Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0042300 | OGI:01113920 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:38612345-38623825 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaacctttactccaatgctgtataaataactgtgaaaacttatgtactggagtatatccattgctgtttgtttgatggggctctgagcgtctgacattggaatatgctaaacatcactaaaccgactgtccatttctgtttgccttgtttagcaaattttgctagacattgcaatctgctaaaacatcactaaagAaaaaaaaaagatctccactgaaccgcctatgaccaaaactaaacatttacatcaactcaagcttcagcgatgcctgcttaaggttcagctacactgttgaataacgcaaggaacgaaaaaaaaaaagcctatttaggtcaagaagaaaatttcaggcccatggcctctgttagcaggacggaatcattctgtgtctggcctaatctccacaccctaaagtccggagggaagaaacgattccggtgccagttccgcatatgctccattgtgaatggcccttgcactttcccctgaggatccgcgtaattccatatgtattcatgctcacctggcgcattcatggattgcagtgcgtgaagtgcagcgatagccggaacacggcctttaggcgcggtagtcccgttcttgcctctcttagcacaaggaagagtgggagcactagtcccattcatggctaccggagcaccatgagtgggagccatgaccacgtccatggctgcccgaggagcagcacgttctggttcatgttgctctgggtgaggatcctcgtcttcatcgctgtctgagtcgataacgataacactcttgcgatcattgagacgccttgaggtatttccgccattgcacatatcgctgccttgagccgtgccaccatctaaacaagattagtcttggttagagaagaggaaatcaacagtaaagcaatcacaggattgagagtagcacctctgagctctctcaaaatgcaaggaatcaaggtataatcgatgggaaaaattaaaagataaatgaacaatgttagctcaatatgcagcaactagaaacttccagaaattcattaggcccatcataactagcaaaaggagtgagtagaaaaccttgagcattgtgcattttgttttgtagtccagacccaggaatgccaccattacaaaggtctttaccaggtgctacatgaaataacataaaaaaggaaaccataaggatgcaaatccaacaatagcagctggccaatttcatgcatttccatatttcagggaaaggattgaatgtcaagagcacacactggacaacagagatcattgttgatcatcgtaaatagaaaaactatctgtatgtggatatatgcatattactcccatgaaaacatgcatatcttcatgttataacagggtattactgctgttgagatatactgctgcatagaggttttctgcttgttcattgatttacgctcaatagagatctttaggggattcatctggtgcttaaccctgattaagtgctatcatgctgaattctaatttgggtgtttaattagcttgaaaaaaaatcctaaaacaaacagtggaaatagtccttagtatgataaaccaccatggatatttgaactccaaaactcaacagtaatagtttccccttttattccctttatgtatatgttcagtttttagattgggttgattgtatttgttaagattggaagttatatgatattttcatatctgtttcaacacaaaagcagtgtgctactacatcaatagatgaaagtggggttcaaagaatcaattatagagtacattccaaagcaacttcacaagtagtatctacttgctcagatgctctgctcctagaggcaacccaagtagcagttagccagctatgatacccaaaatattatatgattgtttaatgaaaaaacaaaccttctggagtttcctcttcaacaacctccaagatactagctacttgtcctgatgcatctgaagccaaaaaaaggaaaggagatataaccttccattggttacatctatatcaagattaatctattcgaagaaaaaatattagagaaaaggcagaggcacagaataaccttctgaagtttcctcttcaacaagctccaagatatcagctacttgtcctgatgcatctgaagcccAaaaagaaaaggagataaaaccttccattggttgcatctatatcaagattattctgtttgaagaaaaaatatttgaggagaaggcagaggcacagaataaccttctggaggttcctcttcaacaacgtccaagatatcagctacttgtcctgatgcatctgaagccgaaaaaggaaaggagataaaaccttccattggttacatccatatcaagattaatctgttcgaagaaaaaatatttgagaaaaggcagaggcgcagaataaccttctggagtttcctcttcaacaacctccaagtaatcagttacttgccctgatgcatcttgaacaaagaaattaaagaaggtaaaacatcattagttacatctatctcaagaatcaagattaatctgttccaaagaaaagatatttgaggagaaaaggggcaaaacatgatcatttggaaatattagataaggtagagacatgatcaaaacaaagcaccaatcacactgacatgaaacaaaaccttccggtgatttctctatagcaactttcaaaggttcagctacttgcatttttgcacttagaaataagaaggataggcagcgacttagaatttaaaaagagagcaggctgggctgaggctgttccatctactgctaacaactgaagttcaaaataatatcagatacaatgaaacatgaggagagaaaaaagctcaaacaaaagcttagataaaacttgtaaaaaacaaataatgaagtaaacatagtgaatataggtagaaatattcagaaaagtgtcaactaccgcaaaaaaatcatgactgatttagtaatacaaaccttgtgatttagccatatcaacattgaaaacatcagctactcgtgctgttgcacctggagacaagggcgcagatctcagcacataaaaaataatgtgacctccattggttcactctaatactagcaactaagttcaaaataacaaccaatgtatgagggaaagacaagagtaacaaatagcaaatccccccccccccccaaaaccttcccccgaagcacgaagaggggggaaaggactataaccatactgacaaatcattaggtgcaccttgaaccaaacatttgcagaaatgcagaacaaacacaaagtacagaagtacagttatcttctaagcattagctgcacagtacatatctgattgctagaaaacaaacctcctggtaaaccctccataagtactttcacagaatcagctatatgccctgttgcacctggagatgagagaagtaaaactcttattaaggtctcagtgttaaaatagagcaagtgctttagttctatctaatactaacgaccaagttcaaaataacaactagcctacaagggaaagataagagatgtgaatagcaatttattaaatgtcaagcacaaagtacagttattcttctaagcattaactgcacagaccatatctgattgttatgaaaacaaacctcgtgaatcctccattagaactttcacagaattaggtacatgccctgttgcacctggagatgataaaagataactcttaataaggtctcagtgttaaaagagagcaagcaaacctgctatcagttacaaattccacataataacaaaaaaaaaactacagtacataatagcaactattttagggaaaaaggtacatgtacataatagaaataccacaaatggaatggaactcttaatggcaaaagcaagcccgccattagttccactttccacataatactaaaaactacattacataatagcaaccaaattaggggggaaggtacaagtgcctaatagcaaatacacgaaatggaaaggaacactcgatgggcaaagctgacaagaaagagttaccactcacattcactcttgactagttagaaactactacaataatatgaactagaaaaatgctgtaaaccatcgatcttgttattattgtggttcagataattcaagaacttattaggatctacaatatatatgtaaacaaagcgaaagcattattttctagaaaaaaaaaagattatagcatcaattttgtacatgccatatatctacttacaactaggatttaatacttgttttgacacacaaaatcagtgtttcgtatgatccatgtccatacaggtagattgcatgccacaaaaaaatcagcagcatattatgacaaactggcctaaacccacttatcaagcttatcaagtcaagattacattaaaatacaagttggcagggcatcatcaatgacccttcggttgctgcagtaaacttgcagcaaaattactgtgctaagattacagtatgatctgctattttatagttatactagaaaaaatgtccgtgccttgcaacgggtgaaaactattttaatcttattattgttatacggtttagttaaggtgaaattcactgtgaaaattcacttggatatatatttttctagaaaatcatgagctgcaattaggagtccaatcatctcaagttagcatgcgagttcatttaaaaagatttcttatacgattccttctatatttccaaaagcgaacgcacttaaaacccgactcaactacagatctgtatttccaaaagcgaacgaacttaaaaaccgactcatacacggatgacgtaccaaagtaccagcaaaaacatcttcaatttttataatagtagagatttctgtattgttctgtgataattgagaatctaaagaacctgatggcacttgagttttaagctggccacccttttgtgacataacgaaaacatactactgatgtgtcttatatgctcctccaccagtctcaagtatggatggttacagcagatttgcagggaacagctcttagtgcatgcgaaactaatgaactcgagtttgttcttgcactgctgagtgctgagtattggaggcaattagaactataaactatatgttacatccatagaataatgttaaattagtagcttcaaaaggtaaacagagcagatgtgaattgtaatacaaaaccatcttgtgtgtgcaagttagctacagtactactctatatactactctacctaggtaagcagagcagcagccaatgtcaagcaacccccatgatgtattgcaaacaaatccagtatttgttcaaaaaagtaacaaatccagcattaattttaaaaatgtaacagatccataatttacttttaaaactgtaaaatcccaaatatttgtaaagaattaagtgaggataacttttaaaacataatatttttattgaattaatttgacaagatgtatacattctgtatctgcaactggaaaataactagtgaaagaattcaattccaagttggtatttcaaaatgatcacacggaacaaatgacttcatgcatgtaaggtctcaggatttttctgcttaaatgcctctgcagggatgattgtgaagctaaataagaaaagagtttaataaccatgaccaatctatctgccaactcaacgcataaaatagagagtatagaatacaaacaaacacaatggtaaagaaaggagcaaaattaagtcaatgagatattcaaacgagtaaatttcacaatcctatgcttttaatgcaaaaatattcaaagaaccacacttttaacaatagtttcaaaacacttacattgggttgcatactgttttacaaaagaacgtttgcattatccttaaaatgtagttttgcaacactgtatgcaactatagttgtacttttgtgaaactacttcctcgtggtatttcattgatagttttccataagaaaatgaaatttgctctaaattgaattactgttttcaacctctagatggacatagatcagaagagcaaaatagcacctacatgatgtatcactttgcacaattattagcgtaaaacagatgggaaggaaaatatgtttcatagaagagccaaaatttgcgttcacgaaaaaaaaatagaagagccaaaatttcaaggttttgaacctttgttttcttcaagatggttgcttgcagcaactccaaattcatcccttttactctcttctgtatctggaatagcttctgggacctctgcaagacgacgttgtctttcgtcttgtgtgcttagaagtcTttttttattaaatagttcatgcaatgttaaaatagagttggtcaaggaataactataataaaattcttccatgttacaaggaaaaaatgctggcagcagtccaataagaaaatcagacaaacccttaacaactactccctccgtcccaatatatagcaacctaggatgagacccatcataggttgctatatattgggacggagggagtacaagtttattgccacaaataaaagacaatttggaaggatattcttggcgccaacccttctcatgtgctctttcgatctccttttccagtctcataagttctctatcaatccactgaaaaaagggaaaccttgtcaatcattgtattgtaggaaccacaaaagtatttagtttgctataacaatttgctttcaggtttcaaactgtgtctaaaattaagaaatttaatttggaatgaagatagcataaggagtcaaacatcaagattatttccagagaagggaacagacagtacctcgacctactgcagaacaagattaggatatagacaatacttaagtatcaaaccaaaatataagtgcaaaacatatttttatcaaaagggcaataatttaaaataggtcacaagtttgaaaacaagctaatgtcaattatatagggtatttattttgtagttaagaactaaagataggaagttaaggatctcttgctgagtcattcactagggcagtcaataagatgtaaagccacttccgctcttttaaaattgcctcagacaaccaatttgttattgagctttccatttctaaactcaaaaataaagcataataaaattccacggaaatcaattcagagttcacttacatgattcacgatgtccacatgtatacttgcagctttctcttctaaatcagcctatcaaaaatccagacccagagcagtaaaagaggagtttagaaatgcacaactgcacggtgctcaagaaaaaacgagaaactgaataaacTGTtgttgttttttttagctcacagaaactaataagtgaaaactgaagtaaataagctgactcacatagaagataaatgttttagccatgtaagtgtgaatgcacaagtccaggcaacacaataagacccaaattaagtggttagtggttacatgtataaaagtagacatgcagttcgtattacacatgcacattcagcgactcagacagaccaacatgcataagttaagtagcagcaggttgagagggctatattactatataaaaagagatccacccaacatggcatgcacatcagcatgaacatcaacaaggatgtctccactgttaaaaacaatcccagaaaacaatatattatttcatcactaaagttatatatgtaaatatacatcacagaatatatcattgctgctgtcggggactgcaactaggaaaaggaagcttttcataacatgaacttacaacagtaggtcttttgaagagtccttttttagccaacagaaggagatcattacactcgtcctgttatcaagagcgcaaaaggaagtgtttgaccacatcaactattcagggaaatattttgagtggacagaacaatgtagaataaagaaagtaagacacttcctctgtcccgatattagtctggcacactaataatattcaaaagagtagactttgcttatccttgctagatgcgcatgctactacgacatcgaatcgggcagtttcttttttcggtggttcttgggaggcaccaagaggtactagtacctcccaaggaccataagaataactcacaaaataggaaatcatggtttgattataaaatactccatattacttcaaagttaagatttcttggtatgtgtgttacattatagtatcaaatgggagtaataacggcctacttgatcataatggtagtactcattccattttatatcagtacactaggaaaagaatcatacctcctctatgtcctcttcagacaacatggagatcttgatgtcatcccacagattggaaacacataaaagaatatctgtacgtttgtcctttatcttgtattcttgtggagatttcctaatgcctgttatggatgttttcaacatggtgagaaagtcatatccttcctggaggatagatagtacagcatataggccaatgcatgaaatatgaatgtagcactaaaatggttttcatctaaaagaaaacaaaataatttttggcttgctggttaatgaagaaaaaagatgatttggtcttccactgcaatactacagatatgctatacatgcctgacaaaaattacagaaaccatcaaagttcaaaacttgagaagactgcctgtagttgattacctgttactaggccaagctggtagtgttttttaggcatctgataactataatgattgtcatcattcttgactctaaccaaacttccaacaactttctgttcaaatgtgtcttggcccataagattcataattagagttcttctcaaataaattaactttaagttattgtgattaagagctgcaaagcatttcttgtttctctttggatccctctcagaagtctctgccgcctttaaagtattacaaggcctttttctcataattcggccttcatcatcctcagaatcatcgagaaaatcatcctctgaagcagcatttgccgcaagatgtatttccagcaagttaagaatcatatttgacttcacttttcttttcctgaacaaagaatgaagcttatcatcacaaatgacagattttcttttcctgtccttgaatagattcttctgctggatgtactccttaacaactccagtaagtataaattcatcaagaggtttagttgtatccttgccaatacatgacaggaattcaattagctcttttgaaccccaaccgacatatgttttcttgtttgacttctttctcttcagtgacatttttgcttcacttggttggacctttacatcaaccgggaatggttgttcagcgccatcattaacactcaatgaattcttatctgccctgtaatcttcatctgggggtttctctgaatcccttccttgtttacagcttaagcttgttctaagacaaatattggcttgctgcaaatcaatcaatgccaagccttcattgtctttaatagtttcccagtagtctttaaacagaacaagatagttctccgtatatctgaattcaactgtttcctagggatgcacatgaacagtaatcagaaaaagaccagatatatggagaggtcaactgacatttttgtggaaactacccagacaaattatgccagaggaacaataaacagataaatacaaggttaatggacctatggtaggcactactgtactaggccattgaattttttttcaaggattgactaatggcaggcatggagtggcaggggattggtggaagcttaaccctccatccaaaggtctaaggcatatttcttttgtcatcaagaccaaggagaaattaactcatcctcatgtaacaaagacgaagaaactatatgtgcatgcaaccaataagtattaaggtggttgcttgggttccactcaacaatttaatttagcactgtaaaacaataaaacaaccccttcacttaagcctcagatgcatggagactacaaatatgtctatctcatttggaaaaaccaggaaatgaaaaaggctcaagacttttggatggagggagtactacctccagaaaaatggaaaataaatgctataattcaaaaactgtaaaaggatccacatgcacttaccccatcagaattagcttcagagttcttctcaacaaacaatgccaactttaaacagttattgcataatcctttggtctggctctgcttcctaaattgtgcaaattcaacttttccaaggcattcaccgcatacagaggaacttggacaacacaaacaatgatattctgaattccttttgcagctaacacatttgtgcaattctgcaaatagtaaaagttaggctcaagaatgaatagcattattgtaccacatggtagaagttgaaagaggcactccaagaacagaaaaatgaaatccaaaaaatgcatagtactgctagctcacaaaagtactttgcagcttatttctgacagattatatgctaaacaccttccttttagttatgtctatgctacataaaaactactgagcaattaatcctcccaagttttttgtccaagatactgaagcccattcactactaataaatgaaaggttaagcatccagcagccgaTttttttttctaggaaaaagaaaggggcattggcaattccacaaaggcaggacatgatttaggatacttggtcaaaccaaatgaatgaggtaaccaaacatgggcaggcagcataatgggtattgcaatgtcgtgctaattcagatagcagctaagtatggttgaaatactgggggaaaaaaacaaaaggcgctcaccacaaatgaactgttcggcagaatcaaggaagctttcctccttccccacacagtgtggatgataacccttgaggcagttcctgaaaagcataacaaggcacaattagctagctacactgtcaccaatcgattggaaatgatcccgacgatactgttccaacttccaagggcaccacagaactgaattctgcatgcagcagccactgcacccaccatctaccaaaaacccgcattgcacacattccccccaacagaacaaacctcaattccaaccattttttttccaacagaggagatagcgacagcacaaaaccacgaaccgaaccaaaaaaaaatagtgaggaggggggaggaggcgaagctcacttgaagtcgcaaacgcggatgtcgccgccgtccttgcagacgaagcagagctcctcggccatatcctccaccttctgcttgctcctcctccccatcgcccaaaaccccccgcgcgagggggataatcagaaaaaaaaaataaaaaaaaaaccctcgtcgtcttctccccccccccccccccacaatccccgccgacgaacctcgccgccgccgtcgtttgcggccgcggcggcggatgggggagagagcgagggtttcgggggagtgaatgcggggaggaggcgaggatcgaggcgcggggcgcggggcggggcgtctcgaggaagatgagaaaagggggagagagagagagagagaatct
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| CDS seq | atggggaggaggagcaagcagaaggtggaggatatggccgaggagctctgcttcgtctgcaaggacggcggcgacatccgcgtttgcgacttcaagaactgcctcaagggttatcatccacactgtgtggggaaggaggaaagcttccttgattctgccgaacagttcatttgtgaattgcacaaatgtgttagctgcaaaaggaattcagaatatcattgtttgtgttgtccaagttcctctgtatgcggtgaatgccttggaaaagttgaatttgcacaatttaggaagcagagccagaccaaaggattatgcaataactgtttaaagttggcattgtttgttgagaagaactctgaagctaattctgatggggaaacagttgaattcagatatacggagaactatcttgttctgtttaaagactactgggaaactattaaagacaatgaaggcttggcattgattgatttgcagcaagccaatatttgtcttagaacaagcttaagctgtaaacaaggaagggattcagagaaacccccagatgaagattacagggcagataagaattcattgagtgttaatgatggcgctgaacaaccattcccggttgatgtaaaggtccaaccaagtgaagcaaaaatgtcactgaagagaaagaagtcaaacaagaaaacatatgtcggttggggttcaaaagagctaattgaattcctgtcatgtattggcaaggatacaactaaacctcttgatgaatttatacttactggagttgttaaggagtacatccagcagaagaatctattcaaggacaggaaaagaaaatctgtcatttgtgatgataagcttcattctttgttcaggaaaagaaaagtgaagtcaaatatgattcttaacttgctggaaatacatcttgcggcaaatgctgcttcagaggatgattttctcgatgattctgaggatgatgaaggccgaattatgagaaaaaggccttgtaatactttaaaggcggcagagacttctgagagggatccaaagagaaacaagaaatgctttgcagctcttaatcacaataacttaaagttaatttatttgagaagaactctaattatgaatcttatgggccaagacacatttgaacagaaagttgttggaagtttggttagagtcaagaatgatgacaatcattatagttatcagatgcctaaaaaacactaccagcttggcctagtaacaggcattaggaaatctccacaagaatacaagataaaggacaaacgtacagatattcttttatgtgtttccaatctgtgggatgacatcaagatctccatgttgtctgaagaggacatagaggaggacgagtgtaatgatctccttctgttggctaaaaaaggactcttcaaaagacctactgttgctgatttagaagagaaagctgcaagtatacatgtggacatcgtgaatcattatgcaacccaatgtgcaacagggcatgtacctaattctgtgaaagttctaatggaggattcacgaggtgcaacagggcatatagctgattctgtgaaagtacttatggagggtttaccaggaggtgcaacagcacgagtagctgatgttttcaatgttgatatggctaaatcacaagatgcatcagggcaagtaactgattacttggaggttgttgaagaggaaactccagaagatgcatcaggacaagtagctgatatcttggacgttgttgaagaggaacctccagaagatgcatcaggacaagtagctgatatcttggagcttgttgaagaggaaacttcagaagatgcatcaggacaagtagctagtatcttggaggttgttgaagaggaaactccagaagcacctggtaaagacctttgtaatggtggcattcctgggtctggactacaaaacaaaatgcacaatgctcaagatggtggcacggctcaaggcagcgatatgtgcaatggcggaaatacctcaaggcgtctcaatgatcgcaagagtgttatcgttatcgactcagacagcgatgaagacgaggatcctcacccagagcaacatgaaccagaacgtgctgctcctcgggcagccatggacgtggtcatggctcccactcatggtgctccggtagccatgaatgggactagtgctcccactcttccttgtgctaagagaggcaagaacgggactaccgcgcctaaaggccgtgttccggctatcgctgcacttcacgcactgcaatccatgaatgcgccaggtgagcatgaatacatatggaattacgcggatcctcaggggaaagtgcaagggccattcacaatggagcatatgcggaactggcaccggaatcgtttcttccctccggactttagggtgtggagattaggccagacacagaatgattccgtcctgctaacagaggccatgggcctgaaattttcttcttga
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| Protein seq | MGRRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLKGYHPHCVGKEESFLDSAEQFICELHKCVSCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSEANSDGETVEFRYTENYLVLFKDYWETIKDNEGLALIDLQQANICLRTSLSCKQGRDSEKPPDEDYRADKNSLSVNDGAEQPFPVDVKVQPSEAKMSLKRKKSNKKTYVGWGSKELIEFLSCIGKDTTKPLDEFILTGVVKEYIQQKNLFKDRKRKSVICDDKLHSLFRKRKVKSNMILNLLEIHLAANAASEDDFLDDSEDDEGRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNLKLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKHYQLGLVTGIRKSPQEYKIKDKRTDILLCVSNLWDDIKISMLSEEDIEEDECNDLLLLAKKGLFKRPTVADLEEKAASIHVDIVNHYATQCATGHVPNSVKVLMEDSRGATGHIADSVKVLMEGLPGGATARVADVFNVDMAKSQDASGQVTDYLEVVEEETPEDASGQVADILDVVEEEPPEDASGQVADILELVEEETSEDASGQVASILEVVEEETPEAPGKDLCNGGIPGSGLQNKMHNAQDGGTAQGSDMCNGGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPERAAPRAAMDVVMAPTHGAPVAMNGTSAPTLPCAKRGKNGTTAPKGRVPAIAALHALQSMNAPGEHEYIWNYADPQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQNDSVLLTEAMGLKFSS |
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| Function | Zinc finger CCCH domain-containing protein 19 [UniProtKB/Swiss-Prot:Q9SIV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0042300 | OsKeNa_01g0042300.01 | Chr01 | 38612368 | 38623825 | - | NAM | ||
