Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0031940 | OGI:01091910 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:30594400-30599239 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaggaaaacccaatcgcatccggtgtccacgagcgcacgcgcggaatcaggcggcggatagcgccaaggccacggtcgtttggtgctctcgtgaatccgatcgggcccagggcggggggcggccgcggcttccgtcaccgcgagcacacacaccctcatccgcacggacacgggggcgtgcgcgttcttatccattggaccatttccctcttcttccgccgcggtgagccggagcggcgcggaagggtggggcacgcacgccacgcggcggaagcggtgcgcccgatctcctttgcccgcgtcgatccacgtcgacccggtcaagccattatccccaacctcaccaatcctctaccattattattatatcacacacgtcatcgcgcccccttctccttcctctcctcttctctcctctcctttccccaattgcttcctcctcctcctcctccttctgcacctgtccgattcggttcgattcggtttgattgggttccaatctgcggaggagcggcaacgagctaggcggaacagagggttggtcgtcggatccgtggcatggagatctcgttcgaggcgtgggagggcgtgcagcggcacggccaggacatcgcggaccgcctcgcgcaggggttcaccggcctgctccaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccgcggtgcccgggccgggaaggagttcttccccgccgcggccgtcgcctccgtcatcgacatcggcgggaggctcggccaggctggcgtggagattggggcgtccgtcggtggcgccgtgcagcacgccgtgcgccagctgcccctgccgttccggaacggccagatccggcgccgcaagctgccgccgcagcctcaggcgccctcgcccgcggctgcggtgggtgaggcggcggtggggctctcggtagagagggctgtcgacaggtgccctctagaggcagctgcggcggccgccgctgccgcaaccggtagcgctgcagcgtccacggtcagtggtgctgtgggcggagatgacgtagatgaggaagatgagggattcggctgcgagattggtacttttggaaactttaagaagtctaaggtacgatccaattcgaatttttagcatggatgctggcttttagtgtaatttgcatctcaatttagtgcgcagccatagtttaggattgtctaccgtcagaactgaaattaattattcaaatatccttataggaagggtgtgatttgtctcgatgttcaatctaatttaggtgtttcatttactaaaatgttatgtttattattagaacaaatataggcaaatggtcacgcatctgtgacgaattaatttaaatcagtgatgcttggaggtgtttggtaactaagttgtgatgtcttgttggcagtgcgcatggtaaatggatgattttacatgtaatttatgaattgaatacataacttgtaactgcagtttagtgatacttttagtattaaagtgttcttttgactgatcggacttacagttgtcagtaagtactgaaattaaacttcacaagtatgaagaaataggtgtgttaattcttctgcgagttatgattatctcagctagacttctagtgtgaggtgttgcaaccctatacctgaattactcaacatagtacttagctcttctgttggtcttcagggtacagtaaatgtctcggcttcatacaataccaggaaccacgacattgagagttctgttgttgcacgtggagacctttggaggctggaggcatcacgcagcagttcaacttccggaaacgatagctcacctctataccttgttcagttgggaccgttactttttgtccgagactctacactccttttgcctgttcatctatcgaagcaacatctgctttggtatggttatgatcgcaaggtactcatatctttctgtttctttacacatactgattttccctatgagccgttataatgctttatccttctgtgttctctttcttttattattttcttgtagttagtaaatttctcactaagaatgatattattacagaatggagtccattctctctgccctgctttttggtcaaaacatcggaaatggttgatgatgtcaatggtttgcctcaatccagtagcttgtgtaagtatgactatcttttggttgaattctgcattatagtgttcacattatctcatatctcgttactggttataatgagtttaccagtaatcaccaacctacatgaataactctaaaagcacccaagatttactgacctttaagtttcttttgttgcattctgttgtgcaattgaagaccgtgcttcttttttatgttgatagtttgtgtgtgaagtctgtttagtcagcttctgcttcatgcttaagcatgcattatcttcttggcaatctgctagatctgtttaatataacctcccaccattgttttttgtatttgaaactggaatattgatactatctaacagagtaacatggttatttgttacagtccttcatggacctgcagttccccaatggacaactaacatatgttgctggcgaggggattacagcaagtggttttcttccattatttggtgggttgcttcaagctcatgggaaataccctggagaaactagagtcagcttctcttgcaaggttagcatgctccctatttatcattttctcataaattagttaattgtgatctctgaaaattgtgagctgctcctgcaaagctgcagtgcccctgctttttcttagaaaaaaaattctaatgcagtgtggagtaacggtatgatttaagcaatgactacttttaaacttcacatcattgttaatcggcttctgatcagaaatatgttatgtttattgatagtatcacaaccttttggttggaacactctgcacgctcagatgtttctcattgtttatgagttcatttcatgaattaggaagtgtgcacacttgctttcacaaacatggctattttctgttatttgtgttattatttattactatgacaacttctatatgatcagtgtaccatcatcttttctttttactgcataaccagcactgatctgttttagctctcttctgctgtgttcgttctatattggtaaagtggtctttcacctgtggtaactcTtttttttttcttaaagaataagcaaggcaccaggttcactcctatgtttcaatggcctgacaagtctctgtcatttggagttactcaagccttagcatggaaaagatctggtctcatggtgaggcccagtgtgcaagtcaggtagtttacttagaacactcaagcaattccaatcacttttttttgtaccataatttaccacttttgagccgttgaacagaaaacaaacagtaattactttgcattatctctacaattttagccttggtatcatgctaatggcatgcatctattttggttgaatttgttaaatgactagcctcgatagatgttattgttttgacctattgcagagttgatgcttctttgccgttgctcgctctttttattaccatgtaaaatagtagttcttgtgcttgccagtatattgtattgattgctagtgatcatttgttgagtcctatagcaagcaccctttttttagttctctatccttgattttcccttttttaaacactcatgttaatggtattttattgaacagtttatgccctacatttggaggaaatgatcctggggtacgtgcagaggttatccattcattgaaagaggaattgaatgtaatgtgcggtttgtcttgctcaagacatccatcagcctttactgctctgtctgtaagttcttatcgaagcaaagcctctgcttggttctattgagttgcttggctctaactgaacttttaaatgacagattgggagatccaagtggaatggtcaaatgggcagttccggagtggtcgttaccttggaaacaccccttaataacattggaaggccatctttatccgttcaattgaatggaggttttgaaatttagcattctgcgcagtaagttgtatataccactgtacatagccctactaatgtccatgtcctatctctgtggagatggctgtgcaacgcctatgaatggtatctggaagtggtttctgctcgtttttgttgtcagactcataggtgataagtctcagctcaacaaatcaactggtttattccccatgccaacaaaggcatccatatatataccttaaagagatggtgatcaagtgtgtaggcagttcaaggtttcttttgaagaaattggagagaaaagctgcaagatcagcacttaatactttttggaagttgggagaaggaaaaggctatgaggtgttttgcggctgtgcaagaagccaagacgaatgtggctttgcaagaagccgaagatgttcacccagaagctatgttcctttggagcaggactgaccatactggatgtttgctgatagtgaattgcttactggcttttgctaattgtgatggataattattatccatcacaattgatcgttagacgatctcattgctgagacaagctttgatggatgaattggtgtgcttttttcccctgcactcttgtattcctcatgtaagactcatgatcagtgaagctaagaaatgtctactgggatgggatggaggacctgtctggtggcattgtcaaacccacattgttcttgaacacatgctgagtgattgctgtttccacgtcactgaaaaacgagttctgaagctc
More
|
||||||||||
| CDS seq | atggagatctcgttcgaggcgtgggagggcgtgcagcggcacggccaggacatcgcggaccgcctcgcgcaggggttcaccggcctgctccaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccgcggtgcccgggccgggaaggagttcttccccgccgcggccgtcgcctccgtcatcgacatcggcgggaggctcggccaggctggcgtggagattggggcgtccgtcggtggcgccgtgcagcacgccgtgcgccagctgcccctgccgttccggaacggccagatccggcgccgcaagctgccgccgcagcctcaggcgccctcgcccgcggctgcggtgggtgaggcggcggtggggctctcggtagagagggctgtcgacaggtgccctctagaggcagctgcggcggccgccgctgccgcaaccggtagcgctgcagcgtccacggtcagtggtgctgtgggcggagatgacgtagatgaggaagatgagggattcggctgcgagattggtacttttggaaactttaagaagtctaagggtacagtaaatgtctcggcttcatacaataccaggaaccacgacattgagagttctgttgttgcacgtggagacctttggaggctggaggcatcacgcagcagttcaacttccggaaacgatagctcacctctataccttgttcagttgggaccgttactttttgtccgagactctacactccttttgcctgttcatctatcgaagcaacatctgctttggtatggttatgatcgcaagaatggagtccattctctctgccctgctttttggtcaaaacatcggaaatggttgatgatgtcaatggtttgcctcaatccagtagcttgttccttcatggacctgcagttccccaatggacaactaacatatgttgctggcgaggggattacagcaagtggttttcttccattatttggtgggttgcttcaagctcatgggaaataccctggagaaactagagtcagcttctcttgcaagaataagcaaggcaccaggttcactcctatgtttcaatggcctgacaagtctctgtcatttggagttactcaagccttagcatggaaaagatctggtctcatggtgaggcccagtgtgcaagtcagtttatgccctacatttggaggaaatgatcctggggtacgtgcagaggttatccattcattgaaagaggaattgaatgtaatgtgcggtttgtcttgctcaagacatccatcagcctttactgctctgtctattgggagatccaagtggaatggtcaaatgggcagttccggagtggtcgttaccttggaaacaccccttaataacattggaaggccatctttatccgttcaattgaatggaggttttgaaatttag
More
|
||||||||||
| Protein seq | MEISFEAWEGVQRHGQDIADRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFPAAAVASVIDIGGRLGQAGVEIGASVGGAVQHAVRQLPLPFRNGQIRRRKLPPQPQAPSPAAAVGEAAVGLSVERAVDRCPLEAAAAAAAAATGSAAASTVSGAVGGDDVDEEDEGFGCEIGTFGNFKKSKGTVNVSASYNTRNHDIESSVVARGDLWRLEASRSSSTSGNDSSPLYLVQLGPLLFVRDSTLLLPVHLSKQHLLWYGYDRKNGVHSLCPAFWSKHRKWLMMSMVCLNPVACSFMDLQFPNGQLTYVAGEGITASGFLPLFGGLLQAHGKYPGETRVSFSCKNKQGTRFTPMFQWPDKSLSFGVTQALAWKRSGLMVRPSVQVSLCPTFGGNDPGVRAEVIHSLKEELNVMCGLSCSRHPSAFTALSIGRSKWNGQMGSSGVVVTLETPLNNIGRPSLSVQLNGGFEI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0031940 | OsKeNa_01g0031940.01 | Chr01 | 30594400 | 30599232 | + | NAM | ||
| CDS seq | atggagatctcgttcgaggcgtgggagggcgtgcagcggcacggccaggacatcgcggaccgcctcgcgcaggggttcaccggcctgctccaggcgcagccgccgcagttcccgtggccggcggcgtcgcacaagcggattcccttcgagatcgacctccccgtggtccccttcggcgcctcccgcggtgcccgggccgggaaggagttcttccccgccgcggccgtcgcctccgtcatcgacatcggcgggaggctcggccaggctggcgtggagattggggcgtccgtcggtggcgccgtgcagcacgccgtgcgccagctgcccctgccgttccggaacggccagatccggcgccgcaagctgccgccgcagcctcaggcgccctcgcccgcggctgcggtgggtgaggcggcggtggggctctcggtagagagggctgtcgacaggtgccctctagaggcagctgcggcggccgccgctgccgcaaccggtagcgctgcagcgtccacggtcagtggtgctgtgggcggagatgacgtagatgaggaagatgagggattcggctgcgagattggtacttttggaaactttaagaagtctaagggtacagtaaatgtctcggcttcatacaataccaggaaccacgacattgagagttctgttgttgcacgtggagacctttggaggctggaggcatcacgcagcagttcaacttccggaaacgatagctcacctctataccttgttcagttgggaccgttactttttgtccgagactctacactccttttgcctgttcatctatcgaagcaacatctgctttggtatggttatgatcgcaagaatggagtccattctctctgccctgctttttggtcaaaacatcggaaatggttgatgatgtcaatggtttgcctcaatccagtagcttgttccttcatggacctgcagttccccaatggacaactaacatatgttgctggcgaggggattacagcaagtggttttcttccattatttggtgggttgcttcaagctcatgggaaataccctggagaaactagagtcagcttctcttgcaagaataagcaaggcaccaggttcactcctatgtttcaatggcctgacaagtctctgtcatttggagttactcaagccttagcatggaaaagatctggtctcatggtgaggcccagtgtgcaagtcagtttatgccctacatttggaggaaatgatcctggggtacgtgcagaggttatccattcattgaaagaggaattgaatgtaatgtgcggtttgtcttgctcaagacatccatcagcctttactgctctgtctattgggagatccaagtggaatggtcaaatgggcagttccggagtggtcgttaccttggaaacaccccttaataacattggaaggccatctttatccgttcaattgaatggaggttttgaaatttag
