Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0024340 | OGI:01074640 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:24200861-24203415 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccgctccctctccccctcccgcttcccgccactcgccaccctcccaaaccgcacgaggcctcggcctccgcctccgcctcgctccacgccgcgctcgcctcgctctcccagcagtgcggggcgggaggcggaggcgggggcgccctccgcgacgccttcgccctcgtcgcccgcgccgagcgcgacgcgtgccccgcagcggtggtctcggtcggcccggaggcgtacgcgtccctcctgcagtgctgcgtcgcggcggggtgcctccgcgcggggcggcaggtgcacgccgccgccgtcaagcgcgggccccgctactgccgccacgcctacatcggcaccaagctcgccgtgttctacgcccggtgcggcgcgctcggcgacgccgagcgcgcgttcagcgcgctcccggccaagaacgccttcgcgtgggccgccgtcatcgggatgtggagccgcgccgggctgcacggcaaggccctcgccgggtacgccgccatgctcgaggcgggcgttcccgcggacaacttcgtcgtgcccaacgtgctcaaggcctgcgcggggctcgggctgcttggccccggcagagcggtgcacggttacgcctggaaggcgggggtcgggaactgcgtgtacgtgatgagcagcctggtggacttctatggaaaatgcggcgaggtggatgatgcgcgggaggtgttcgacgtaatgccggagaggacagtggtgagctggaactcgatgctgatggggtatatacacaatgggaggattgatgaggctgctgacttgttctatgagatgagggtcgagggcgtgctgccgacaagggtgagtgttctgagctttctgtccgcatccgcggatcttgaggttcttgatgggggaaggcagggccatgcagttgcagtatcaagcggcctggagatggatttgattctgggcagttcaatgatcaacttttactgtaaggttggtttggtggaggctgcagaggtgatatttgagcagatggttgaaagagatattgtcacctggaatctgatgatttcaggatatttgcaggatgggcaaactgacaaagcccttaccacatgccatagaatgctggagagtggcctgaagtttgattgtgtgacgttagcgtccgttatcatggcttgcgtgaaatcttacagaatggaggtgggtggagctgctcatgcttacgcagtgagaaacaatcttgaatcagataaaacggttttttgtagcctgatagaattgtattcaagtagtgggagaatcgaacaaatgcgcagagtatttgattcaattagacggagagatatagccacgtggaaagcgatgatctgtgcttatgcagaccatggaatgggttctgaggctctgaagcttttatatcaaatgcagcttgaaggcacatctccaactgcagcatgttgggattcagtactttcagcttttattcgaaatggacagttagatgatgccctaagcaccttctatgagatgcttcaaacgagcacacgccccaatctgcggacatggagtctgttaataagcggcttgtctcgaaatggtatgcatcctgaggttatgaatctatgttgcaagatgcaagaagtagagccagcacctagtccaacaatattttctgcagcacttcttgctgttaaatctgcagcttcagtacagtatggaaaagcaatgcacgcatgcattgttaagaagggcctattattgtcgaaatctgtggtgcagtcgctgctaaacatgtatggtagcttcaatgatagaggcacagtagagagtttgctaagatttcttgctgctgcacagtaaataatttcagggcgtcaagaatgtggtgctagtaaaataggacatacaggtttacaggttacagctgtacataaatacatggcgtttgcacatatgaattcacattcataatacaattcctattttgagtgatggagtatggactaaatcagagtggtcatgaaacaaagatacgtcataccagtttgatacgaaataacatctcttacatgattgtattaaccttgcagatacattacagagtatgcatctattgttgggaggcattattcctaaaatcagaaggttctgataaaagaaccaatcaccttaaagggctgaaaccagcgagtaaacagtgtttctgtggccacatgactctctttgagacctacagctagtcagctacaagtggttgaataatttcaagaaaagcataactgttttagtcactgtaacgatgaatatgataacatgctgacagatgtgctgcagttctgttgtcatccaattgttcggttttgaattaggatcgctactctgtgctggccctttttcggatactgtcaaagaacaatgtccagatgttatgggcaacttattatcattatataggtcattacttcttttcacactgcaaacaaaagtgtaactgtatattcctcctgtaaagtgtcaactcattgtacatatctttctgaacaactatacacagcacttttcca
