Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0013840 | OGI:01034260 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:11456037-11460240 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagatgcataccgagatgctgtcagcgacaggctttaatttagcgcagagaaaatttcccatgctgctgacagatgacacggatggcgggtccgcttccgctgtcgttagctagggtcccatttgattcggactgattagtactttgatctccaattttttttcccttaaagaaagacgcagatttgagcttggctctttatggatgattaaatatattatagccaattatttacagggtttacatgtaagtaatccatgtgaaccgtggtacgcgtaattatttgtgagtccataatctgaaaataatgcagtccaagtatgttattgtcatcacattaactttttaagtcctttttcaccataaaataccttagcttttaaaatggtccagtaacatgatccttatggtgacgttatactctactgtattcaacaaaatgtacttcttaggagtctgtatcaatgataatcacaatcgtactgtaccactcaatacaaccataaagatgttattgtaccattttaaaaggtaaagagattttacggcgaataaggacttaaaaaagttaatgccatatgacaacgacatatttagcttgatcgtagtattttcagattatggactaataagttacacgtgttctcaaactactatttgaccaacaactttctacctcagtatatattgagtagatagctcattctaagctactccctctccctccagtgcgtagtcaaacttttataattttgactctttagtttaaaagaactaaaacaacatatatggatttgtttttcaaagttctacaaagtaaatatgcatttatttattttatatacattataatagaaaacaaggtcaatgatatattacgaagatcgtgttattatccaaaacgtcaagaattatggaaggagagagtgtcttttaggtttataatatataataattgatatatagttaatctttaggcattgaatgatacgattgtgatttttattgatacagactctcatgcctgtaagttttgtacgtgtaagttttgttgaatacagtacagcatattgaaggctcaatttacctaattttaaaaattaagtgcggaaaaaccattttctttcaataaaaagtatgcctagggaagaatgagatctgctggtggtatatcaaagactttaccataaataaataatgcacgagatttgatggcccaactgctaggagacatactttgacgtatttttcacattattgatttaattataaataccactccactaggatatactctcctgtctcaaataagtgtactcctctaatttagggccctttgaatcgcaggattaagaaaacgtaggaataggaaaaacgtaagattttgataggaatgtaagtgtaaaacagaggattgcaaaacacaggaaaaacatagaaatgaccgtttgattgaaccacaggaaaaacacaggaattggatgagagagatagactcaaaggaaagttagcaagaggttgaagctcttgctaaatttccttcaaaatctctataggattgtccattccataggaatttcaaaggattggataggattcaatcctttgtttcaaaggtttcataggaaatttttcaataggattgaaatcctctaaaatttctatgtttttcctccaaatcaaaggagcccttaaaatttaaactagtggagtgcacttgttttggaatgaaggaaatactgtataagggctttgaaggaagtatcgttgacttgagaaaagcacaatacaatgactaatactccatctttttcataatgttatctatttagatttattaacatcaatatgaatatggaaaattctgaaatgacttatattgtaaaacggaggaagtactttactagagcaaactacgccatccattttataatacatgatgtattttatttattttgttaggagaagattttaactaataatttactctactatggattatattttttgtggagcaaaattgatgctactagttcgtattcaaaagtattttggtatgattatatttttttataatcatactattttgtcatataagtgatttataagggaatcggttgtttgtcaaaaccatgtcctaccgaaataaaatacaatctccgttccaaaatgttttacgccgttgacttctttaaaaatgtttgaccgttcgtcttattcaaaaaatttaagtaattgttaattctttttctatcatttgatttattgttaaatatacttttatgtatacatatagttttacacatatcataaaagtttttgaataaaacgaacggttaaatatatttaaaaaagttaacggtgtcaaacatttagggaaggagggagtacgtcctatgtttaaaatggagggagtaatggtttacacgttgaggtggcgcacgaatcaggcgaggaacgtgagctgcaagtagcccagcacgaatgggcgccttgtgggctatctattgattatactactactactaatctactatatttccacgcgtagcacgccgtaatacgtgtccggttcgtatatattcgtacatgacatgcggttatgataatactcgtagagtatatcatttggttccaatcttagcctcgtttttcacgtggaaacttgatagaaaagggtttgtcggtgtttggctcctagctcgacgagaacgggaacggggtgcgcgcggcctctcgtttttgtttacactctgctgggctcagcttcatattatagcctgattttggtttgatttttggattaaaatgttgagagttctttcccttctttctttttttcctaaaaaaagagagtatatgtgtcggtagtggggtcaacaaagacaggggacttttaactcgtcttgtctcgatggatttaaggagaaagggactctgttcccatcgttggactgcctgtcattttttgcatgaacgagtgcagcatgtacagggttgcggtagcacgtagcagcagcagtagtacgtggccaagctgctgacacgatcagcaacttgccttggctagacatttttggccactatggcgtaaatgccgcggatggcgagcatgctagaagccaagaaaagcgattttaaaatcatgcacgcacgtatccttccctttcatagctgcgaccgagctttcatcaatgtggcgggcgatttcacttcacttcaaccgcgtaagtaaacatactactgctcggtggttggatcgccagcagcgcgcattcattgccggcatgtggctgtgccgccgccgttactctcgccggggccggcagcagcatcgctgcaacggcgcacgcatgcaaaacagcaaaagcatccccagccagccagccatatgccgttttctcctcgcagtcgcagcagtgcaggatttcaaagtacagaattactacatgcttgttagttactgctgtgaatccgtgattgattggttctccgttttctcgccatcaggtggtccctgatcgccggccacttgcccgggcggacggacaatgagatcaagaactactggaactcgcacctgagccggaagggatacgagttcctccgcggcggcggcggcggcgccgtcgtcgacgtcgacctcagcaagttgcccggcggcgggaagcggcgcggcggccggacgggccgcagcagcagcgggaaggagaagacgaggacgaaggagaaggacaaggcccccgctccagaagctgcgcacaatgacgacgacggcggcggcggcggcggcggcattgacaacgtctcggcagctagccacagccacagggaggagcaggcacaggcgagcgccagtggtctcacatcagatgggctcgaggagggcccactgggcctaagcgaggagatggtgagtgggcccgtgggaccggtgagcccaaagcctgaggtgggccaggatgggtcttctgcagagagtggctgctgtgggcctagtggatccagtggcccaaccgaggctgtgggccaggacatgggcgacaagtccatggactgggacctggtgggcctggacgatggcttcgccaacgatgacatgtggggctcactctcctgggactacggggagttggtgggcccggatggagttcatcagggcgaggtgctatccgacttgttcttcttgggcaacctgtag
