Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0023970 | OGI:01073800 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:23965287-23970627 | ||||||||
| Gene Symbol | RLCK42, OsRLCK42 | ||||||||||
| DNA seq | aggtggtagcgaatagcagcaatggaggtttaattagcggcagcggagctcgccttggtctcgctttaatggccacctcctcctcctcttcccacgccaacgcctccgctcccgctcgtaccacgcgctgagcgagcgctagggcttgcctgcctcgcctcggttggtggcgcgcgcgccgctcggcgaggagggagcgccgcctgccgcggcgtcgactgcggtgagctgctgttcggtgtcaacggcgtcggcgagggggctcgtcgcgttcactggtgggtctctcccctccccacttcgcggcgtcggctccggtgtgcgttttcgttttgggggaagcttcggttcggatgcgagcgcggcggcccggaatcgggagcgcaggatgggaatttccactgtattttagtagttgctattcctgtgcatggagaggaaaaatgcgggtcaaatctctggttgggggatcgcatatggggttgggtggggaatttgattgattgattgattgatttatatctctcgatgaattgactccgtttctgtcccactcgcggctggctggccaatttcgaggcggggagcgcggcgagatctgcgagcaaaaatttcgaataatttggggggattcctgcggcggtgctgggaaatcgtgcagggccgtggtggagtggaggaggacgaggcgggcatggcagggcagggcactgtgcagtctgacccatactaacgccagggtcaccaccaccaccactcacctcgtcgcctcggctggcgaagcgcgggcgagctatccccggctacagtggcggcgaggacgagtggcgcccgctccccctctgcggcagccataaaggttgggatctttctctcaatccgcagctcgggagttgggacccatcgatcagtggcgaggagcaggaggaggaggaggaaaagtaagcgcggtgtggcgcgcatcgtcctactgatgaaatctgaaaatcttttactggtctctttggcttttgccttttcgttctgggaacaggttcgttgtcgagctctggtggtggtggtggcaactgtcagtagcttggtactatgcccctcctatccccattggcaatgcattaaaagagctcgggggtggtggttgtgttgcttgcttgtactcctataggtgttactacaagtttgtcctggctggttcttgccttcttgggttttgcttgatgcttgcttagagagagttggtgtgctgtgtggattttgtaggcctgttttggtggagtggtggagggacgacagggtatgatggtgagctctactcagcagcagcagctgcagctgcagaggaaggggaaggctgtggcggagaagggcggcgctgcgggggcggcggcggcggagaaggtggtggtggcggtgcgggcggccaccagggagatctcgaagacggcccttatgtgggcgttgacgcacgtcgtgcagcccggcggcagtatcttgcttctcgtcgtcgtcccgtcacatagctctggtattgtttcgttctcttgtgtttcctgcattgtgcagtttgtactctttttttttttggatttgtgttttgcacttggaatattgaatgcctttgcatgctgcttgcacagctaaatgcatatgtggattttcgtcattgatacctaagctcttttcttaccgtggttactgaacttccctgcctccctggtttcttcagtcatggcttaagtgccctcaaatatcattatctcttacctgtatttcaggcaggaagttctggggctttccactctttgctggtgattgcgcaagtggcaacaagactatgttggatcagaaggatatttctgagctgtcttctcaaatgatggacaaacttaagaatgtttacgatccaaacaaggtttgaagctcagaattttttcttctgcagatgcttacttgaactctttaacacgtagttgcatgtctcatcttatgccatttgtgtagataaatgtgaagactaaggttgtgtctgggtcacctcctggtgttgtagctgctgagtctaagcgagcacaagcaagctgggttgtgatagacaagtaagggtcaaatcctattacagtgtgcataaatacatcataaccttttttttttctgttttcttatgtttcatgtttctgctaattagggagttgaagcatgaagagaaacattgcgtggaggagctacagtgtaatattgttgttatgaagcgttctcaacctaaagttgttcggttgaatcttgtgggatctcctgataaagattccaaagtatcctgttcacttccacctatgttggatagttctgttggtaaaacaacaactgatgtaaaagagccacggacgtcaattcgaggaccggctgtaacaccaaatagcagccctgacttggagacaacttttgaaagtactgaagctggaacatcctctgtctcaagttcagatccagggacttctccatatagtgcttctgacacaaatggttctatgaagaaagaggcaccagcaacaaaggatagggtgcagcatttggacatcaatatttctgattctgacagcgaaacattgagtcctccagcatccttctcgcttcaaccatggatggttgacattctacagggatcagcatcgtcgagaacacatggaaaaggtccacgaaaagctcgcactgccacagcagatgctttgctggagaatatatccaagctggatctcttgaatgaaattagttctatgagaagccggtcagatctaaacttccgaggaaatgttagggatgctgtctcgttggcaaggagtgcaccccctggaccacctccattgtgttcaatatgtcagcacaaggcacctgtttttggaaaacctccccgatggtttacttatgctgaattggaacttgcaactggtggtttctctcaagccaatttcctggctgaaggtggatttggatctgttcatcgaggtgtccttcatgatggtcaagcaattgctgttaagcaacacaaacttgctagttctcagggcgatgtggagttctgttcagaggtggaagtattgagttgtgcgcaacaccgaaatgttgtaatgctgattggtctttgtgttgaggataggaggcgtttgctggtctatgagtacatctgcaatggatccttggattcacatctttatggtaagatcattttctttcttgcatttatcagtaaaaaaaggcaattcgtgataaatcacttgtctgtaaacttggtaatccagttgacagtttacctacgtggtagtagattagttctgtagtcttgactcttgacagttgttcaaggtactatgtcttgcaccaacaatggagtgaaagttagtaattttactgtaaactaatgtatgttaagatatcattgaataaatttcaggtcgtaataaagagacattgcaatggtctgctagacaaaagattgcagttggggctgctcgagggctgcggtatttgcatgaagaatgcagagttggttgtataatccatcgtgacatgagaccaaacaacatccttgttacacatgattatgagccactggtatggtgtgctctccctttgcctattttagagtaatataagtttttcaatctgtttgggacgttatatattgtttctgatatcatttgttctttttatatccattgcaatgatgaagcctaacatttatagttcattctgtatggtggtgcctatatttgccacactatacttgtcaggaagataatagggtattaaccagcacaaattagattgaattgtaaccattgttctctggacttcctcatattatatcagtaaaacctaatgtctgttgaactcgattgtataggcatcttgtattcttgttaacttcacaatcctaagataaggttgtaagtctttcaataatgttctgacaggttggagattttgggttggcacgatggcaacctgatggtgacatgggtgttgacacgagagtaattggaacattcgggtaaatattgagatttgcaactgtgtgttgtaaccatgtgcagttttgggcacttattaacgaggctctgcttggctgtctgcagttatctggcaccagaatacgcacagagtggacaaataacagagaaagctgatgtatactcttttggggttgtgttagttgaacttgtcactgggcgcaaggctgttgacatcaaccgacccaagggccagcaatttttgactgaatgggttagttctttcaattccttttttattatacttttcatatgctcaacaattctatgattttaaatgaagtgatctgggtaatcccatcagtgcactttatgttagttcatgttgcaatttattagacattgtagacagataaaacttctgatctaaactgcactgctatgtcaaaatgatgctttactcccttttgtgctctgtaacctgaactcataaaagatttggattatgacaggcacgccctttcttggaggagtatgcaattgatgagctcatagatccacgcttgggtgaccgctattgtgaaaatgaggtctattgcatgttgcatgcagcaaaactttgcatacgacgtgatcctcattcaaggccccgcatgtctcatgttagttttttccagttctatctgcaattattttgttcttagacattagtacactggatcttctaaatgcttttcctttattttatcttttgtttaggttctacgcatactagagggcgacatggttgtcgattctggctctgtttcagccccaagtagtgattctgggagcaggagctggcgaatgctgaatgaacaacagaactgtagagactggagcccagctcgacaagattcacatcgagtggtcgaaggaaaaaactcctacgacgctcttagggctgcctgggacaggaataagcagagcgtctcacacagatattaaagctccttttcgaaaatcctgcgaagttgagctattcgaccatgtataattccctcacccattcttcctgtcctctttttgttttttttaccccctgccttctagtaattctaggatcaaagcttttccctgccatgtttccctggtgtatagtagaagtgctaataggtttacaagtatattgagctctcagttagcttccgttttgtgtatgatcggaggaaatgtgatcccagatcaaatagttatgcgtagaatttcagtaacttgattataatataccttcaaggcaagatctctgtaaagatatcactctcatttgcttcaagaggcgaagttttgcttgcctg