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| CDS seq | atggcgccgctccctctccccctcccgcttcccgccactcgccaccctcccaaaccgcacgaggcctcggcctccgcctccgcctcgctccacgccgcgctcgcctcgctctcccagcagtgcggggcgggaggcggaggcgggggcgccctccgcgacgccttcgccctcgtcgcccgcgccgagcgcgacgcgtgccccgcagcggtggtctcggtcggcccggaggcgtacgcgtccctcctgcagtgctgcgtcgcggcggggtgcctccgcgcggggcggcaggtgcacgccgccgccgtcaagcgcgggccccgctactgccgccacgcctacatcggcaccaagctcgccgtgttctacgcccggtgcggcgcgctcggcgacgccgagcgcgcgttcagcgcgctcccggccaagaacgccttcgcgtgggccgccgtcatcgggatgtggagccgcgccgggctgcacggcaaggccctcgccgggtacgccgccatgctcgaggcgggcgttcccgcggacaacttcgtcgtgcccaacgtgctcaaggcctgcgcggggctcgggctgcttggccccggcagagcggtgcacggttacgcctggaaggcgggggtcgggaactgcgtgtacgtgatgagcagcctggtggacttctatggaaaatgcggcgaggtggatgatgcgcgggaggtgttcgacgtaatgccggagaggacagtggtgagctggaactcgatgctgatggggtatatacacaatgggaggattgatgaggctgctgacttgttctatgagatgagggtcgagggcgtgctgccgacaagggtgagtgttctgagctttctgtccgcatccgcggatcttgaggttcttgatgggggaaggcagggccatgcagttgcagtatcaagcggcctggagatggatttgattctgggcagttcaatgatcaacttttactgtaaggttggtttggtggaggctgcagaggtgatatttgagcagatggttgaaagagatattgtcacctggaatctgatgatttcaggatatttgcaggatgggcaaactgacaaagcccttaccacatgccatagaatgctggagagtggcctgaagtttgattgtgtgacgttagcgtccgttatcatggcttgcgtgaaatcttacagaatggaggtgggtggagctgctcatgcttacgcagtgagaaacaatcttgaatcagataaaacggttttttgtagcctgatagaattgtattcaagtagtgggagaatcgaacaaatgcgcagagtatttgattcaattagacggagagatatagccacgtggaaagcgatgatctgtgcttatgcagaccatggaatgggttctgaggctctgaagcttttatatcaaatgcagcttgaaggcacatctccaactgcagcatgttgggattcagtactttcagcttttattcgaaatggacagttagatgatgccctaagcaccttctatgagatgcttcaaacgagcacacgccccaatctgcggacatggagtctgttaataagcggcttgtctcgaaatggtatgcatcctgaggttatgaatctatgttgcaagatgcaagaagtagagccagcacctagtccaacaatattttctgcagcacttcttgctgttaaatctgcagcttcagtacagtatggaaaagcaatgcacgcatgcattgttaagaagggcctattattgtcgaaatctgtggtgcagtcgctgctaaacatgtatggtagcttcaatgatagaggcacagtagagagtttgctaagatttcttgctgctgcacagtaa
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| Protein seq | MAPLPLPLPLPATRHPPKPHEASASASASLHAALASLSQQCGAGGGGGGALRDAFALVARAERDACPAAVVSVGPEAYASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVLKACAGLGLLGPGRAVHGYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIEQMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFIRNGQLDDALSTFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEVMNLCCKMQEVEPAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMYGSFNDRGTVESLLRFLAAAQ |
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| Function | Pentatricopeptide repeat-containing protein At5g55740, chloroplastic [UniProtKB/Swiss-Prot:Q9FM64] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0024340 | OsKeNa_01g0024340.01 | Chr01 | 24200861 | 24203415 | + | NAM | ||
| CDS seq | atggcgccgctccctctccccctcccgcttcccgccactcgccaccctcccaaaccgcacgaggcctcggcctccgcctccgcctcgctccacgccgcgctcgcctcgctctcccagcagtgcggggcgggaggcggaggcgggggcgccctccgcgacgccttcgccctcgtcgcccgcgccgagcgcgacgcgtgccccgcagcggtggtctcggtcggcccggaggcgtacgcgtccctcctgcagtgctgcgtcgcggcggggtgcctccgcgcggggcggcaggtgcacgccgccgccgtcaagcgcgggccccgctactgccgccacgcctacatcggcaccaagctcgccgtgttctacgcccggtgcggcgcgctcggcgacgccgagcgcgcgttcagcgcgctcccggccaagaacgccttcgcgtgggccgccgtcatcgggatgtggagccgcgccgggctgcacggcaaggccctcgccgggtacgccgccatgctcgaggcgggcgttcccgcggacaacttcgtcgtgcccaacgtgctcaaggcctgcgcggggctcgggctgcttggccccggcagagcggtgcacggttacgcctggaaggcgggggtcgggaactgcgtgtacgtgatgagcagcctggtggacttctatggaaaatgcggcgaggtggatgatgcgcgggaggtgttcgacgtaatgccggagaggacagtggtgagctggaactcgatgctgatggggtatatacacaatgggaggattgatgaggctgctgacttgttctatgagatgagggtcgagggcgtgctgccgacaagggtgagtgttctgagctttctgtccgcatccgcggatcttgaggttcttgatgggggaaggcagggccatgcagttgcagtatcaagcggcctggagatggatttgattctgggcagttcaatgatcaacttttactgtaaggttggtttggtggaggctgcagaggtgatatttgagcagatggttgaaagagatattgtcacctggaatctgatgatttcaggatatttgcaggatgggcaaactgacaaagcccttaccacatgccatagaatgctggagagtggcctgaagtttgattgtgtgacgttagcgtccgttatcatggcttgcgtgaaatcttacagaatggaggtgggtggagctgctcatgcttacgcagtgagaaacaatcttgaatcagataaaacggttttttgtagcctgatagaattgtattcaagtagtgggagaatcgaacaaatgcgcagagtatttgattcaattagacggagagatatagccacgtggaaagcgatgatctgtgcttatgcagaccatggaatgggttctgaggctctgaagcttttatatcaaatgcagcttgaaggcacatctccaactgcagcatgttgggattcagtactttcagcttttattcgaaatggacagttagatgatgccctaagcaccttctatgagatgcttcaaacgagcacacgccccaatctgcggacatggagtctgttaataagcggcttgtctcgaaatggtatgcatcctgaggttatgaatctatgttgcaagatgcaagaagtagagccagcacctagtccaacaatattttctgcagcacttcttgctgttaaatctgcagcttcagtacagtatggaaaagcaatgcacgcatgcattgttaagaagggcctattattgtcgaaatctgtggtgcagtcgctgctaaacatgtatggtagcttcaatgatagaggcacagtagagagtttgctaagatttcttgctgctgcacagtaa
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| Protein seq | MAPLPLPLPLPATRHPPKPHEASASASASLHAALASLSQQCGAGGGGGGALRDAFALVARAERDACPAAVVSVGPEAYASLLQCCVAAGCLRAGRQVHAAAVKRGPRYCRHAYIGTKLAVFYARCGALGDAERAFSALPAKNAFAWAAVIGMWSRAGLHGKALAGYAAMLEAGVPADNFVVPNVLKACAGLGLLGPGRAVHGYAWKAGVGNCVYVMSSLVDFYGKCGEVDDAREVFDVMPERTVVSWNSMLMGYIHNGRIDEAADLFYEMRVEGVLPTRVSVLSFLSASADLEVLDGGRQGHAVAVSSGLEMDLILGSSMINFYCKVGLVEAAEVIFEQMVERDIVTWNLMISGYLQDGQTDKALTTCHRMLESGLKFDCVTLASVIMACVKSYRMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSSGRIEQMRRVFDSIRRRDIATWKAMICAYADHGMGSEALKLLYQMQLEGTSPTAACWDSVLSAFIRNGQLDDALSTFYEMLQTSTRPNLRTWSLLISGLSRNGMHPEVMNLCCKMQEVEPAPSPTIFSAALLAVKSAASVQYGKAMHACIVKKGLLLSKSVVQSLLNMYGSFNDRGTVESLLRFLAAAQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.447525 | 0.0 | 0.458130 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0607800 | RBH | 5.074533 | 3.054534 | 0.072576 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g42280 | RBH | 1.549583 | 0.988422 | 0.180360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0607800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024750 | RBH | 0.445603 | 1.025854 | 0.247931 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024670 | RBH | 0.323920 | 0.0 | 0.453508 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024040 | RBH | 0.276429 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023760 | RBH | 4.502853 | 1.351510 | 1.981293 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0402900 | RBH | 5.2023055 | 1.259341 | 0.085398 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023430 | RBH | 0.389394 | 0.0 | 0.048180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0391300 | RBH | 6.7607685 | 1.1066545 | 0.846035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023700 | RBH | 0.305240 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023690 | RBH | 0.423488 | 1.175504 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023940 | RBH | 2.766026 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023960 | RBH | 0.684099 | 0.0 | 0.086127 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023830 | RBH | 0.649220 | 0.544125 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024060 | RBH | 0.306255 | 0.0 | 0.485516 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023790 | RBH | 1.252535 | 1.560722 | 1.227388 |
