Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0027480 | OGI:01082090 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:27100936-27102277 | ||||||||
| Gene Symbol | Os_F0640 | ||||||||||
| DNA seq | ctgaaaccctacagaactgccagcgatttattaatggagtaaatcccaaactacaggcagtaacacgctggaatacccactgaataatcaggggacgagccagatcggaggcgagcagtctgcagtgaattcacgggggaattggcgagcgccaggcctgatcttctcgcccttcctgtacatgcccatgtcgacgttgcagtacgtgctcccgttgttgagcaccatggacaggtcgaggttcgcgtcgtcgaggaagtagatggtgtcctcctggagcatggggaactgcgccacatcgacggacctggagcagctgcggccgaggaagagcgcgcggccggtcagctcggggatctccacccaccagcacggggtggcggcgcgcctgggctccgccggctcgccgaacgtcagctcgaagatccggaacatgcgggtgcggcgccgcacgacggggttgccggtgtagtggcgcagcaccatgagcagcttcccgcgggactcggcgaggtagcgggtcgcgatgaacgtcggcggcagggcgtcgtcgggctggtagtcgtcgcggggccgcagcgagtagcgggtgcaggcgagcttcagcggcgcgccggggcggtggggcgccgtgggcgcgtacaccaggacctcctccttgttggtgaggacgtggaagccctgcagcagcgctcccctgtggaagatgaggtcctggatgatgtccatgtcgcgccggtacgcggtccagctggtggacagcgacgccggctggcagaaggcgatgttggaggcgctggacacgtgcgcggcggcgatgcagtacggcgaggtgggagggcaggagaagacgacggtgcggatgagcatgtggtggcgggtgaagccggcggccaacgcgaactggtcgtggttgccgccgggggggacctcgaccctcagcttctccgggagggggagcctcacgccggtgaagaggttgacgaccgcgaagcctcgccacgtatcggcggcgaccgcggcccagccaccgtcgtggacgccgcagaagcgcgtgccgcggacgccatcggggaggcgcatgcggcgcgtggcgccagagtggaggctgaagaaggacggcgcgtcgcgggccgggaggaggagccacgggacaccgcgctgcggggcgtcggcgtagggcgccgcgtcacgccacgcgcggcagacggccgagaagcaggcgcggtcggcaaggcagttgagctgcaggacgattatggcgagtagctcgggcgggaggccatccgaccacgcgcggcgagacggacaagccatgagatgagatggaaccggtggaggt
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| CDS seq | atggcttgtccgtctcgccgcgcgtggtcggatggcctcccgcccgagctactcgccataatcgtcctgcagctcaactgccttgccgaccgcgcctgcttctcggccgtctgccgcgcgtggcgtgacgcggcgccctacgccgacgccccgcagcgcggtgtcccgtggctcctcctcccggcccgcgacgcgccgtccttcttcagcctccactctggcgccacgcgccgcatgcgcctccccgatggcgtccgcggcacgcgcttctgcggcgtccacgacggtggctgggccgcggtcgccgccgatacgtggcgaggcttcgcggtcgtcaacctcttcaccggcgtgaggctccccctcccggagaagctgagggtcgaggtcccccccggcggcaaccacgaccagttcgcgttggccgccggcttcacccgccaccacatgctcatccgcaccgtcgtcttctcctgccctcccacctcgccgtactgcatcgccgccgcgcacgtgtccagcgcctccaacatcgccttctgccagccggcgtcgctgtccaccagctggaccgcgtaccggcgcgacatggacatcatccaggacctcatcttccacaggggagcgctgctgcagggcttccacgtcctcaccaacaaggaggaggtcctggtgtacgcgcccacggcgccccaccgccccggcgcgccgctgaagctcgcctgcacccgctactcgctgcggccccgcgacgactaccagcccgacgacgccctgccgccgacgttcatcgcgacccgctacctcgccgagtcccgcgggaagctgctcatggtgctgcgccactacaccggcaaccccgtcgtgcggcgccgcacccgcatgttccggatcttcgagctgacgttcggcgagccggcggagcccaggcgcgccgccaccccgtgctggtgggtggagatccccgagctgaccggccgcgcgctcttcctcggccgcagctgctccaggtccgtcgatgtggcgcagttccccatgctccaggaggacaccatctacttcctcgacgacgcgaacctcgacctgtccatggtgctcaacaacgggagcacgtactgcaacgtcgacatgggcatgtacaggaagggcgagaagatcaggcctggcgctcgccaattcccccgtgaattcactgcagactgctcgcctccgatctggctcgtcccctga