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| CDS seq | atgatggtgagctctactcagcagcagcagctgcagctgcagaggaaggggaaggctgtggcggagaagggcggcgctgcgggggcggcggcggcggagaaggtggtggtggcggtgcgggcggccaccagggagatctcgaagacggcccttatgtgggcgttgacgcacgtcgtgcagcccggcggcagtatcttgcttctcgtcgtcgtcccgtcacatagctctgctgctgagtctaagcgagcacaagcaagctgggttgtgatagacaaggagttgaagcatgaagagaaacattgcgtggaggagctacagtgtaatattgttgttatgaagcgttctcaacctaaagttgttcggttgaatcttgtgggatctcctgataaagattccaaagtatcctgttcacttccacctatgttggatagttctgttggtaaaacaacaactgatgtaaaagagccacggacgtcaattcgaggaccggctgtaacaccaaatagcagccctgacttggagacaacttttgaaagtactgaagctggaacatcctctgtctcaagttcagatccagggacttctccatatagtgcttctgacacaaatggttctatgaagaaagaggcaccagcaacaaaggatagggtgcagcatttggacatcaatatttctgattctgacagcgaaacattgagtcctccagcatccttctcgcttcaaccatggatggttgacattctacagggatcagcatcgtcgagaacacatggaaaaggtccacgaaaagctcgcactgccacagcagatgctttgctggagaatatatccaagctggatctcttgaatgaaattagttctatgagaagccggtcagatctaaacttccgaggaaatgttagggatgctgtctcgttggcaaggagtgcaccccctggaccacctccattgtgttcaatatgtcagcacaaggcacctgtttttggaaaacctccccgatggtttacttatgctgaattggaacttgcaactggtggtttctctcaagccaatttcctggctgaaggtggatttggatctgttcatcgaggtgtccttcatgatggtcaagcaattgctgttaagcaacacaaacttgctagttctcagggcgatgtggagttctgttcagaggtggaagtattgagttgtgcgcaacaccgaaatgttgtaatgctgattggtctttgtgttgaggataggaggcgtttgctggtctatgagtacatctgcaatggatccttggattcacatctttatggtcgtaataaagagacattgcaatggtctgctagacaaaagattgcagttggggctgctcgagggctgcggtatttgcatgaagaatgcagagttggttgtataatccatcgtgacatgagaccaaacaacatccttgttacacatgattatgagccactggttggagattttgggttggcacgatggcaacctgatggtgacatgggtgttgacacgagagtaattggaacattcggttatctggcaccagaatacgcacagagtggacaaataacagagaaagctgatgtatactcttttggggttgtgttagttgaacttgtcactgggcgcaaggctgttgacatcaaccgacccaagggccagcaatttttgactgaatgggcacgccctttcttggaggagtatgcaattgatgagctcatagatccacgcttgggtgaccgctattgtgaaaatgaggtctattgcatgttgcatgcagcaaaactttgcatacgacgtgatcctcattcaaggccccgcatgtctcatgttctacgcatactagagggcgacatggttgtcgattctggctctgtttcagccccaagtagtgattctgggagcaggagctggcgaatgctgaatgaacaacagaactgtagagactggagcccagctcgacaagattcacatcgagtggtcgaaggaaaaaactcctacgacgctcttagggctgcctgggacaggaataagcagagcgtctcacacagatattaa
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| Protein seq | MMVSSTQQQQLQLQRKGKAVAEKGGAAGAAAAEKVVVAVRAATREISKTALMWALTHVVQPGGSILLLVVVPSHSSAAESKRAQASWVVIDKELKHEEKHCVEELQCNIVVMKRSQPKVVRLNLVGSPDKDSKVSCSLPPMLDSSVGKTTTDVKEPRTSIRGPAVTPNSSPDLETTFESTEAGTSSVSSSDPGTSPYSASDTNGSMKKEAPATKDRVQHLDINISDSDSETLSPPASFSLQPWMVDILQGSASSRTHGKGPRKARTATADALLENISKLDLLNEISSMRSRSDLNFRGNVRDAVSLARSAPPGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSQANFLAEGGFGSVHRGVLHDGQAIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGLCVEDRRRLLVYEYICNGSLDSHLYGRNKETLQWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILVTHDYEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQFLTEWARPFLEEYAIDELIDPRLGDRYCENEVYCMLHAAKLCIRRDPHSRPRMSHVLRILEGDMVVDSGSVSAPSSDSGSRSWRMLNEQQNCRDWSPARQDSHRVVEGKNSYDALRAAWDRNKQSVSHRY |
