Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0032820 | OGI:01094040 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:31281143-31285976 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtaacagtaagtagctcataaggtggcgagcaggaacctcatgctttcacacgattagataggagttcaatcatatcggacaggtgtacacatctgacaacgccttgcactacaattaacagtacactacatgaacgattacacgaactacaaaaacatttactactgtacaagctcttctataattaagaacgatagccattaaatatcttcacgacagcacgatagtcagggtacgctaagtcgcattcagaacttgccagcatcacataagccgctgcactctgagcagagaccaatgctagaagcctagaactcgaaatggcttcaactagatggccagatttctaggatacagtacgtccatagcatactgatgcaaggtagagattcttggaccatttctcctggaacgagacaagcatcactctgtcagagcaaagtactaacggcaaaaactgccaagtacgttactagtatatgaagcagacgaaccttgacatgttgactagggaaagcagatgttctcagcgtctcttgagtttcatctgtaggcttccttcttgggacgcttaaaacgaatgcagcctgatcccaggttgcagcagttgcagttatccggtaaccattgtcccatctctggtgaattccctcactggggtataggaagtccagttcgacaacctgtaaaataaatgcaaatgcatattgtcaaacaaatgtaaatattgatgaacaccattgcagcagaaagaatgctacctgatcagaaaatccagcattacgcgacataacaactgcccatctacttccagctgttgccatggaagtcacataaaaaccgtccctccatttcttgtttatccatttgaaagggaaagtatcacttactttgtaggattgttgtgtatacattgttcctaaaaaagcatgctaagttagtcaaagaataatttatacattataagacaggaatagcactgaaacagcatgctttaactggttaccttttgacatcactaccagggaactcccattatttgctccagcaagtgcagttatatagtagttcctttcccattggtccataatccattccttcaaatgaccagaaaaccatggaatcacatttgacaatgtatacaagagcttccttatatgtaactttgccttgaaaagttatgtgattagtttgctaagattttccaccagttaaacaaggagcaagctactcaccttgtgaagaaaatgtggtgaaagttcataaacctgggaagtgaacccagtgccagcatccatgattagagcccacagatttgagcaagatgttatgcaactgataaacagaccatcttcattccctttgtcaatgtgttgtacaagccttgaatctgcaacgttgtagtgatacctgcaaaatatagaacatgtatgttgcattgtactgcattaacaaaggtggatcatatagctaactataaactaaaactttcgggcctcataagaaaaagtacctttgtttcataggccgtctggcattataaacactaatccactgtgttgcaggcatacccatcctgatcttcttctttggttgttcatctgtctcttccatcaataagcgacctctcttttggccaactagatgtataagctttagagaaattacaaggaagattagtgcaaccaaagtcatgatttttaagcagtataacagattgcaatatatgattgtattgtaccttctgagcaccatcggtgttaattggcctgatatctggatttgggcccactacagtatcgaaaagggatatacactttgcatagttaggttcttcatcaaacttcaagttgaccacatactctacaaactccctaaagggttgtgggcaaaagcagcacaatgattctggagacgtagccattttctttttgcacacaaggaaacccttgttttcaccctgcaggcacacactatcaattatttaaatgtattactacaatcagaataaatggaatggtgggtccggcgaattacctgataaccttgccaaggtagacgcccccgtagaagaaaaactagtgtgtaagctagagattctaaatcatcccttcggctaccgattctccctagatgtgcatgaacactagcatagcgaactgtccccctgaaatagcagcaaaagcaaggcagagttactgatttgctataagcctacaacatgaagaatgagttggcattcaagacagaaattagggctctatttccatgcagaaacagccagtcaccaaacataatagtgaggagtgattgaccagcaccagtgccagccgcatttagtgctgttgagaagtaatgaataatggttgtacaggaacaagcagaatgcggggaaaaaaaagataaaacaaaatttaagtgaatgaaaataattgttggccagaaaccagtacaaagggtgacctgatttggctgcatcctaggactcaaccaaaaacaggaaacagaacctacgaaggaaatgccacagagcattcaatattatccataaaagcactagcgacaatgtaaatgatgcctattgattatcataaaatttccatctggtcacctgaaaacatcaggtcgctggtcatagtcaacgtggaggccagttgaagcatctctccacttggtagctgccatttaaagatagattaaactcaattaattcagactcctcaatctgctgctaccttaaaacaattgaatagacaatgatcgagcagttggttaatctgtgaagatttagttacctaaaccaagatcgacaaggaagagtctcttttcttcaggagttccaataggccctagcaagaaattttcaggtttcacatccccatgaacatatctgcgattgcaaaacattttctattacaacagaggaaataaaatgtattttggtggggaggggataataataattagagagatggcaaccaacccttttgaatgcattttctcaagtatggagatagcttcaatagcgatgcacgcaaccatctcaacagacattctgaaaaccaaaacaaactatgttagtgataaattagaagtctacataaatgttagctaaattggaaaactcacgtgtgagaattattattccaaacatcccaaagactgggtcccagcatatccataacctacatttttcataaaccaagttaattaaaattttggaaagggcaaaaagaaaacagtttctctcgtagtagtcaaaatgaggtgtcattactataacatagtattcgccttgacgtcctttatagtggactcgaggaaccccatgaatgccaccgatggcgctgtatatacgatggccatgataaaagtcaggtacctatatatagcatgcaacttgctatgcataatggcagatcatgaggcacatacttgtaaacctgccattcgtaaggaggcccatggttgcatcctttactggttctatgttcaaactttagcgccacctaccattcgaaagcacgatatttattttcaaccgttaataccatccacggttacaagtacagttttacaaataggctggcactaaatacctcagaagcacctggaccgttagctaacatgcggcggccaacatatacttggccaaatcctcctttaccaagctttttatcaactctatactttggtgaactgcccacctggacctgcacaaagccaaaacaaacagattagaaaaaaaaatcgttttgaataaatggagacaactgaagctaggatcttttgggatacaaacacgaaatggctaccgatcccaatcataactgtcgcttaacctctggctttacaagatgaaaacaatttagcttcgtggatgacgggtgaatctactgaataaatgttcaaaacggctaccaatcccaatcataaccgtgaaccgtcgctcaacctccggctttacaagatggaaacaaattagcttcacggctgacgggtgcatctacgtgttcggaacagctatcaatcccaaattcccaatcataacccttgcttagcctccggctttacaagatgaaaacaaattagcttcacggatgacgggtgcatctatagaataaatgttgtatgattgttgtatccagtccacgcacaggcctggttgatgattgctgcatccagtccacgcacaggcctagtaagcacaagtatcaaataagagaacatctcaccgtatcaggtactggagtggtattcccctcgtcctcgacggcctgcttgtcggcgctgcgcgccccgctgtccgggccttccatcttcttctctccgccgccttccctccccaaatccgcgacctcgatctcctcctccctcccctcttccgcctccggagcagcctcgacggcgacttctggctccttcctcctcgccgcccttcgcctcctcgccggcggtggggccggtgccgccgccgccgccgccgccggattctcctgcgcctctcgggccctcctcgccgcgctacgcagcacaggcatcctcagccatggagccccatatgccccccgcgcccccgccgcctcctcagattcctccgccaaacaccaggaacgccgccgatctcgggggagtgggtgggaagcgagcgatgcggcgacgctcgggtcgcggcgcgcggcggcggcggcggccctagcacggagacggctagggttggggtttgtatgcggatgcgatggaatgggggaggagacgggagggagggagggagggggaagcagatggtggtggtgctgacgtcacccgcggctagacgcggagcggagtac
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| CDS seq | atgcctgtgctgcgtagcgcggcgaggagggcccgagaggcgcaggagaatccggcggcggcggcggcggcggcaccggccccaccgccggcgaggaggcgaagggcggcgaggaggaaggagccagaagtcgccgtcgaggctgctccggaggcggaagaggggagggaggaggagatcgaggtcgcggatttggggagggaaggcggcggagagaagaagatggaaggcccggacagcggggcgcgcagcgccgacaagcaggccgtcgaggacgaggggaataccactccagtacctgatacggtccaggtgggcagttcaccaaagtatagagttgataaaaagcttggtaaaggaggatttggccaagtatatgttggccgccgcatgttagctaacggtccaggtgcttctgaggtggcgctaaagtttgaacatagaaccagtaaaggatgcaaccatgggcctccttacgaatggcaggtttacaacgccatcggtggcattcatggggttcctcgagtccactataaaggacgtcaaggcgaatactatgttatagttatggatatgctgggacccagtctttgggatgtttggaataataattctcacacaatgtctgttgagatggttgcgtgcatcgctattgaagctatctccatacttgagaaaatgcattcaaaaggatatgttcatggggatgtgaaacctgaaaatttcttgctagggcctattggaactcctgaagaaaagagactcttccttgtcgatcttggtttagctaccaagtggagagatgcttcaactggcctccacgttgactatgaccagcgacctgatgttttcagggggacagttcgctatgctagtgttcatgcacatctagggagaatcggtagccgaagggatgatttagaatctctagcttacacactagtttttcttctacgggggcgtctaccttggcaaggttatcagggtgaaaacaagggtttccttgtgtgcaaaaagaaaatggctacgtctccagaatcattgtgctgcttttgcccacaaccctttagggagtttgtagagtatgtggtcaacttgaagtttgatgaagaacctaactatgcaaagtgtatatcccttttcgatactgtagtgggcccaaatccagatatcaggccaattaacaccgatggtgctcagaagcttatacatctagttggccaaaagagaggtcgcttattgatggaagagacagatgaacaaccaaagaagaagatcaggatgggtatgcctgcaacacagtggattagtgtttataatgccagacggcctatgaaacaaaggtatcactacaacgttgcagattcaaggcttgtacaacacattgacaaagggaatgaagatggtctgtttatcagttgcataacatcttgctcaaatctgtgggctctaatcatggatgctggcactgggttcacttcccaggtttatgaactttcaccacattttcttcacaaggaatggattatggaccaatgggaaaggaactactatataactgcacttgctggagcaaataatgggagttccctggtagtgatgtcaaaaggaacaatgtatacacaacaatcctacaaagtaagtgatactttccctttcaaatggataaacaagaaatggagggacggtttttatgtgacttccatggcaacagctggaagtagatgggcagttgttatgtcgcgtaatgctggattttctgatcaggttgtcgaactggacttcctataccccagtgagggaattcaccagagatgggacaatggttaccggataactgcaactgctgcaacctgggatcaggctgcattcgttttaagcgtcccaagaaggaagcctacagatgaaactcaagagacgctgagaacatctgctttccctagtcaacatgtcaaggagaaatggtccaagaatctctaccttgcatcagtatgctatggacgtactgtatcctag
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| Protein seq | MPVLRSAARRAREAQENPAAAAAAAPAPPPARRRRAARRKEPEVAVEAAPEAEEGREEEIEVADLGREGGGEKKMEGPDSGARSADKQAVEDEGNTTPVPDTVQVGSSPKYRVDKKLGKGGFGQVYVGRRMLANGPGASEVALKFEHRTSKGCNHGPPYEWQVYNAIGGIHGVPRVHYKGRQGEYYVIVMDMLGPSLWDVWNNNSHTMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPIGTPEEKRLFLVDLGLATKWRDASTGLHVDYDQRPDVFRGTVRYASVHAHLGRIGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFREFVEYVVNLKFDEEPNYAKCISLFDTVVGPNPDIRPINTDGAQKLIHLVGQKRGRLLMEETDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADSRLVQHIDKGNEDGLFISCITSCSNLWALIMDAGTGFTSQVYELSPHFLHKEWIMDQWERNYYITALAGANNGSSLVVMSKGTMYTQQSYKVSDTFPFKWINKKWRDGFYVTSMATAGSRWAVVMSRNAGFSDQVVELDFLYPSEGIHQRWDNGYRITATAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSQHVKEKWSKNLYLASVCYGRTVS |
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| Function | Casein kinase 1-like protein HD16 [UniProtKB/Swiss-Prot:Q852L0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0032820 | OsKeNa_01g0032820.01 | Chr01 | 31281143 | 31285976 | - | NAM | ||
| CDS seq | atgcctgtgctgcgtagcgcggcgaggagggcccgagaggcgcaggagaatccggcggcggcggcggcggcggcaccggccccaccgccggcgaggaggcgaagggcggcgaggaggaaggagccagaagtcgccgtcgaggctgctccggaggcggaagaggggagggaggaggagatcgaggtcgcggatttggggagggaaggcggcggagagaagaagatggaaggcccggacagcggggcgcgcagcgccgacaagcaggccgtcgaggacgaggggaataccactccagtacctgatacggtccaggtgggcagttcaccaaagtatagagttgataaaaagcttggtaaaggaggatttggccaagtatatgttggccgccgcatgttagctaacggtccaggtgcttctgaggtggcgctaaagtttgaacatagaaccagtaaaggatgcaaccatgggcctccttacgaatggcaggtttacaacgccatcggtggcattcatggggttcctcgagtccactataaaggacgtcaaggcgaatactatgttatagttatggatatgctgggacccagtctttgggatgtttggaataataattctcacacaatgtctgttgagatggttgcgtgcatcgctattgaagctatctccatacttgagaaaatgcattcaaaaggatatgttcatggggatgtgaaacctgaaaatttcttgctagggcctattggaactcctgaagaaaagagactcttccttgtcgatcttggtttagctaccaagtggagagatgcttcaactggcctccacgttgactatgaccagcgacctgatgttttcagggggacagttcgctatgctagtgttcatgcacatctagggagaatcggtagccgaagggatgatttagaatctctagcttacacactagtttttcttctacgggggcgtctaccttggcaaggttatcagggtgaaaacaagggtttccttgtgtgcaaaaagaaaatggctacgtctccagaatcattgtgctgcttttgcccacaaccctttagggagtttgtagagtatgtggtcaacttgaagtttgatgaagaacctaactatgcaaagtgtatatcccttttcgatactgtagtgggcccaaatccagatatcaggccaattaacaccgatggtgctcagaagcttatacatctagttggccaaaagagaggtcgcttattgatggaagagacagatgaacaaccaaagaagaagatcaggatgggtatgcctgcaacacagtggattagtgtttataatgccagacggcctatgaaacaaaggtatcactacaacgttgcagattcaaggcttgtacaacacattgacaaagggaatgaagatggtctgtttatcagttgcataacatcttgctcaaatctgtgggctctaatcatggatgctggcactgggttcacttcccaggtttatgaactttcaccacattttcttcacaaggaatggattatggaccaatgggaaaggaactactatataactgcacttgctggagcaaataatgggagttccctggtagtgatgtcaaaaggaacaatgtatacacaacaatcctacaaagtaagtgatactttccctttcaaatggataaacaagaaatggagggacggtttttatgtgacttccatggcaacagctggaagtagatgggcagttgttatgtcgcgtaatgctggattttctgatcaggttgtcgaactggacttcctataccccagtgagggaattcaccagagatgggacaatggttaccggataactgcaactgctgcaacctgggatcaggctgcattcgttttaagcgtcccaagaaggaagcctacagatgaaactcaagagacgctgagaacatctgctttccctagtcaacatgtcaaggagaaatggtccaagaatctctaccttgcatcagtatgctatggacgtactgtatcctag
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| Protein seq | MPVLRSAARRAREAQENPAAAAAAAPAPPPARRRRAARRKEPEVAVEAAPEAEEGREEEIEVADLGREGGGEKKMEGPDSGARSADKQAVEDEGNTTPVPDTVQVGSSPKYRVDKKLGKGGFGQVYVGRRMLANGPGASEVALKFEHRTSKGCNHGPPYEWQVYNAIGGIHGVPRVHYKGRQGEYYVIVMDMLGPSLWDVWNNNSHTMSVEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPIGTPEEKRLFLVDLGLATKWRDASTGLHVDYDQRPDVFRGTVRYASVHAHLGRIGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPESLCCFCPQPFREFVEYVVNLKFDEEPNYAKCISLFDTVVGPNPDIRPINTDGAQKLIHLVGQKRGRLLMEETDEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADSRLVQHIDKGNEDGLFISCITSCSNLWALIMDAGTGFTSQVYELSPHFLHKEWIMDQWERNYYITALAGANNGSSLVVMSKGTMYTQQSYKVSDTFPFKWINKKWRDGFYVTSMATAGSRWAVVMSRNAGFSDQVVELDFLYPSEGIHQRWDNGYRITATAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSQHVKEKWSKNLYLASVCYGRTVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.933950 | 4.121740 | 8.294056 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0744300 | RBH | 7.279528 | 4.823010 | 9.355731 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54100 | RBH | 4.991905 | 3.343642 | 2.478136 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0744300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033320 | RBH | 1.767467 | 24.193602 | 16.613504 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023730 | SBH | 0.321014 | 6.800213 | 3.726217 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033260 | RBH | 5.544127 | 21.684017 | 22.778006 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032530 | RBH | 0.745250 | 0.515261 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032310 | RBH | 15.988902 | 31.673191 | 44.203323 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0517000 | RBH | 16.3303635 | 54.3183535 | 66.148804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032020 | RBH | 1.223880 | 2.163363 | 3.656969 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0510700 | RBH | 21.6918685 | 58.358316 | 56.2697375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032200 | RBH | 0.708848 | 0.408965 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032250 | RBH | 0.875958 | 22.169621 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032480 | RBH | 13.759450 | 23.058773 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032570 | RBH | 2.630830 | 1.741636 | 4.792051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032390 | RBH | 0.871373 | 12.741763 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032840 | RBH | 1.985475 | 6.857570 | 7.849109 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032480 | RBH | 6.253699 | 45.790035 | 20.124439 |