| CDS seq | atggggaggaggagcaagcagaaggtggaggatatggccgaggagctctgcttcgtctgcaaggacggcggcgacatccgcgtttgcgacttcaagaactgcctcaagggttatcatccacactgtgtggggaaggaggaaagcttccttgattctgccgaacagttcatttgtgaattgcacaaatgtgttagctgcaaaaggaattcagaatatcattgtttgtgttgtccaagttcctctgtatgcggtgaatgccttggaaaagttgaatttgcacaatttaggaagcagagccagaccaaaggattatgcaataactgtttaaagttggcattgtttgttgagaagaactctgaagctaattctgatggggaaacagttgaattcagatatacggagaactatcttgttctgtttaaagactactgggaaactattaaagacaatgaaggcttggcattgattgatttgcagcaagccaatatttgtcttagaacaagcttaagctgtaaacaaggaagggattcagagaaacccccagatgaagattacagggcagataagaattcattgagtgttaatgatggcgctgaacaaccattcccggttgatgtaaaggtccaaccaagtgaagcaaaaatgtcactgaagagaaagaagtcaaacaagaaaacatatgtcggttggggttcaaaagagctaattgaattcctgtcatgtattggcaaggatacaactaaacctcttgatgaatttatacttactggagttgttaaggagtacatccagcagaagaatctattcaaggacaggaaaagaaaatctgtcatttgtgatgataagcttcattctttgttcaggaaaagaaaagtgaagtcaaatatgattcttaacttgctggaaatacatcttgcggcaaatgctgcttcagaggatgattttctcgatgattctgaggatgatgaaggccgaattatgagaaaaaggccttgtaatactttaaaggcggcagagacttctgagagggatccaaagagaaacaagaaatgctttgcagctcttaatcacaataacttaaagttaatttatttgagaagaactctaattatgaatcttatgggccaagacacatttgaacagaaagttgttggaagtttggttagagtcaagaatgatgacaatcattatagttatcagatgcctaaaaaacactaccagcttggcctagtaacaggcattaggaaatctccacaagaatacaagataaaggacaaacgtacagatattcttttatgtgtttccaatctgtgggatgacatcaagatctccatgttgtctgaagaggacatagaggaggacgagtgtaatgatctccttctgttggctaaaaaaggactcttcaaaagacctactgttgctgatttagaagagaaagctgcaagtatacatgtggacatcgtgaatcattatgcaacccaatgtgcaacagggcatgtacctaattctgtgaaagttctaatggaggattcacgaggtgcaacagggcatatagctgattctgtgaaagtacttatggagggtttaccaggaggtgcaacagcacgagtagctgatgttttcaatgttgatatggctaaatcacaagatgcatcagggcaagtaactgattacttggaggttgttgaagaggaaactccagaagatgcatcaggacaagtagctgatatcttggacgttgttgaagaggaacctccagaagatgcatcaggacaagtagctgatatcttggagcttgttgaagaggaaacttcagaagatgcatcaggacaagtagctagtatcttggaggttgttgaagaggaaactccagaagcacctggtaaagacctttgtaatggtggcattcctgggtctggactacaaaacaaaatgcacaatgctcaagatggtggcacggctcaaggcagcgatatgtgcaatggcggaaatacctcaaggcgtctcaatgatcgcaagagtgttatcgttatcgactcagacagcgatgaagacgaggatcctcacccagagcaacatgaaccagaacgtgctgctcctcgggcagccatggacgtggtcatggctcccactcatggtgctccggtagccatgaatgggactagtgctcccactcttccttgtgctaagagaggcaagaacgggactaccgcgcctaaaggccgtgttccggctatcgctgcacttcacgcactgcaatccatgaatgcgccaggtgagcatgaatacatatggaattacgcggatcctcaggggaaagtgcaagggccattcacaatggagcatatgcggaactggcaccggaatcgtttcttccctccggactttagggtgtggagattaggccagacacagaatgattccgtcctgctaacagaggccatgggcctgaaattttcttcttga
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| Protein seq | MGRRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLKGYHPHCVGKEESFLDSAEQFICELHKCVSCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSEANSDGETVEFRYTENYLVLFKDYWETIKDNEGLALIDLQQANICLRTSLSCKQGRDSEKPPDEDYRADKNSLSVNDGAEQPFPVDVKVQPSEAKMSLKRKKSNKKTYVGWGSKELIEFLSCIGKDTTKPLDEFILTGVVKEYIQQKNLFKDRKRKSVICDDKLHSLFRKRKVKSNMILNLLEIHLAANAASEDDFLDDSEDDEGRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNLKLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKHYQLGLVTGIRKSPQEYKIKDKRTDILLCVSNLWDDIKISMLSEEDIEEDECNDLLLLAKKGLFKRPTVADLEEKAASIHVDIVNHYATQCATGHVPNSVKVLMEDSRGATGHIADSVKVLMEGLPGGATARVADVFNVDMAKSQDASGQVTDYLEVVEEETPEDASGQVADILDVVEEEPPEDASGQVADILELVEEETSEDASGQVASILEVVEEETPEAPGKDLCNGGIPGSGLQNKMHNAQDGGTAQGSDMCNGGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPERAAPRAAMDVVMAPTHGAPVAMNGTSAPTLPCAKRGKNGTTAPKGRVPAIAALHALQSMNAPGEHEYIWNYADPQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQNDSVLLTEAMGLKFSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0042300 | OsKeNa_01g0042300.02 | Chr01 | 38612345 | 38613159 | - | IsoSeq | ||
| CDS seq | gcggaaatacctcaaggcgtctcaatgatcgcaagagtgttatcgttatcgactcagacagcgatgaagacgaggatcctcacccagagcaacatgaaccagaacgtgctgctcctcgggcagccatggacgtggtcatggctcccactcatggtgctc |
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| Protein seq | AEIPQGVSMIARVLSLSTQTAMKTRILTQSNMNQNVLLLGQPWTWSWLPLMVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.714412 | 4.135189 | 2.933569 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0884500 | RBH | 1.387718 | 1.649188 | 2.833836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66140 | RBH | 0.936583 | 1.107512 | 0.833124 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0884500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042740 | RBH | 0.907099 | 8.756352 | 8.365479 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017550 | RBH | 0.0 | 2.442575 | 1.115527 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042640 | RBH | 0.559539 | 8.188681 | 9.867104 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042110 | RBH | 0.068395 | 0.238005 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041680 | RBH | 2.979333 | 8.515175 | 16.130133 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041320 | RBH | 0.172555 | 0.767325 | 1.386511 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0632800 | RBH | 8.379124 | 12.9117215 | 19.675328 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041690 | RBH | 0.201689 | 0.153521 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041620 | RBH | 1.542479 | 11.665719 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041890 | RBH | 1.161219 | 14.415112 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041830 | RBH | 0.816829 | 1.550964 | 1.676596 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041710 | RBH | 0.245338 | 3.319780 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042100 | RBH | 0.292640 | 2.090400 | 2.586263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041790 | RBH | 1.268136 | 18.011408 | 4.614051 |
