Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0030960 | OGI:01089420 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:29832354-29833398 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttctttgccaaggcgctgctgaatttccaagaggaggcagcacggctgaccatatacaaccccacgcccagcggcggcaatggccgatttgaagatcggcaggccagtggctggtgtggcttccctcaaccagccactggctgaatcatgcaaagccagcgcctcccaaccaggagacgactcgaattccgagtgctcgtccggcgcgtcgtcggccattgccctgggcatcgttgccgctaactgtggcgctgccatctaccactcgtggcacgacccctggtccgtggcgttcgtggtcgcctccttcctcatcctcgttttgttattcctcgcgcttcgtgtgtacgagagctcacctcgcggctcacgccgaagtctccatgtcaaggccggcgtttgggccctttccacggcgctcacgatcatgttttcttacaaagtggctgcgtttatgcctttcccagtagccgctgtcgtttgggttacggctggctccacgatttttgcaggattctacatgttgttcttctgccgcgacgaggtcgagcccgcggtggaggagaagccagcaaaggtatctgacatggcttagagtgaccgaccgaagagaaatcaaatcacctgcgggctgcggctgcggctgcggctgcggcttggttccgtagaggcaggggggaggctgctcgccagctctgctgcggggcccagatacgccggcgacaccaaaaactccttagcgctgaacctccggtctccggaccatcctgtttgatgctgattcaccggcagttcctggttgatacaggcatagtttgatgccgattcaacggtacttcctgattgatacgggcatacggcaccttccaaagctccaatttccagaatgatacgggaacagcagaatgggctcggattagacagtagagcatgcacgagtagttaggttctaattatccagttttgtgccataaattgatcctaatttcgatgtaaactcctgtattatcagtttgagtaattcgttcatatgtagtatcctg
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| CDS seq | atggccgatttgaagatcggcaggccagtggctggtgtggcttccctcaaccagccactggctgaatcatgcaaagccagcgcctcccaaccaggagacgactcgaattccgagtgctcgtccggcgcgtcgtcggccattgccctgggcatcgttgccgctaactgtggcgctgccatctaccactcgtggcacgacccctggtccgtggcgttcgtggtcgcctccttcctcatcctcgttttgttattcctcgcgcttcgtgtgtacgagagctcacctcgcggctcacgccgaagtctccatgtcaaggccggcgtttgggccctttccacggcgctcacgatcatgttttcttacaaagtggctgcgtttatgcctttcccagtagccgctgtcgtttgggttacggctggctccacgatttttgcaggattctacatgttgttcttctgccgcgacgaggtcgagcccgcggtggaggagaagccagcaaaggtatctgacatggcttag
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| Protein seq | MADLKIGRPVAGVASLNQPLAESCKASASQPGDDSNSECSSGASSAIALGIVAANCGAAIYHSWHDPWSVAFVVASFLILVLLFLALRVYESSPRGSRRSLHVKAGVWALSTALTIMFSYKVAAFMPFPVAAVVWVTAGSTIFAGFYMLFFCRDEVEPAVEEKPAKVSDMA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0030960 | OsKeNa_01g0030960.01 | Chr01 | 29832354 | 29833398 | + | NAM | ||
| CDS seq | atggccgatttgaagatcggcaggccagtggctggtgtggcttccctcaaccagccactggctgaatcatgcaaagccagcgcctcccaaccaggagacgactcgaattccgagtgctcgtccggcgcgtcgtcggccattgccctgggcatcgttgccgctaactgtggcgctgccatctaccactcgtggcacgacccctggtccgtggcgttcgtggtcgcctccttcctcatcctcgttttgttattcctcgcgcttcgtgtgtacgagagctcacctcgcggctcacgccgaagtctccatgtcaaggccggcgtttgggccctttccacggcgctcacgatcatgttttcttacaaagtggctgcgtttatgcctttcccagtagccgctgtcgtttgggttacggctggctccacgatttttgcaggattctacatgttgttcttctgccgcgacgaggtcgagcccgcggtggaggagaagccagcaaaggtatctgacatggcttag
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| Protein seq | MADLKIGRPVAGVASLNQPLAESCKASASQPGDDSNSECSSGASSAIALGIVAANCGAAIYHSWHDPWSVAFVVASFLILVLLFLALRVYESSPRGSRRSLHVKAGVWALSTALTIMFSYKVAAFMPFPVAAVVWVTAGSTIFAGFYMLFFCRDEVEPAVEEKPAKVSDMA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.122526 | 2.051380 | 1.142358 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0714600 | RBH | 3.611168 | 1.977299 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51670 | RBH | 2.420555 | 1.318187 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0714600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031370 | RBH | 0.0 | 0.0 | 1.408157 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031390 | RBH | 0.653506 | 0.0 | 0.670139 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030290 | RBH | 0.0 | 7.268184 | 6.581426 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0491300 | RBH | 5.344832 | 42.3135815 | 8.297924 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030010 | RBH | 0.093755 | 0.180127 | 1.062947 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0483000 | RBH | 7.31773 | 77.2105445 | 6.6006905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030250 | RBH | 0.160551 | 0.165306 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030200 | RBH | 0.098322 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030490 | RBH | 0.0 | 7.536639 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030670 | RBH | 0.092282 | 0.423610 | 0.299807 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030420 | RBH | 0.0 | 2.562765 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030880 | RBH | 0.342077 | 2.511346 | 1.370807 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030560 | RBH | 0.0 | 7.660947 | 4.885821 |
