Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0017190 | OGI:01048430 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:15597246-15599135 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagctataagctgcagatatccattccagttgatcttcttcatgagattctgccaatggacccagctcttcatcaaacgataacttagatgatgagtggtaaccttcatccttcatgtgtttagctagccttctcagctgtgcatttatattttctgcttcaggatgctgctgttcgccaactacaaacacatgaactcggctgttaagctcaacccagctacatccaggatctttgttaactcctcgaagtctcatcaaatgcctcaccctttcaacatcattccattttctctgggaagcatagatgtttgacagcaatatatatgctgaggaatctccggtacctaactccatcaaccgttcaccagcatatgctccgacatcaaaatctcgcaaagagcgacatgctcctagtactatacgccacaaacatgttccgtggtcaatagtaatggactctatgaaatcctttgcttccttaagcatccctgctcggctaagaatatcaaccatgcaagcatagtgatccagcctaggagttaaaccataatcttttgtcattaaactaaaatattcccatcctctgtcaactagacccatatgactgcaagcacacaatatattaatgaatgttatattatcaggtatagtgccctccatcttcatttcttcaaaaagatccagtgcaccattgccacacccattttgtgaaaaaccagaaatgattgagttccatgcaataacatccctatcaggaatccttctgaagacagacatgccatcttcaaggttcccacactttgaatacatcgtagacaaggcacttccaacaggggcccccaaacctaacccatatttcacgatttgcgtgtgcaattgtttccctggttccagtgctgcaatgccagcacatgctctcagaccactagctatagtcgatttactggggatgataccttccttgtccatcctggcatacaatgtcagggcttcctcgtgctccccattctgcacatgcccagaaaccatcgctgtccaaaggacaatgtcaacctcgtacaactgatcaaacccttcttttgcgtcagcaatacaaccacattttgcatacatgtccaccagtgcactcttcacatatatctgaacctcaaacccaagcttcaccatcaaaccgtgggcttgcttccctactgccaatgctcccaaatcactacttgcattgagaaccccaacaaaagtgaactctgttggtgtgaacccagcagcatgcatctgtgagaacatactaactgcactgtctgcctcaccattttgtgcatacccagtaatcatcgccgaccaagtgatcgaattcctctccctcgatgactcaaacacatgaaacgcagcacccatacacccagccttcgcatacatcgtgacaagcgagttttccacagatacaaaatccagcaacccatccttcacaatcagtccatgcatctgctcccccatcagcaaacccaatggcacactaactgcgctgagaactgctgtggcaacaaactcgcttttctcagaagggcactcttcgagcattagtcggaagagatcgaatgcctcctcggagcatttctctgcagcataacctgccaccatggtggaccaggaaaatgagttgcgctgaggcattccgtcgaacactctgcgagcatcagaaacaatgcccagcttacagtacatgttgagcaggctggtgcacacgtacacattggatacggcagaggggatcttgcaagcgagagcgtgggccgcggtgccggcgggcgcggaggccgcacgggcggcggcggtgaaggcggcagcgaaggaatggggcgacggaaggacggtggaggaggagagcat
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| CDS seq | atgctctcctcctccaccgtccttccgtcgccccattccttcgctgccgccttcaccgccgccgcccgtgcggcctccgcgcccgccggcaccgcggcccacgctctcgcttgcaagatcccctctgccgtatccaatgtgtacgtgtgcaccagcctgctcaacatgtactgtaagctgggcattgtttctgatgctcgcagagtgttcgacggaatgcctcagcgcaactcattttcctggtccaccatggtggcaggttatgctgcagagaaatgctccgaggaggcattcgatctcttccgactaatgctcgaagagtgcccttctgagaaaagcgagtttgttgccacagcagttctcagcgcagttagtgtgccattgggtttgctgatgggggagcagatgcatggactgattgtgaaggatgggttgctggattttgtatctgtggaaaactcgcttgtcacgatgtatgcgaaggctgggtgtatgggtgctgcgtttcatgtgtttgagtcatcgagggagaggaattcgatcacttggtcggcgatgattactgggtatgcacaaaatggtgaggcagacagtgcagttagtatgttctcacagatgcatgctgctgggttcacaccaacagagttcacttttgttggggttctcaatgcaagtagtgatttgggagcattggcagtagggaagcaagcccacggtttgatggtgaagcttgggtttgaggttcagatatatgtgaagagtgcactggtggacatgtatgcaaaatgtggttgtattgctgacgcaaaagaagggtttgatcagttgtacgaggttgacattgtcctttggacagcgatggtttctgggcatgtgcagaatggggagcacgaggaagccctgacattgtatgccaggatggacaaggaaggtatcatccccagtaaatcgactatagctagtggtctgagagcatgtgctggcattgcagcactggaaccagggaaacaattgcacacgcaaatcgtgaaatatgggttaggtttgggggcccctgttggaagtgccttgtctacgatgtattcaaagtgtgggaaccttgaagatggcatgtctgtcttcagaaggattcctgatagggatgttattgcatggaactcaatcatttctggtttttcacaaaatgggtgtggcaatggtgcactggatctttttgaagaaatgaagatggagggcactatacctgataatataacattcattaatatattgtgtgcttgcagtcatatgggtctagttgacagaggatgggaatattttagtttaatgacaaaagattatggtttaactcctaggctggatcactatgcttgcatggttgatattcttagccgagcagggatgcttaaggaagcaaaggatttcatagagtccattactattgaccacggaacatgtttgtggcgtatagtactaggagcatgtcgctctttgcgagattttgatgtcggagcatatgctggtgaacggttgatggagttaggtaccggagattcctcagcatatatattgctgtcaaacatctatgcttcccagagaaaatggaatgatgttgaaagggtgaggcatttgatgagacttcgaggagttaacaaagatcctggatgtagctgggttgagcttaacagccgagttcatgtgtttgtagttggcgaacagcagcatcctgaagcagaaaatataaatgcacagctgagaaggctagctaaacacatgaaggatgaaggttaccactcatcatctaagttatcgtttgatgaagagctgggtccattggcagaatctcatgaagaagatcaactggaatggatatctgcagcttatagctga
