Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0014670 | OGI:01037030 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:12488215-12493384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcagcaagcaagcgcagcggaggcacacggatactactccacgcataccataccaccacttacctaccgctccccacatctctcctcctcctccctttttcctctcctcttctctcctcacctcccaaatctgaaggaatccgccattctctgagcttgctctgtgtgtgtgcgtgtgtggagttctttctttggttggagaggaggtgatgttttgtgtagcttcgggcgtggtcgatccggggtgttgctgttcttggtgggtggcctgctgctgctgctgaggaggtgaaggaggagatctggagatctctcaggtggtggctgcttctgcctctcttcttgattgtgattgctgctgcaatgtgcctacctttgttgtttgtttcttggtctggatctcggggtgaccgtcatgctcttcttgcatttgatttgtaatttttttcccggattattattcttgggtgaatgcttctcttgggatggttgagttacctggaaaagatccaggaggggagttcttggggaatggatgattgatgattcttgataaaaggaaccatctttcttttgtccttttggttgcaagaaatcaagctagaaaagataaagagaggaaaacaaagcaactagtatcttttttcttgccaactgtgggaagaagatgtaaagtcttgccaaccatggtagctctagctagcagcggctgcttggttcgtactccactttgtacttgcttgctgaggattgcttcacgtgtaaaacgccctcaagggccatgatctttcctccaggtccagggcggcgaacaaacacggtgAaaaaaaaagagaattaaatgtgctagctgttgatccttgtgcatgtcggtacagggttgggttcgtaccgtgatcggcattgcgggaatttaatcccctgtacagccttggagcagaggagcagtaacttcttgcctttgcttcccttccagcccaagatagtgtactcgtttgtcttaattggcgctctgtagtagtagttcatgaatcgggaattattatacgctcgtactgcgaatgtagatgcttgcatttgtttttcactgcgaaaagagctgtaaggacattagtatttactgcattgtgtggtaattgcagctgagctagatgggcagctaacgtggtcatctgaatttgtttgtttgcaggagcgaagcattgacattccgctatggaggctccttcgtcgtccccgtcatcgccaagtctgaaagatcatctctcttcgccaactggccctttgcatctcaaagtatgggaggtcatatgcattgtcttgggggctttcatggtggtcatcttctttgtaaccgtgtggctcacgatccggagtcggaagagggttagacgggcttcggcaaatatcccaatcacccaaatccctgccatttccaaggaaatcaaggaagtgagggtggagcaagtcccaacaagcgattttgcagcacatgatggagtcctgatgacaatccaagacaagtctagtgagaaggagtcagacaaggtcatggtccatttgggtgtaagcaaatcgaagcgtggcgatgagagccactcaggatcattccgttacatggacaaggatttaggattccagtcagctgatgaaggaggctcaggaacatttcggcataattcagctcatgcaataactgctccttcacctttggttggcctgccagagttctcttacctaggctggggccattggtttactttgagggatctggaagttgctactagccgtttttcaaaggataacattcttggtgagggtggatatggtgtagtttatcgtggccaactgatcaatggcactcctgttgctgttaagaagcttctcaataacctgtaagtcttgccctgcttatcagagtttgatctttttgtttattctccttgtctcttgtctccaataccacaaatcagacagctttaagtttttccaatcgatgttttgtaaacttgcagaggacaggccgagaaggaattcagagttgaagttgaggctattggtcatgttcgccacaagaacttggtccggcttctgggttactgtgtggagggtactcaaaggtattgatatttctcttgtatctattgcaatgttcatatttccaagctacatgtactaccaagcaagaatattcttctagacattccatgctctctgagacctctaggttcatttgactgcaatacttgtatggaattctaagacatatttgttaactttgtgtgcttttttcagaatgcttgtctatgagtatgtaaacaatggaaacctagagcaatggcttcatggagctatgagtcaccgtggttcccttacatgggaggcccgtgtaaagattcttcttgggacagctaaagcgtaagttcttcctggagatgtcatttctttttgctagtacttcaccatatttttgttatattgtcagtccgccttagggcaatgtaatcttatgttcctatcatgttccaaattgcattaccttttctttcctggagctatttctgttattttacttgcataacaacatgacatccctctttatttgagtataactgagctgaagcacataaattcctaatacaacactgaactggtttgttgctgaactttgttcactttctcttctccctgttttttccatgtgtgaattgaactaaatcgaagaattatcactacctatctgcaggcttgcttacttgcatgaggcaattgaacccaaagtggtgcaccgtgatatcaaatccagcaatatattgattgatgatgattttgatgccaaagtatcagactttggtttagctaaacttcttggtgctggcaagagtcatgtcactactagggttatgggaaccttcgggtatgttgtgttaattgtgaacaagatttccatggttaacggaatgttagattgctagtactagttaatgatgtgttgcattgcactcattgcagctacgtggcaccagagtatgcaaacactggactcttgaatgaaaagagtgacatttacagctttggggtagtacttctagaagcaattacagggagggatcctgttgactatggtcgtccagcgaatgaggtattgataaattggttaaaataatttgttctgataacatccatgtgcattctccttttatacttgtgtatggtatgctgcatctcaccaaattgagtctcttaactccaagtttaattatttttattatgatctagaatgcttaatgttgacctataagttgttctatacgtgcagttgtgtgctgtgtaattcttgtgcttttgtggatattttctcctatttcataacaggacataatgtttatgccattggcttagacgcttgtgatgttcgttagacttggaactgtttcctttatctgaggttgtaggctatatatactaaactggctggataatgacactgaaattctgcttaaatgtgacgcacaacatcatagacatataagcatgctgcagatatctgtgcccttccagaaattttgttattattctattttacttaagctgaccaggtaaacatggcacgagctctaccaattcacttcagaagtgataaataaaactacatcgctctactacacttgaaggaaagatcagacaataatcaatagtctaactgaagcaacattgtgacatttgttttacaacacttcaagtgaacattatccaaccatagattgctgacactactgttgttcctgcccttcgtgcgtcctgatatattggactggcctggaagctacggcattgaagttacataaattgccatctgaacatcttcagagcagtctagctatgaagtgtaacaatttaacctagctgtccttgagttggaaaagcttctagcaatgctgtaaattgttgggccagcctgtcaaatcattatccaagaccacacatgtagcaactattggcttgaaagtaccatccgaaacctaatgcagctaacaactatgctgctgcatatttaatatttcggagttcattgaaaaaatagcataacttggctattgcagaataaagtatcatctacaatatttgattttatgacacagtgctgattgctgtttgtctcctgttaacggttcctttaataaaaggaaagaaaacattctctctgcttctttgattggacattttgatttgtgccacatgcaggtaaatcttgttgactggctaaaaatgatggttgctagcaggcgatcagaggaggtggtggatcccaccatagagacccggccttcgacaagagctctcaagcgtgcacttttaactgctctgagatgtgtggatccagattcagaaaagagaccaaagatgggtcaagttgtgaggatgctggaatcggatgacccaattcctcgtggggtatgtattactgtattacaggaaataaggactttatccttgttttcttaatgcatgttttactttagttctttctttacttccatttgaaacatttcacctgattatgtggcagtcttgaattaactctgttcttagcattgtactccaaatattagctggcacatgattcatgccatactgatcagataaattgtatggaagcaggacagaagatctaagcacaaccgtggagggagcaccgaaatggattcccaaagggacaacaactccgacacggacaagagtgacaatccagattccaaaccaagcaggagcagagcctcatcttccaaatgagaacatccagcattcctctcctattatattcctttggtccataacggaccgtcccccctctgtttctgctgacgaattggtaaccgccattgctgaagcttgaatacaaaagaagctcgaagacacattggttctcattccttttttttcttctttttcgtggctgtaacggtttatgatttatttgtagacaaggtgttggtttttctacttatgaatttatatatatatatacatatacttaacggtggtcttgacaatttgttgttgtaagtttttaacagtgtgtacagttgtagcattatgaatactggtcgaacccgaatatttgtgaatgatatatattccaattggaagcctctgcccgttttgaaat
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| CDS seq | atggaggctccttcgtcgtccccgtcatcgccaagtctgaaagatcatctctcttcgccaactggccctttgcatctcaaagtatgggaggtcatatgcattgtcttgggggctttcatggtggtcatcttctttgtaaccgtgtggctcacgatccggagtcggaagagggttagacgggcttcggcaaatatcccaatcacccaaatccctgccatttccaaggaaatcaaggaagtgagggtggagcaagtcccaacaagcgattttgcagcacatgatggagtcctgatgacaatccaagacaagtctagtgagaaggagtcagacaaggtcatggtccatttgggtgtaagcaaatcgaagcgtggcgatgagagccactcaggatcattccgttacatggacaaggatttaggattccagtcagctgatgaaggaggctcaggaacatttcggcataattcagctcatgcaataactgctccttcacctttggttggcctgccagagttctcttacctaggctggggccattggtttactttgagggatctggaagttgctactagccgtttttcaaaggataacattcttggtgagggtggatatggtgtagtttatcgtggccaactgatcaatggcactcctgttgctgttaagaagcttctcaataacctaggacaggccgagaaggaattcagagttgaagttgaggctattggtcatgttcgccacaagaacttggtccggcttctgggttactgtgtggagggtactcaaagaatgcttgtctatgagtatgtaaacaatggaaacctagagcaatggcttcatggagctatgagtcaccgtggttcccttacatgggaggcccgtgtaaagattcttcttgggacagctaaagcgcttgcttacttgcatgaggcaattgaacccaaagtggtgcaccgtgatatcaaatccagcaatatattgattgatgatgattttgatgccaaagtatcagactttggtttagctaaacttcttggtgctggcaagagtcatgtcactactagggttatgggaaccttcggctacgtggcaccagagtatgcaaacactggactcttgaatgaaaagagtgacatttacagctttggggtagtacttctagaagcaattacagggagggatcctgttgactatggtcgtccagcgaatgaggtaaatcttgttgactggctaaaaatgatggttgctagcaggcgatcagaggaggtggtggatcccaccatagagacccggccttcgacaagagctctcaagcgtgcacttttaactgctctgagatgtgtggatccagattcagaaaagagaccaaagatgggtcaagttgtgaggatgctggaatcggatgacccaattcctcgtggggacagaagatctaagcacaaccgtggagggagcaccgaaatggattcccaaagggacaacaactccgacacggacaagagtgacaatccagattccaaaccaagcaggagcagagcctcatcttccaaatga
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| Protein seq | MEAPSSSPSSPSLKDHLSSPTGPLHLKVWEVICIVLGAFMVVIFFVTVWLTIRSRKRVRRASANIPITQIPAISKEIKEVRVEQVPTSDFAAHDGVLMTIQDKSSEKESDKVMVHLGVSKSKRGDESHSGSFRYMDKDLGFQSADEGGSGTFRHNSAHAITAPSPLVGLPEFSYLGWGHWFTLRDLEVATSRFSKDNILGEGGYGVVYRGQLINGTPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLEQWLHGAMSHRGSLTWEARVKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFDAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVVLLEAITGRDPVDYGRPANEVNLVDWLKMMVASRRSEEVVDPTIETRPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESDDPIPRGDRRSKHNRGGSTEMDSQRDNNSDTDKSDNPDSKPSRSRASSSK |
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| Function | Probable receptor-like protein kinase At5g18500 [UniProtKB/Swiss-Prot:Q8LEB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0014670 | OsKeNa_01g0014670.01 | Chr01 | 12488215 | 12493384 | + | NAM | ||
| CDS seq | atggaggctccttcgtcgtccccgtcatcgccaagtctgaaagatcatctctcttcgccaactggccctttgcatctcaaagtatgggaggtcatatgcattgtcttgggggctttcatggtggtcatcttctttgtaaccgtgtggctcacgatccggagtcggaagagggttagacgggcttcggcaaatatcccaatcacccaaatccctgccatttccaaggaaatcaaggaagtgagggtggagcaagtcccaacaagcgattttgcagcacatgatggagtcctgatgacaatccaagacaagtctagtgagaaggagtcagacaaggtcatggtccatttgggtgtaagcaaatcgaagcgtggcgatgagagccactcaggatcattccgttacatggacaaggatttaggattccagtcagctgatgaaggaggctcaggaacatttcggcataattcagctcatgcaataactgctccttcacctttggttggcctgccagagttctcttacctaggctggggccattggtttactttgagggatctggaagttgctactagccgtttttcaaaggataacattcttggtgagggtggatatggtgtagtttatcgtggccaactgatcaatggcactcctgttgctgttaagaagcttctcaataacctaggacaggccgagaaggaattcagagttgaagttgaggctattggtcatgttcgccacaagaacttggtccggcttctgggttactgtgtggagggtactcaaagaatgcttgtctatgagtatgtaaacaatggaaacctagagcaatggcttcatggagctatgagtcaccgtggttcccttacatgggaggcccgtgtaaagattcttcttgggacagctaaagcgcttgcttacttgcatgaggcaattgaacccaaagtggtgcaccgtgatatcaaatccagcaatatattgattgatgatgattttgatgccaaagtatcagactttggtttagctaaacttcttggtgctggcaagagtcatgtcactactagggttatgggaaccttcggctacgtggcaccagagtatgcaaacactggactcttgaatgaaaagagtgacatttacagctttggggtagtacttctagaagcaattacagggagggatcctgttgactatggtcgtccagcgaatgaggtaaatcttgttgactggctaaaaatgatggttgctagcaggcgatcagaggaggtggtggatcccaccatagagacccggccttcgacaagagctctcaagcgtgcacttttaactgctctgagatgtgtggatccagattcagaaaagagaccaaagatgggtcaagttgtgaggatgctggaatcggatgacccaattcctcgtggggacagaagatctaagcacaaccgtggagggagcaccgaaatggattcccaaagggacaacaactccgacacggacaagagtgacaatccagattccaaaccaagcaggagcagagcctcatcttccaaatga
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| Protein seq | MEAPSSSPSSPSLKDHLSSPTGPLHLKVWEVICIVLGAFMVVIFFVTVWLTIRSRKRVRRASANIPITQIPAISKEIKEVRVEQVPTSDFAAHDGVLMTIQDKSSEKESDKVMVHLGVSKSKRGDESHSGSFRYMDKDLGFQSADEGGSGTFRHNSAHAITAPSPLVGLPEFSYLGWGHWFTLRDLEVATSRFSKDNILGEGGYGVVYRGQLINGTPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLEQWLHGAMSHRGSLTWEARVKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFDAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVVLLEAITGRDPVDYGRPANEVNLVDWLKMMVASRRSEEVVDPTIETRPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESDDPIPRGDRRSKHNRGGSTEMDSQRDNNSDTDKSDNPDSKPSRSRASSSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056668 | 9.212599 | 3.980129 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0323000 | RBH | 0.0 | 0.043673 | 5.613643 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g21960 | RBH | 0.0 | 0.027787 | 1.366999 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0323000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014860 | RBH | 0.0 | 24.181932 | 18.621393 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014680 | SBH | 0.000000 | 0.000000 | 62.318153 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014910 | RBH | 0.000000 | 24.429724 | 15.423037 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014360 | RBH | 0.0 | 0.904892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014440 | RBH | 0.922730 | 61.841881 | 24.839966 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0205200 | RBH | 3.066469 | 8.585762 | 15.486546 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014360 | RBH | 0.039369 | 1.802395 | 1.398872 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0201900 | RBH | 4.085382 | 2.1780895 | 21.5032885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014380 | RBH | 0.065892 | 0.656275 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014420 | RBH | 0.080459 | 17.293102 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014410 | RBH | 0.000000 | 52.328762 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014510 | RBH | 0.080769 | 3.347107 | 2.405951 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014220 | RBH | 0.0 | 19.350363 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014540 | RBH | 0.068916 | 9.160307 | 7.820955 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014350 | RBH | 0.0 | 39.333588 | 14.884858 |