More
|
|||||||
| Protein seq | MEISFEAWEGVQRHGQDIADRLAQGFTGLLQAQPPQFPWPAASHKRIPFEIDLPVVPFGASRGARAGKEFFPAAAVASVIDIGGRLGQAGVEIGASVGGAVQHAVRQLPLPFRNGQIRRRKLPPQPQAPSPAAAVGEAAVGLSVERAVDRCPLEAAAAAAAAATGSAAASTVSGAVGGDDVDEEDEGFGCEIGTFGNFKKSKGTVNVSASYNTRNHDIESSVVARGDLWRLEASRSSSTSGNDSSPLYLVQLGPLLFVRDSTLLLPVHLSKQHLLWYGYDRKNGVHSLCPAFWSKHRKWLMMSMVCLNPVACSFMDLQFPNGQLTYVAGEGITASGFLPLFGGLLQAHGKYPGETRVSFSCKNKQGTRFTPMFQWPDKSLSFGVTQALAWKRSGLMVRPSVQVSLCPTFGGNDPGVRAEVIHSLKEELNVMCGLSCSRHPSAFTALSIGRSKWNGQMGSSGVVVTLETPLNNIGRPSLSVQLNGGFEI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0031940 | OsKeNa_01g0031940.02 | Chr01 | 30598893 | 30599239 | + | IsoSeq | ||
| CDS seq | cacccagaagctatgttcctttggagcaggactgaccatactggatgtttgctgatagtgaattgcttactggcttttgctaattgtgat |
|||||||
| Protein seq | HPEAMFLWSRTDHTGCLLIVNCLLAFANCD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.267083 | 5.603878 | 3.497242 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0729900 | RBH | 5.269885 | 3.283009 | 7.482832 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g52920 | RBH | 1.523512 | 1.751198 | 1.547767 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0729900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032440 | RBH | 5.037811 | 17.549051 | 7.839014 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024430 | RBH | 2.900249 | 4.169965 | 4.056342 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032410 | RBH | 10.560480 | 17.149958 | 11.349466 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031650 | RBH | 1.328295 | 0.468750 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031360 | RBH | 23.557215 | 9.523388 | 25.460758 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0505700 | RBH | 47.2747615 | 92.9455415 | 124.2825315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031070 | RBH | 2.483260 | 1.600015 | 2.072372 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0497800 | RBH | 26.883766 | 65.1247805 | 29.284067 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031310 | RBH | 1.049520 | 0.178709 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031360 | RBH | 3.177350 | 18.396091 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031540 | RBH | 33.650047 | 31.583445 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031720 | RBH | 7.662292 | 2.601075 | 2.521390 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031490 | RBH | 3.105049 | 14.630746 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031930 | RBH | 4.495371 | 2.942887 | 5.471950 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031590 | RBH | 15.158546 | 41.187935 | 16.362104 |