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| CDS seq | atggagatgcataccgagatgctgtcagcgacaggctttaatttagcgcagagaaaatttcccatgctgctgacagatgacacggatggcgggtggtccctgatcgccggccacttgcccgggcggacggacaatgagatcaagaactactggaactcgcacctgagccggaagggatacgagttcctccgcggcggcggcggcggcgccgtcgtcgacgtcgacctcagcaagttgcccggcggcgggaagcggcgcggcggccggacgggccgcagcagcagcgggaaggagaagacgaggacgaaggagaaggacaaggcccccgctccagaagctgcgcacaatgacgacgacggcggcggcggcggcggcggcattgacaacgtctcggcagctagccacagccacagggaggagcaggcacaggcgagcgccagtggtctcacatcagatgggctcgaggagggcccactgggcctaagcgaggagatggtgagtgggcccgtgggaccggtgagcccaaagcctgaggtgggccaggatgggtcttctgcagagagtggctgctgtgggcctagtggatccagtggcccaaccgaggctgtgggccaggacatgggcgacaagtccatggactgggacctggtgggcctggacgatggcttcgccaacgatgacatgtggggctcactctcctgggactacggggagttggtgggcccggatggagttcatcagggcgaggtgctatccgacttgttcttcttgggcaacctgtag
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| Protein seq | MEMHTEMLSATGFNLAQRKFPMLLTDDTDGGWSLIAGHLPGRTDNEIKNYWNSHLSRKGYEFLRGGGGGAVVDVDLSKLPGGGKRRGGRTGRSSSGKEKTRTKEKDKAPAPEAAHNDDDGGGGGGGIDNVSAASHSHREEQAQASASGLTSDGLEEGPLGLSEEMVSGPVGPVSPKPEVGQDGSSAESGCCGPSGSSGPTEAVGQDMGDKSMDWDLVGLDDGFANDDMWGSLSWDYGELVGPDGVHQGEVLSDLFFLGNL |
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| Function | Transcription factor MYB12 [UniProtKB/Swiss-Prot:O22264] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0013840 | OsKeNa_01g0013840.01 | Chr01 | 11456037 | 11460240 | + | NAM | ||
| CDS seq | atggagatgcataccgagatgctgtcagcgacaggctttaatttagcgcagagaaaatttcccatgctgctgacagatgacacggatggcgggtggtccctgatcgccggccacttgcccgggcggacggacaatgagatcaagaactactggaactcgcacctgagccggaagggatacgagttcctccgcggcggcggcggcggcgccgtcgtcgacgtcgacctcagcaagttgcccggcggcgggaagcggcgcggcggccggacgggccgcagcagcagcgggaaggagaagacgaggacgaaggagaaggacaaggcccccgctccagaagctgcgcacaatgacgacgacggcggcggcggcggcggcggcattgacaacgtctcggcagctagccacagccacagggaggagcaggcacaggcgagcgccagtggtctcacatcagatgggctcgaggagggcccactgggcctaagcgaggagatggtgagtgggcccgtgggaccggtgagcccaaagcctgaggtgggccaggatgggtcttctgcagagagtggctgctgtgggcctagtggatccagtggcccaaccgaggctgtgggccaggacatgggcgacaagtccatggactgggacctggtgggcctggacgatggcttcgccaacgatgacatgtggggctcactctcctgggactacggggagttggtgggcccggatggagttcatcagggcgaggtgctatccgacttgttcttcttgggcaacctgtag
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| Protein seq | MEMHTEMLSATGFNLAQRKFPMLLTDDTDGGWSLIAGHLPGRTDNEIKNYWNSHLSRKGYEFLRGGGGGAVVDVDLSKLPGGGKRRGGRTGRSSSGKEKTRTKEKDKAPAPEAAHNDDDGGGGGGGIDNVSAASHSHREEQAQASASGLTSDGLEEGPLGLSEEMVSGPVGPVSPKPEVGQDGSSAESGCCGPSGSSGPTEAVGQDMGDKSMDWDLVGLDDGFANDDMWGSLSWDYGELVGPDGVHQGEVLSDLFFLGNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.164068 | 0.0 | 0.908705 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0305900 | RBH | 0.000000 | 0.729340 | 0.920149 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19970 | RBH | 0.000000 | 0.490542 | 0.236864 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0305900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0014090 | RBH | 0.0 | 0.0 | 0.742959 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0014100 | RBH | 0.0 | 0.0 | 0.708653 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013650 | RBH | 0.000000 | 0.0 | 1.903162 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0189400 | RBH | 3.512617 | 0.0560035 | 4.0204585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013590 | RBH | 0.0 | 0.0 | 0.112196 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0188000 | RBH | 6.309564 | 0.021088 | 3.8528735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013620 | RBH | 0.000000 | 3.566839 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013730 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013430 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013730 | RBH | 0.200235 | 0.0 | 0.286617 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013520 | RBH | 0.276437 | 0.0 | 0.411719 |