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| Function | Inactive protein kinase SELMODRAFT_444075 [UniProtKB/Swiss-Prot:P0DH62] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0023970 | OsKeNa_01g0023970.01 | Chr01 | 23965311 | 23970627 | + | NAM | ||
| CDS seq | atgatggtgagctctactcagcagcagcagctgcagctgcagaggaaggggaaggctgtggcggagaagggcggcgctgcgggggcggcggcggcggagaaggtggtggtggcggtgcgggcggccaccagggagatctcgaagacggcccttatgtgggcgttgacgcacgtcgtgcagcccggcggcagtatcttgcttctcgtcgtcgtcccgtcacatagctctgctgctgagtctaagcgagcacaagcaagctgggttgtgatagacaaggagttgaagcatgaagagaaacattgcgtggaggagctacagtgtaatattgttgttatgaagcgttctcaacctaaagttgttcggttgaatcttgtgggatctcctgataaagattccaaagtatcctgttcacttccacctatgttggatagttctgttggtaaaacaacaactgatgtaaaagagccacggacgtcaattcgaggaccggctgtaacaccaaatagcagccctgacttggagacaacttttgaaagtactgaagctggaacatcctctgtctcaagttcagatccagggacttctccatatagtgcttctgacacaaatggttctatgaagaaagaggcaccagcaacaaaggatagggtgcagcatttggacatcaatatttctgattctgacagcgaaacattgagtcctccagcatccttctcgcttcaaccatggatggttgacattctacagggatcagcatcgtcgagaacacatggaaaaggtccacgaaaagctcgcactgccacagcagatgctttgctggagaatatatccaagctggatctcttgaatgaaattagttctatgagaagccggtcagatctaaacttccgaggaaatgttagggatgctgtctcgttggcaaggagtgcaccccctggaccacctccattgtgttcaatatgtcagcacaaggcacctgtttttggaaaacctccccgatggtttacttatgctgaattggaacttgcaactggtggtttctctcaagccaatttcctggctgaaggtggatttggatctgttcatcgaggtgtccttcatgatggtcaagcaattgctgttaagcaacacaaacttgctagttctcagggcgatgtggagttctgttcagaggtggaagtattgagttgtgcgcaacaccgaaatgttgtaatgctgattggtctttgtgttgaggataggaggcgtttgctggtctatgagtacatctgcaatggatccttggattcacatctttatggtcgtaataaagagacattgcaatggtctgctagacaaaagattgcagttggggctgctcgagggctgcggtatttgcatgaagaatgcagagttggttgtataatccatcgtgacatgagaccaaacaacatccttgttacacatgattatgagccactggttggagattttgggttggcacgatggcaacctgatggtgacatgggtgttgacacgagagtaattggaacattcggttatctggcaccagaatacgcacagagtggacaaataacagagaaagctgatgtatactcttttggggttgtgttagttgaacttgtcactgggcgcaaggctgttgacatcaaccgacccaagggccagcaatttttgactgaatgggcacgccctttcttggaggagtatgcaattgatgagctcatagatccacgcttgggtgaccgctattgtgaaaatgaggtctattgcatgttgcatgcagcaaaactttgcatacgacgtgatcctcattcaaggccccgcatgtctcatgttctacgcatactagagggcgacatggttgtcgattctggctctgtttcagccccaagtagtgattctgggagcaggagctggcgaatgctgaatgaacaacagaactgtagagactggagcccagctcgacaagattcacatcgagtggtcgaaggaaaaaactcctacgacgctcttagggctgcctgggacaggaataagcagagcgtctcacacagatattaa
