFPPSHGVFRPDVQQFMAPIARFLANTVSPLLVNVYPYVSYRENPRDISLNYATFQPGTTVRDSDSGLTYTNLFNAMVDAVYAALEKAGTPNVRIAVSETGWPSAGGFAATAENAMNHNQGVIDNVKNGTPKRPGPLETYVFAMFNENQQTGDETRRHFGLFNPDKTPAYPITPYPRPAVQSIGVCYGMVGNDLPSRSEVVQMYVSLGINRMRIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASSSNAASWVHDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANSYPPSAGVFAYPYMNGIAQYLASTGAPLLANVYPYFAYAGNPREISLNYATFQPGTTVRDDGNGLTYTNLFDAMVDCIYAALEKADAGNVRVVVSESGWPSAEGIGASMDNARAYNQGLIDHVGRGTPKRPGQMEAYIFAMFNENQKTGAATERHFGLFYPNKSPVYQIAFSN |
||||||||||
| Function | Glucan endo-1,3-beta-glucosidase GII [UniProtKB/Swiss-Prot:P15737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0046450 | OsKeNa_01g0046450.01 | Chr01 | 41862785 | 41865182 | + | NAM | ||
| CDS seq | atgggagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgccgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccatcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccagcaacccctccgccgccggcgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccctccgtcgcacggcgtgttccgccccgacgtgcagcagttcatggctcccatcgcgcggttcctcgccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcctacagggagaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacagcgacagcggcctcacctacaccaacctcttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgcccaacgtccgcatcgccgtgtcggagaccgggtggccgtcggcgggagggttcgcggcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacaccttatcctcgtccagccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgatctcccgtcacgtagcgaggtggtgcagatgtacgtgtccctgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggcatcgacctcatcctcgacgctggcggcttcgacacggtgtcctatctcgccgccagctcctccaacgcggcgtcatgggtccacgacaatatcagcccctactacccggccgtcaacatcaagtacatcgccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcatagctcagtacctggcgagcactggcgcgccgctgctggccaacgtctacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccacgttccagccgggcacgacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccgacgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggatcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagacaggggctgccaccgagaggcattttggcctcttctaccctaacaagtcgccggtctatcagattgccttttcgaattag
More
|
|||||||
| Protein seq | MGAVNGVCYGVLGDNLPPRSEVVQLLKSQGIGAMRIYYPDKEALDALRGSGIAIIVDVGDSGAVANLASNPSAAGDWVRDNVEAYWPSVIIRYITVGNELPAGDMGLILPAMQNVHKALVSAGLSSSIKVSTAIKMDVVANTFPPSHGVFRPDVQQFMAPIARFLANTVSPLLVNVYPYVSYRENPRDISLNYATFQPGTTVRDSDSGLTYTNLFNAMVDAVYAALEKAGTPNVRIAVSETGWPSAGGFAATAENAMNHNQGVIDNVKNGTPKRPGPLETYVFAMFNENQQTGDETRRHFGLFNPDKTPAYPITPYPRPAVQSIGVCYGMVGNDLPSRSEVVQMYVSLGINRMRIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASSSNAASWVHDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANSYPPSAGVFAYPYMNGIAQYLASTGAPLLANVYPYFAYAGNPREISLNYATFQPGTTVRDDGNGLTYTNLFDAMVDCIYAALEKADAGNVRVVVSESGWPSAEGIGASMDNARAYNQGLIDHVGRGTPKRPGQMEAYIFAMFNENQKTGAATERHFGLFYPNKSPVYQIAFSN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 10.301193 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0946500 | RBH | 0.444494 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71830 | RBH | 0.0 | 0.0 | 0.127369 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046650 | RBH | 0.0 | 31.250576 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046160 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046840 | SBH | 0.0 | 65.872742 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046310 | RBH | 0.0 | 1.685419 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045810 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681300 | RBH | 3.442883 | 0.0150465 | 0.057027 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045350 | RBH | 0.0 | 5.806153 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0683500 | RBH | 7.4921425 | 0.025908 | 0.002766 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045910 | RBH | 0.0 | 0.165468 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045760 | RBH | 0.0 | 55.179989 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045890 | RBH | 0.0 | 26.309940 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046060 | SBH | 0.0 | 6.411289 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045620 | RBH | 0.0 | 12.882791 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045830 | RBH | 0.0 | 0.000000 | 58.835526 |
