Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0019300 | OGI:01059530 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:18727022-18732047 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaacggcagagggtgagctgcgccatgggtcgtgaatcaccgttgttatcgcctccaacttgtcgctggagccacgcgcccagcagctagagccaagatgaattcctgagagagtatatatatatcgacatgcaagacgtgccttgtacgtgcacgctcactagtaaacataaaaatcaagtttgtcctcgcacgttatcgcggggaccagaaagcaatgttacaaaaactgcatgaacttgagatgacaatgatcccccaaaacaacaaacaaagtaaaacaaacaaatatagctagtaatgtaaatacctgcatatcagagaagataaatctttagtatgacaatttgcaagtttagtaaaatttatatctcattgaccttgagaagtccaactggaccgatgaaccaagcgcttggccggttcggtgttcggtctggcttttcttcctgccagtaatcgtgcacgtgcaatgcacgtaaaaatcaatatatgaattaaattggacaaattgcttaaattaaacttgccaaactgcaagggagaacatttttattattttaaaaaccatgatgatggtagtacaattagatttcatacgtagactgttgtaagcaaaaattttccaaataaatctaaattcttggattcattatggcacacaattttgttcttcttagtacaattctgatgtacatcaaatgctcaatatttttgtttgagagtactacaactaaatacacatgcaccactatatccttcgatcaagaacatgtacaatagagattacttgacaatttcccgtaaataaggacttcactggtcagaaactgattgaaagatgaagaataaacataacatagcataattaaataacatagtataattaaattgaagtataattgtgtcttatgttttctgaattacctattcttgatgtggatacccaatctacctgggctggggagcacatggagaagcagacaattgtgccggctcacgtctgcacggagcccagcattgaggccagggcttgggcgtctgtaaatgttggcatagataaacaaaaaatcatgaggcaataaagaatcccatatgctgtatttggtgatttctatgtaagaggtgtaaataattgatctacacaaataattgatctagaatagaataattgttataaatacatataaacaaaaactaagaagataaaaactgctccaccttctgtagcaaaacaaagaagtgatacatatattctgtagcacgatatcctaaaggaaaaggttctcaatttagacgatatcctaaagatatcctaaaggaaaaggttctcaatttagacgatatcctaaaggaaaaggttctcaatttagcttgtgagccccatctttttacaggcaccatctccacacacaaagtttgcaccaatcagttggcatctccctaattctcataatcaatgttttatttaatagaaatttcatcttagtttttcttatcaacatatatggagagttcagtactgaagtataccgaattgagattaatactattttttaagatgatggtgcttgatagcgatagccgtgctcatctatgatgttcaaggccatcaacaaatcaagatttaagaagatcataatattcttaatcttaacaagttaatggcagaataagagagcaaaatttccaaggacataaagatatttcacatccaaatagaatctgtattaataaataatgcacatatcatattccttcttgcattgccatgaaaaaagagtaaataaaaactgatttttgcactcaagtaagatagggaaaaaattggcagttggtagttaatacctgatcaatcttcttttgtgaaactaatttgaattacgaagctctttatgcatggagcaaatcagcaatcaaacattgcactatacccatcacaaaacaaaaaaacatgatcatacatggcaacttcataaagaaatatagatttcagtaaaagaacatgactcaaatttggccctaaaatgtttattatttgaggatctaggaaaggaaaggaggacatcaccttaatctatagtctgttcaggtgctcgttgattagataagtggctatggctcactcctcgcaccactacatatagtaccctaggccgccagatgcttagtctgtgagtgctacgcaggagcaagcaaacaataccacaatccgctcatcagcttgcccattcgcccatattcgttgttgctttgtgtttcccactacttgtacagctaaaaaatattgtcacgatcaggtaaaagctataaaggaaggtcaaattgagaagttttggaaaatatattgctagtattgttccagacaaactccttctatagatgaccaatatttgatctaaatttaacataaaacttggttttaaatccagctactatcgagcatcagcttaatcataacgtatactgaagcatgctatcatgcctaaatatgatcatttttttcaaatagcatataatgtgaattataacgtgatctagagatgacaccagaacttttgcaagtgtatataaatcttctacctcccagcacacatacagccaacatgctaaacttaagttgatccaaaaattacctagtagtactgtaatccaatcctcaaaatatgctttgtcttaaaatatttgatgaccaatatttgacaacctgcatacatacagccaacatacttacattgtttcagacaacatgcttttataaatgaccaatatttgatgtaaatttaacatagcgcttggttttaaaatacaagctatcaagaatcaggttaatcatatcgtactaaagcatgcaaaatcataactaaatctagccttttcctcaaacttccctccctcagatgaaaggtgtctgatcattggctgaactttaaggcttcaaaacaaaccagaatgtaaaagcatccctccttccatgcttcatctgtatattcttagcttgaaaaaaatatgcttagtgagttcacaaaagggacaccactatactcaagcaataattttatgagaacatattgagatgccatatccagcaggtgaaattttgatactaaataagcacaagttctaggcgagctcttacatcttgagctcgcagcatgcaacaaaaattgagccagttgtacttctttgcatgttccgaaaaataactccatatttgagatgttatgaatctattgaacgaactgcaaacaaactccataaatggcacttctcagtaaagacaagtgtttgtgataaacataaatggtactttgtgttgccattgaaaaatatgtcaaactgctggttatgcattgtcttcttgatattaccagtccataccagcataaaaacactgatagagaaggttaaagtccaagtaatctgttgttgtagaaatggactgcttcagctacaaaaatatattctcttcattttttttaaaaaaaaagctgtacagtatagaatgaacacccatcagttataagttattaactagtaactgaccacaaattcttttcactgacaagaaacttattagaaaaaataattgaagttccaatagagagtaatactattttttcttcttcaagctctacaccgagccaaatttgttgacctacttgaccttactataatctactgcttgctgagctacgtctttaaatcctggattcaagtaattgatggaaattcaactctgtagttttggaaattaacagaattttgcagttggaaattttcaagcagcaatccaattaaactctcgttcaaaaacctgaagcataaatgctagcaatctttttgctggtagataggagcttgaggaaaagattaccctctagcaagctagctacaagatggaaattctctgatgtagagtagttttgagattgcctatggttggcgtgctaaatgccagtacaagtgcaaaaaccatcttgcctaagatatgattattaaacacttgtgctaatgtgggtaaatgaaatatgattgtgcatacaaaatgaatatgccaaaaggtgtagattttgtttcaagtagcgacgaatttggctgtgtctccatgagcagaggccggagatgtaatccttttccattatcttaaaaaaaaagtagcaacgaatttttcaacgttttcatcgttgctctgtgcctctgttcattttcctacgtgatcagcgtagcgttgctctgctcattttctattcccttttctatgtgatcagcaccttgtgaggaaacagaagattgtcctcattttaaagtaaaccgcacaagtttcagttccagtttttattctgaacataaacatgatgcaaatatgattacatcgtgatatgatcaaccaagattattgcatattagttctcaattcgcgagtacatcattaagatcgttgcaacaacttaacgaacatgagcagttgggcaggcagtctgatactgtagagtagcattcgccattatgtcttgatcgtgtgttgaagcagaagtaccctgcataatgcccggcaaattgttttatgcaggctatctcaccattgtccatgacttcatagtttcctccctttctgatctcgttatcagtgtaatcgatactcttacctgatgatgaaaacaaacacttgtatatatattatctcgatcaacaaaaaaaaataaaaaaaagagtatacacaatgcataggtgtatggggaaatgttttagaagtacgaacaatgcatgtatgtatatggatatgtttcatctgttgcgaatactcaagatcgattaaattgcatgaatggaaacaaacactatatttccctttgaaaatgaacgtcaagtagctagtgacttaccttcatgtccaggaattgcaaaacaacccagaagaaccaagaacaccaccaagagtcctttggtactgtgctttgtctgctcaaccattttcttaatcagtgtcaagccgtggttatgtatcccttctgcattctccat
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| CDS seq | atggagaatgcagaagggatacataaccacggcttgacactgattaagaaaatggttgagcagacaaagcacagtaccaaaggactcttggtggtgttcttggttcttctgggttgttttgcaattcctggacatgaaggtaagagtatcgattacactgataacgagatcagaaagggaggaaactatgaagtcatggacaatggtgagatagcctgcataaaacaatttgccgggcattatgcaggacgcccaagccctggcctcaatgctgggctccgtgcagacgaagaaaagccagaccgaacaccgaaccggccaagcgcttggttcatcggtccagttggacttctcaagctgctgggcgcgtggctccagcgacaagttggaggcgataacaacggtgattcacgacccatggcgcagctcaccctctgccgttga
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| Protein seq | MENAEGIHNHGLTLIKKMVEQTKHSTKGLLVVFLVLLGCFAIPGHEGKSIDYTDNEIRKGGNYEVMDNGEIACIKQFAGHYAGRPSPGLNAGLRADEEKPDRTPNRPSAWFIGPVGLLKLLGAWLQRQVGGDNNGDSRPMAQLTLCR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0019300 | OsKeNa_01g0019300.01 | Chr01 | 18727022 | 18732047 | - | NAM | ||
| CDS seq | atggagaatgcagaagggatacataaccacggcttgacactgattaagaaaatggttgagcagacaaagcacagtaccaaaggactcttggtggtgttcttggttcttctgggttgttttgcaattcctggacatgaaggtaagagtatcgattacactgataacgagatcagaaagggaggaaactatgaagtcatggacaatggtgagatagcctgcataaaacaatttgccgggcattatgcaggacgcccaagccctggcctcaatgctgggctccgtgcagacgaagaaaagccagaccgaacaccgaaccggccaagcgcttggttcatcggtccagttggacttctcaagctgctgggcgcgtggctccagcgacaagttggaggcgataacaacggtgattcacgacccatggcgcagctcaccctctgccgttga
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| Protein seq | MENAEGIHNHGLTLIKKMVEQTKHSTKGLLVVFLVLLGCFAIPGHEGKSIDYTDNEIRKGGNYEVMDNGEIACIKQFAGHYAGRPSPGLNAGLRADEEKPDRTPNRPSAWFIGPVGLLKLLGAWLQRQVGGDNNGDSRPMAQLTLCR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0019300 | OsKeNa_01g0019300.02 | Chr01 | 18727650 | 18728237 | - | IsoSeq | ||
| CDS seq | atgctatgttatgtttattcttcatctttcaatcagtttctgaccagtgaagtccttatttacgggaaattgtcaagtaatctctattgtacatgt |
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| Protein seq | MLCYVYSSSFNQFLTSEVLIYGKLSSNLYCTC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.681681 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0317000 | RBH | 0.0705915 | 0.0154155 | 0.012443 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0315900 | RBH | 0.107303 | 0.0332885 | 0.425742 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0018970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019150 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018810 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