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| Protein seq | MMVSSTQQQQLQLQRKGKAVAEKGGAAGAAAAEKVVVAVRAATREISKTALMWALTHVVQPGGSILLLVVVPSHSSAAESKRAQASWVVIDKELKHEEKHCVEELQCNIVVMKRSQPKVVRLNLVGSPDKDSKVSCSLPPMLDSSVGKTTTDVKEPRTSIRGPAVTPNSSPDLETTFESTEAGTSSVSSSDPGTSPYSASDTNGSMKKEAPATKDRVQHLDINISDSDSETLSPPASFSLQPWMVDILQGSASSRTHGKGPRKARTATADALLENISKLDLLNEISSMRSRSDLNFRGNVRDAVSLARSAPPGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSQANFLAEGGFGSVHRGVLHDGQAIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGLCVEDRRRLLVYEYICNGSLDSHLYGRNKETLQWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILVTHDYEPLVGDFGLARWQPDGDMGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQFLTEWARPFLEEYAIDELIDPRLGDRYCENEVYCMLHAAKLCIRRDPHSRPRMSHVLRILEGDMVVDSGSVSAPSSDSGSRSWRMLNEQQNCRDWSPARQDSHRVVEGKNSYDALRAAWDRNKQSVSHRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0023970 | OsKeNa_01g0023970.02 | Chr01 | 23965287 | 23970579 | + | IsoSeq | ||
| CDS seq | atgttagggatgctgtctcgttggcaaggagtgcaccccctggaccacctccattgtgttcaatatgtcagcacaaggcacctgtttttggaaaacctccccgatggtttacttatgctgaattggaacttgcaactggtggtttctctcaagccaatttcctggctgaaggtggatttggatctgttcatcgaggtgtccttcatgatggtcaagcaattgctgttaagcaacacaaacttgctagttctcagggcgatgtggagttctgttcagaggtggaag
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| Protein seq | MLGMLSRWQGVHPLDHLHCVQYVSTRHLFLENLPDGLLMLNWNLQLVVSLKPISWLKVDLDLFIEVSFMMVKQLLLSNTNLLVLRAMWSSVQRWK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.133878 | 3.930688 | 3.952939 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0602800 | RBH | 0.970164 | 0.929795 | 5.097006 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41870 | RBH | 0.649499 | 0.619096 | 1.298917 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0602800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024390 | RBH | 0.061950 | 16.807457 | 8.365860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028780 | RBH | 0.089836 | 1.313605 | 0.324757 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024280 | RBH | 0.180504 | 16.869591 | 7.664639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023640 | RBH | 0.029251 | 0.424637 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023400 | RBH | 5.142484 | 27.628759 | 14.983619 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0396700 | RBH | 12.3044595 | 8.7639745 | 4.8420335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023320 | RBH | 0.162130 | 0.928520 | 1.216547 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0385700 | RBH | 11.047028 | 3.2143795 | 27.7099805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023340 | RBH | 0.249216 | 0.133377 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023300 | RBH | 0.540414 | 14.426437 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023550 | RBH | 1.855489 | 17.462824 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023560 | RBH | 0.865222 | 1.030290 | 1.790548 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023470 | RBH | 0.240275 | 8.078785 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023670 | RBH | 0.169925 | 8.628518 | 4.739890 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023380 | RBH | 0.188340 | 11.947075 | 5.266426 |
