Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0016940 | OGI:01060230 | 6/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:15334461-15338649 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggaaacgcgatgtcaggccacaagggtaagcagatcctaaatcaacgctatatatatatatatatcatccagtacgtacaaccacacatctctactccttaaaaaattcaaattggtgttggtgatagtgaagccaaagcagatataggatctaacatacaaagcagacatgcgatccaacatacaaaccatcgacacgtttggagcgacaaaaataaaagaagacgtacacgcgatccggaacaaaaaaaaaaatcgtaaaaaacagaaacgccccgcaacctgcgccccctcctccgcgcgcctccatcgccgccccgcaccctcccatcgcctctcctccgcgctgcccctccaccagcaggcggcgcggtccatcgccgccccgcgccctcccctcgcctctcctccgcgccgcccctccaccagcagccatctccacaccgcgccggcgcccctctcctctccacccgcgccgccgccgcccctcgcctccccaccgcgcctctacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggcgaccctcgcctccccaccgcgcctccacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggctaccctcgtctctccacccgtgccgccctcgacctgcgccgcctcctcgccgccgtcgaacgccgacgcccctcgacgccctcgaccgccgctgcctcctcgccgccctcgaccgccgacgccccgcgccgccaggccgcagccacctccgccggtcacgatcgccgtcatctgaaggtatgtatcccctgacgatatggccgcaacatgttccagtaagaagctcaatccgtggtgtgattttgagccagctgttacgattaacctggctctaggacatctgctgataatatttattttctaaatcatctatgtgatgacgtcgaccattcctgtgcacctgtccaactcctgttttctactccttgatttccatgtatatacagcttgagatggtttgattttcttttttgatcaagctatctgaatcgtcttgttctcgaaacatccctataatgtggtttattttttttaccgtgtattaaaccaaatgttaggtgtaggcaatgagctcaagtgttcatttatcatcagttcatgtttcaagctttgtgaatcccttctttcatcacaaatacattaagtaataatttttgcaatcaagtagtaatatcccattttttatgactacgtggtttgtcatgtcatgctcataagtaagaatattaagtttctttgatttgtgattgttgaatgactatgtggtttgtcatgtcatgctcataagtaagaatattaagtttctttgatttgtgaatgttgaatgactatgattctgaacgtttacatcaaccgatgagaaaaaaacaaccatcagcagcactgagattctgccttatggtttgtactggattgaactctaataaatttggacttgtgcatttcagggttccaatggatgatgctaaattaattcttcaggtctatgatgctaaattggttagtccatgttttgcactgatattatcactgatctgtaattgttcttgcagaactcttaaggatcatctgaagattgaatttgaaagagcagtggactgatgtgctacttcattttattactttgcatgctctgagatcaacaatctctcatgatagatagcatattacgtaatgctggagacgtggatagagattagtacattcattacatatgatagatagcatatcccatttttgatgactatgtggtttgtcatgtcatgcacataagtaagaatattaggttgctttgatttgtgaatgttcaatgactatgattctgaaggtttaatcaaatggtacctttttttttctaaagggtttcagcaatccatattattatccatttactgttagtgccactaatcatggttgctgctctttcaaatatgatgctgtgcagcatggaaacaaaaattggtttctctttcatgttaacagaagctatgaaccatcctaatactaatttatcaatggctattatgcatctgttcaatagtgactcgatcagttatgtgatctacatcagtgagataaccgagatcaaattattatgtgcatgtgtgacaaaatatttgctgtttaattttccttccacccactatagcatacatcagtgatataattgaaatcaaattattaatgtgcatgtgtgacaaaaaaaagaagttattatctgcatgtgtttctcaaatttagatagcaggcctaatcttttatcgagctaggagaagccctgagtgccctggttaggaacaacctggagctatggttgatgaatcatgagtaaagagttttcggttctgtcagaatgaaaaatgcctgaccatagctctgaagatgagtacatcttttgcaagtcttgatctgtgcacctcttcagctgactgccagcatgaaaaaaatatgattatgattaggctttttgcaaaacttggatttgtgcacctttttaattagggatggatggcaatatgccaatatgattgctgtatagtagcttgaggctttgaggttgatgaagggtacagtgcttcttcctgactttttttttgtttcaaaatagctttctcggtgcctttttgtttgcttatgaatttatagcatttgtgtagagttaatgattttatatgtcattataaatcagttctttcatgacccaaataaaaatctaactctaaagctacaattttattatcgttttttgtgaacctaaatatacaattacccacagatttgtatcaggagaaacaatctcattatccttaaaattatctaggtattcaatatgaattttatatgtgagcatgatcatatgttcagattgatttcgtttaagtttacatactgatattaatttgatgatctactaagttcgaatgccttagaagaaaataattatgccttttatttattcttctgacacagtccaagtctgtttggagaaggaaacaggctaggaaaaaaagtgtgatcatggtccgctgcaagaaaagaggtgcatttcgtactatacttcttttctctattggatcatttagtgtgaaaatccaacatttttttggctctaagtgaacagatgtttttttaaagggctcgggtcatgaaaattgaactgtaattatacaatggttattgttattactgttgcaaccggacgccatttgatgttatgcttggacggatgaacacattcagatttattattacttggagacaagatgccaaatatatgttctggtcatccatgggaaccgtttgggagggttgtgtttgcacacgcttttgcttgtacataaagatttatgttctagaaaccagtggaaatcatttttggtcggcaattgactgtcgtaagctgaatcatttttggcaatgggaatgagatcaatttgcacacatttaattataggtatttgctgtgtagcatgcattggtttgtacttgtgcattaatcttgaagttcactggtctacgagggaaacttcgttggagggcggcaactgtcatggttcatggatgcatacgaggtgaccctcctaatccagtggattggccaccattattggttaatattgattttgattcctgatttccttgcagcacaacgccacctggtggctgacaagccggcaagtacgagtatgtcgattagttgtgcatctttattccatgccgctatcatatttctgtgcattctaggaaccattgaccagtggcactctgccaggaaagtggctaataatgtatcttgttgctacttatccagatctacatataatctctttggtagtaattttggactaatccctgctgcatcctcggtttattgaattgcattttaggaaaagcaacaatgggaatctggagcacaagtcatcaatggcgatctgcagaagataaatcaaacctgtgatctgaatgaagctcatagtttttcccaactccttagtactactacttgctagctgattctgattagatataattgttgatggtttcgaattaatttctaaacaatatgatattttgaacttttcct
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| CDS seq | atgggaaacgcgatgtcaggccacaaggaaacgccccgcaacctgcgccccctcctccgcgcgcctccatcgccgccccgcaccctcccatcgcctctcctccgcgctgcccctccaccagcaggcggcgcggtccatcgccgccccgcgccctcccctcgcctctcctccgcgccgcccctccaccagcagccatctccacaccgcgccggcgcccctctcctctccacccgcgccgccgccgcccctcgcctccccaccgcgcctctacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggcgaccctcgcctccccaccgcgcctccacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggctaccctcgtctctccacccgtgccgccctcgacctgcgccgcctcctcgccgccgtcgaacgccgacgcccctcgacgccctcgaccgccgctgcctcctcgccgccctcgaccgccgacgccccgcgccgccaggccgcagccacctccgccggtcacgatcgccgtcatctgaagcacaacgccacctggtggctgacaagccggcaagtacgagaaaagcaacaatgggaatctggagcacaagtcatcaatggcgatctgcagaagataaatcaaacctgtgatctgaatgaagctcatagtttttcccaactccttagtactactacttgctag
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| Protein seq | MGNAMSGHKETPRNLRPLLRAPPSPPRTLPSPLLRAAPPPAGGAVHRRPAPSPRLSSAPPLHQQPSPHRAGAPLLSTRAAAAPRLPTAPLPLAGEAPPLHLHQKPSPHRAGDPRLPTAPPPLAGEAPPLHLHQKPSPHRAGYPRLSTRAALDLRRLLAAVERRRPSTPSTAAASSPPSTADAPRRQAAATSAGHDRRHLKHNATWWLTSRQVREKQQWESGAQVINGDLQKINQTCDLNEAHSFSQLLSTTTC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0016940 | OsKeNa_01g0016940.01 | Chr01 | 15334461 | 15338649 | + | NAM | ||
| CDS seq | atgggaaacgcgatgtcaggccacaaggaaacgccccgcaacctgcgccccctcctccgcgcgcctccatcgccgccccgcaccctcccatcgcctctcctccgcgctgcccctccaccagcaggcggcgcggtccatcgccgccccgcgccctcccctcgcctctcctccgcgccgcccctccaccagcagccatctccacaccgcgccggcgcccctctcctctccacccgcgccgccgccgcccctcgcctccccaccgcgcctctacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggcgaccctcgcctccccaccgcgcctccacccctagccggagaggcgccgcccctccacctccaccagaagccgtccccacaccgcgccggctaccctcgtctctccacccgtgccgccctcgacctgcgccgcctcctcgccgccgtcgaacgccgacgcccctcgacgccctcgaccgccgctgcctcctcgccgccctcgaccgccgacgccccgcgccgccaggccgcagccacctccgccggtcacgatcgccgtcatctgaagcacaacgccacctggtggctgacaagccggcaagtacgagaaaagcaacaatgggaatctggagcacaagtcatcaatggcgatctgcagaagataaatcaaacctgtgatctgaatgaagctcatagtttttcccaactccttagtactactacttgctag
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| Protein seq | MGNAMSGHKETPRNLRPLLRAPPSPPRTLPSPLLRAAPPPAGGAVHRRPAPSPRLSSAPPLHQQPSPHRAGAPLLSTRAAAAPRLPTAPLPLAGEAPPLHLHQKPSPHRAGDPRLPTAPPPLAGEAPPLHLHQKPSPHRAGYPRLSTRAALDLRRLLAAVERRRPSTPSTAAASSPPSTADAPRRQAAATSAGHDRRHLKHNATWWLTSRQVREKQQWESGAQVINGDLQKINQTCDLNEAHSFSQLLSTTTC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.564743 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g34140 | RBH | 0.000000 | 0.0 | 0.028226 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017260 | RBH | 0.000000 | 0.0 | 1.744430 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017240 | RBH | 0.000000 | 3.828768 | 2.766474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016930 | RBH | 0.000000 | 0.0 | 0.558624 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