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| Protein seq | MACPSRRAWSDGLPPELLAIIVLQLNCLADRACFSAVCRAWRDAAPYADAPQRGVPWLLLPARDAPSFFSLHSGATRRMRLPDGVRGTRFCGVHDGGWAAVAADTWRGFAVVNLFTGVRLPLPEKLRVEVPPGGNHDQFALAAGFTRHHMLIRTVVFSCPPTSPYCIAAAHVSSASNIAFCQPASLSTSWTAYRRDMDIIQDLIFHRGALLQGFHVLTNKEEVLVYAPTAPHRPGAPLKLACTRYSLRPRDDYQPDDALPPTFIATRYLAESRGKLLMVLRHYTGNPVVRRRTRMFRIFELTFGEPAEPRRAATPCWWVEIPELTGRALFLGRSCSRSVDVAQFPMLQEDTIYFLDDANLDLSMVLNNGSTYCNVDMGMYRKGEKIRPGARQFPREFTADCSPPIWLVP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0027480 | OsKeNa_01g0027480.01 | Chr01 | 27100936 | 27102277 | - | NAM | ||
| CDS seq | atggcttgtccgtctcgccgcgcgtggtcggatggcctcccgcccgagctactcgccataatcgtcctgcagctcaactgccttgccgaccgcgcctgcttctcggccgtctgccgcgcgtggcgtgacgcggcgccctacgccgacgccccgcagcgcggtgtcccgtggctcctcctcccggcccgcgacgcgccgtccttcttcagcctccactctggcgccacgcgccgcatgcgcctccccgatggcgtccgcggcacgcgcttctgcggcgtccacgacggtggctgggccgcggtcgccgccgatacgtggcgaggcttcgcggtcgtcaacctcttcaccggcgtgaggctccccctcccggagaagctgagggtcgaggtcccccccggcggcaaccacgaccagttcgcgttggccgccggcttcacccgccaccacatgctcatccgcaccgtcgtcttctcctgccctcccacctcgccgtactgcatcgccgccgcgcacgtgtccagcgcctccaacatcgccttctgccagccggcgtcgctgtccaccagctggaccgcgtaccggcgcgacatggacatcatccaggacctcatcttccacaggggagcgctgctgcagggcttccacgtcctcaccaacaaggaggaggtcctggtgtacgcgcccacggcgccccaccgccccggcgcgccgctgaagctcgcctgcacccgctactcgctgcggccccgcgacgactaccagcccgacgacgccctgccgccgacgttcatcgcgacccgctacctcgccgagtcccgcgggaagctgctcatggtgctgcgccactacaccggcaaccccgtcgtgcggcgccgcacccgcatgttccggatcttcgagctgacgttcggcgagccggcggagcccaggcgcgccgccaccccgtgctggtgggtggagatccccgagctgaccggccgcgcgctcttcctcggccgcagctgctccaggtccgtcgatgtggcgcagttccccatgctccaggaggacaccatctacttcctcgacgacgcgaacctcgacctgtccatggtgctcaacaacgggagcacgtactgcaacgtcgacatgggcatgtacaggaagggcgagaagatcaggcctggcgctcgccaattcccccgtgaattcactgcagactgctcgcctccgatctggctcgtcccctga
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| Protein seq | MACPSRRAWSDGLPPELLAIIVLQLNCLADRACFSAVCRAWRDAAPYADAPQRGVPWLLLPARDAPSFFSLHSGATRRMRLPDGVRGTRFCGVHDGGWAAVAADTWRGFAVVNLFTGVRLPLPEKLRVEVPPGGNHDQFALAAGFTRHHMLIRTVVFSCPPTSPYCIAAAHVSSASNIAFCQPASLSTSWTAYRRDMDIIQDLIFHRGALLQGFHVLTNKEEVLVYAPTAPHRPGAPLKLACTRYSLRPRDDYQPDDALPPTFIATRYLAESRGKLLMVLRHYTGNPVVRRRTRMFRIFELTFGEPAEPRRAATPCWWVEIPELTGRALFLGRSCSRSVDVAQFPMLQEDTIYFLDDANLDLSMVLNNGSTYCNVDMGMYRKGEKIRPGARQFPREFTADCSPPIWLVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0660700 | RBH | 0.0 | 0.0 | 0.594109 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47130 | RBH | 0.0 | 0.0 | 0.152935 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0660700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024960 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027930 | RBH | 0.0 | 0.0 | 0.463960 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026900 | RBH | 0.0 | 0.0 | 0.842590 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0448700 | RBH | 0.096837 | 0 | 0.1106725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0437700 | RBH | 0.120659 | 0 | 0.1810605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027110 | RBH | 0.0 | 0.0 | 0.0 |