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| Protein seq | MLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEGYHSSSKLSFDEELGPLAESHEEDQLEWISAAYS |
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| Function | Pentatricopeptide repeat-containing protein At2g33680 [UniProtKB/Swiss-Prot:P93005] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0017190 | OsKeNa_01g0017190.01 | Chr01 | 15597246 | 15599135 | - | NAM | ||
| CDS seq | atgctctcctcctccaccgtccttccgtcgccccattccttcgctgccgccttcaccgccgccgcccgtgcggcctccgcgcccgccggcaccgcggcccacgctctcgcttgcaagatcccctctgccgtatccaatgtgtacgtgtgcaccagcctgctcaacatgtactgtaagctgggcattgtttctgatgctcgcagagtgttcgacggaatgcctcagcgcaactcattttcctggtccaccatggtggcaggttatgctgcagagaaatgctccgaggaggcattcgatctcttccgactaatgctcgaagagtgcccttctgagaaaagcgagtttgttgccacagcagttctcagcgcagttagtgtgccattgggtttgctgatgggggagcagatgcatggactgattgtgaaggatgggttgctggattttgtatctgtggaaaactcgcttgtcacgatgtatgcgaaggctgggtgtatgggtgctgcgtttcatgtgtttgagtcatcgagggagaggaattcgatcacttggtcggcgatgattactgggtatgcacaaaatggtgaggcagacagtgcagttagtatgttctcacagatgcatgctgctgggttcacaccaacagagttcacttttgttggggttctcaatgcaagtagtgatttgggagcattggcagtagggaagcaagcccacggtttgatggtgaagcttgggtttgaggttcagatatatgtgaagagtgcactggtggacatgtatgcaaaatgtggttgtattgctgacgcaaaagaagggtttgatcagttgtacgaggttgacattgtcctttggacagcgatggtttctgggcatgtgcagaatggggagcacgaggaagccctgacattgtatgccaggatggacaaggaaggtatcatccccagtaaatcgactatagctagtggtctgagagcatgtgctggcattgcagcactggaaccagggaaacaattgcacacgcaaatcgtgaaatatgggttaggtttgggggcccctgttggaagtgccttgtctacgatgtattcaaagtgtgggaaccttgaagatggcatgtctgtcttcagaaggattcctgatagggatgttattgcatggaactcaatcatttctggtttttcacaaaatgggtgtggcaatggtgcactggatctttttgaagaaatgaagatggagggcactatacctgataatataacattcattaatatattgtgtgcttgcagtcatatgggtctagttgacagaggatgggaatattttagtttaatgacaaaagattatggtttaactcctaggctggatcactatgcttgcatggttgatattcttagccgagcagggatgcttaaggaagcaaaggatttcatagagtccattactattgaccacggaacatgtttgtggcgtatagtactaggagcatgtcgctctttgcgagattttgatgtcggagcatatgctggtgaacggttgatggagttaggtaccggagattcctcagcatatatattgctgtcaaacatctatgcttcccagagaaaatggaatgatgttgaaagggtgaggcatttgatgagacttcgaggagttaacaaagatcctggatgtagctgggttgagcttaacagccgagttcatgtgtttgtagttggcgaacagcagcatcctgaagcagaaaatataaatgcacagctgagaaggctagctaaacacatgaaggatgaaggttaccactcatcatctaagttatcgtttgatgaagagctgggtccattggcagaatctcatgaagaagatcaactggaatggatatctgcagcttatagctga
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| Protein seq | MLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEGYHSSSKLSFDEELGPLAESHEEDQLEWISAAYS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.136113 | 0.168805 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0374200 | RBH | 0.330985 | 0.0 | 0.270251 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g27650 | RBH | 0.223829 | 0.0 | 0.069568 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0374200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017510 | RBH | 0.100516 | 1.379234 | 0.671120 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003380 | RBH | 0.0 | 0.434799 | 0.479772 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017420 | RBH | 0.0 | 1.179607 | 0.649592 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016780 | RBH | 0.0 | 0.093423 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016820 | RBH | 0.0 | 0.0 | 1.792872 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0260700 | RBH | 0.135386 | 0.694321 | 0.221744 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016970 | RBH | 0.0 | 0.0 | 0.058515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0276500 | SBH | 1.613506 | 13.080957 | 5.8307345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017050 | RBH | 1.246416 | 3.340864 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016800 | RBH | 0.097526 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016670 | RBH | 0.0 | 1.256041 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017180 | RBH | 0.0 | 1.411790 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016910 | RBH | 0.198677 | 0.000000 | 1.025704 |
