Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0042280 | OGI:01113890 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:38598071-38600728 | ||||||||
| Gene Symbol | NAC6, OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2 | ||||||||||
| DNA seq | ttggaaaataaatgcgtctgttgtattaattccacgctttttcctcgcatggttccatcattttattttccattgctaacaaacagacatcagcatctaccAaaaaaaaaaagatatctacagtactgtattgtattattccagtctctgacttgatgaattttgacttacacttcaaccactgggctaattaattaattaattaagctagcaaccctgaagaagaccttataatgggagtaataattaaccaatgaagaaacagaaacaggaaagctagccccctgtataccgaatcaatcaccatgtactatgtacatgccactatacacacacactgacatgccacccgatgcaattgcaccatctttctgctgctgcctcgtcgtcgttcagtccaggccagggtccccccaaccacggtctcatcgccgcctttctcgagtcctcatctcctctgtctaatccaatccaatccacttaaaacacttcttttaattatctttgagtcaactccggcggctcgcctgagtcaaagttcaccggccatgaagctagctagcctgcacggtgttcagtgacaccattgctgccaatgcggttgttttttttttttttggtcgtctagaatggcttgccccagtacatgaggatgtcctggaggagggggtcgctgccgccgccgccgaggccgccgaggccgccggagccggcggggtcgaggatggaggcggcGgggttgatgggcccgacggtggcgaaggtgcgctcccactcgctgatcttgggctggctctgcacctcgcacgcgaactccggcgacagcacctgctccgagcagctcgagtcggcgtgcagccgcggcatcgagtccgacggccggtcgtagtacgccgccaggtccgggaacgccggccccgccaccaccggcttctgctccggcggggagctcaccgccgcgttcacccccaccatcggcttcctctggacgccgccgccgctgctcaccatccccgccgccgccaccgccgcggccggcggcttctccagcccgcccttcttgttgtaaatccggcacagcacccaatcatccaactgcaccaatacaaaacaaattcataaacaaagtttagaaacaaatttacactcactcAaaaaaaaattaaagtaccaagtgcaaaactaagggcctgtttggtacagctccaactcctaaatttaactccaggagttgagtctggagtggagttgtggagctgcctaaacccaactccacaactctagttcattttgtgagagagctccacccagctccactccccgttttggtggagccgaaactgtttggctgagctccagctccagaaggggtgaagctggagctggagctgtgccaaacaggccctaaacttatcagaaggctccaaattccagcatctaattaatcaagccattgtttaactaatcccGgtcgagtcgctgtccgattactgcttatttgctttcgggatttagctatcgtgggcgtcgcgatcgcaggggcgcgtagggctaaaaaccgattggtccctgaaagggatgaggcgaggtggtgacggcaatgggtttcacgctcgaacgattcgatcgtggctgcgcaagttgcaccacgtaggtgcggccctagagatgagatgagccaacgtctccaattaatttctgcggcccaaagccgtgggccacgctaagcttatcctcccaattcatttcgaaagcgaaatgagctgattaaacaagttgcaaaataaatatatcaaatatctaaatagtagtatccatctagaagtaccaccagctgttcgaatcgagctgcggttttgggcgaataattaggtgactaaattaatcaataatcacgatgaacacagatttagtaatgaatttagtgatggaatcttgggtgtggtttttgcttaccctgaggctgttcttcttgcgggcggagcggtcgacgtcggcgaggcggtactcgtgcatgatccagttggtcttctcgcccttgggcgccttgccggcgtagaagacgagggccttcttgatcgccaccggcttcggcgagcccaccggcttgtcggcgccggtcgccttccagtaccccgacccggcggcgcggttcggccgcgacccgttcgggtacttgcggtctcgcggggagaagaagtaccactccttctctccgtacagcgccatccctacacaacaccaacaaatcaaaccaaatcaatcaatcaattcacgacggcgttgatggtggtgatgattgggaggatggaggaggaggattatcgtacggggaagctgccatggatcgaacttgtagaggtcgatctcggcgatgatggggacggcgatggggaggccggcgcagcggcggcagaggtagtgcatcaccagctcctcgtccgtcgggtggaaccggaaccccggcggcagctgcaggtcctgaccgccgctcatctctctcccccttctccggtgatcgtccgttctccggcgagctcgctactactactgctctctctgtggctttatcctactagtgttgggaagaggagaggagggcttgaaacttgttccgggtgaggagccgggcatttatagagccGggggGCAAGCGAC
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| CDS seq | atgagcggcggtcaggacctgcagctgccgccggggttccggttccacccgacggacgaggagctggtgatgcactacctctgccgccgctgcgccggcctccccatcgccgtccccatcatcgccgagatcgacctctacaagttcgatccatggcagcttccccggatggcgctgtacggagagaaggagtggtacttcttctccccgcgagaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtcggggtactggaaggcgaccggcgccgacaagccggtgggctcgccgaagccggtggcgatcaagaaggccctcgtcttctacgccggcaaggcgcccaagggcgagaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagaagaacagcctcaggttggatgattgggtgctgtgccggatttacaacaagaagggcgggctggagaagccgccggccgcggcggtggcggcggcggggatggtgagcagcggcggcggcgtccagaggaagccgatggtgggggtgaacgcggcggtgagctccccgccggagcagaagccggtggtggcggggccggcgttcccggacctggcggcgtactacgaccggccgtcggactcgatgccgcggctgcacgccgactcgagctgctcggagcaggtgctgtcgccggagttcgcgtgcgaggtgcagagccagcccaagatcagcgagtgggagcgcaccttcgccaccgtcgggcccatcaacccCgccgcctccatcctcgaccccgccggctccggcggcctcggcggcctcggcggcggcggcagcgaccccctcctccaggacatcctcatgtactggggcaagccattctag
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| Protein seq | MSGGQDLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVNAAVSSPPEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFACEVQSQPKISEWERTFATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWGKPF |
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| Function | NAC domain-containing protein 48 [UniProtKB/Swiss-Prot:Q7F2L3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0042280 | OsKeNa_01g0042280.02 | Chr01 | 38598071 | 38600676 | - | NAM | ||
| CDS seq | atggcgctgtacggagagaaggagtggtacttcttctccccgcgagaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtcggggtactggaaggcgaccggcgccgacaagccggtgggctcgccgaagccggtggcgatcaagaaggccctcgtcttctacgccggcaaggcgcccaagggcgagaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagaagaacagcctcaggttggatgattgggtgctgtgccggatttacaacaagaagggcgggctggagaagccgccggccgcggcggtggcggcggcggggatggtgagcagcggcggcggcgtccagaggaagccgatggtgggggtgaacgcggcggtgagctccccgccggagcagaagccggtggtggcggggccggcgttcccggacctggcggcgtactacgaccggccgtcggactcgatgccgcggctgcacgccgactcgagctgctcggagcaggtgctgtcgccggagttcgcgtgcgaggtgcagagccagcccaagatcagcgagtgggagcgcaccttcgccaccgtcgggcccatcaacccCgccgcctccatcctcgaccccgccggctccggcggcctcggcggcctcggcggcggcggcagcgaccccctcctccaggacatcctcatgtactggggcaagccattctag
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| Protein seq | MALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVNAAVSSPPEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFACEVQSQPKISEWERTFATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWGKPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0042280 | OsKeNa_01g0042280.01 | Chr01 | 38598071 | 38600728 | - | NAM | ||
| CDS seq | atgagcggcggtcaggacctgcagctgccgccggggttccggttccacccgacggacgaggagctggtgatgcactacctctgccgccgctgcgccggcctccccatcgccgtccccatcatcgccgagatcgacctctacaagttcgatccatggcagcttccccggatggcgctgtacggagagaaggagtggtacttcttctccccgcgagaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtcggggtactggaaggcgaccggcgccgacaagccggtgggctcgccgaagccggtggcgatcaagaaggccctcgtcttctacgccggcaaggcgcccaagggcgagaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagaagaacagcctcaggttggatgattgggtgctgtgccggatttacaacaagaagggcgggctggagaagccgccggccgcggcggtggcggcggcggggatggtgagcagcggcggcggcgtccagaggaagccgatggtgggggtgaacgcggcggtgagctccccgccggagcagaagccggtggtggcggggccggcgttcccggacctggcggcgtactacgaccggccgtcggactcgatgccgcggctgcacgccgactcgagctgctcggagcaggtgctgtcgccggagttcgcgtgcgaggtgcagagccagcccaagatcagcgagtgggagcgcaccttcgccaccgtcgggcccatcaacccCgccgcctccatcctcgaccccgccggctccggcggcctcggcggcctcggcggcggcggcagcgaccccctcctccaggacatcctcatgtactggggcaagccattctag
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| Protein seq | MSGGQDLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVNAAVSSPPEQKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFACEVQSQPKISEWERTFATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWGKPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.769053 | 7.446582 | 5.282699 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0884300 | RBH | 23.556841 | 25.275320 | 8.410309 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66120 | RBH | 13.554550 | 14.955303 | 2.048693 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0884300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0042720 | RBH | 3.482831 | 19.745096 | 8.638422 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017600 | RBH | 0.0 | 0.000000 | 2.251394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0042620 | RBH | 8.024601 | 14.040013 | 9.344590 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042090 | RBH | 1.411855 | 0.481556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041660 | RBH | 41.244793 | 23.197294 | 30.368135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0632400 | RBH | 31.4561375 | 116.5508155 | 170.319084 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041300 | RBH | 2.333951 | 3.087289 | 4.196971 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0632600 | RBH | 50.9079915 | 219.133423 | 5.6186425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041670 | RBH | 1.632666 | 0.744833 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041600 | RBH | 3.153152 | 43.031879 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0041870 | RBH | 27.218714 | 41.958214 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041810 | RBH | 7.036063 | 2.378531 | 5.463640 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041690 | RBH | 3.682136 | 15.068511 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042080 | RBH | 2.515300 | 1.932765 | 2.390856 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0041770 | RBH | 7.739525 | 81.750137 | 17.212427 |
