Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0011890 | OGI:01029270 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:9593762-9594790 | ||||||||
| Gene Symbol | YUCCA10, OsYUCCA10, OsYUC10 | ||||||||||
| DNA seq | atggcggtggcggcgaagggtgaggagatgacaccggagcacgaggaagaggtgatcatcgtgggcgccgggcagtccgggctggccgcggcggcgtgcctgtcggtgcgcggcgtggcgagctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcgcctacgaccgcctccgcctccacctccccaagcgccactgcgcgctgccgcgcgcgccgcacgccgccgccgcgcccgactacctcccccgcgacgacttcgccgcctacctcgacgcctacgcctcccgcttcggcgtccgcacccgcctccgccgcgaggtccgctcggcgcgccacgacgccgcccgcgccaggtggctcgtcgaagccgtcgacctcgccacggggaaggcggagcggtacgcggcgaggcacctcgtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccggcatggacacgttccccggcaaggtcgtccactccgccgactaccgctcggccggcgcgttcaaggggaggtccgtgctcgtcgtcggctgcggcaactccggctttgagatcgcctacgacctcgccgccggcggcgccgccgccgtctccatcgccgtgcgcggcgaggtgcacctggtgagccgggaggtctggagcgtggggatggcgctgcagaggtacctgccgacgtgggcggtggacaaggttgtgctgctcatgtgcgccgtcgtgttcggcggcgacaccgcgcggtacgggctccggcggccggccgtcgggccgttctccatgaagatgaccacgccggcgtacccggtgttcgacgtcggcaccttcgccaagatcaggtccggggagatccgcgtcgtgccggccggcatcaagagcgtccgcggcggcgacgtcgagttcgccgacggccggcgccacgccttcgacgccatcgtcttcgccaccggttaccggagcaccaccaagcagtggctcaaggtaattaattaa
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| CDS seq | atggcggtggcggcgaagggtgaggagatgacaccggagcacgaggaagaggtgatcatcgtgggcgccgggcagtccgggctggccgcggcggcgtgcctgtcggtgcgcggcgtggcgagctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcgcctacgaccgcctccgcctccacctccccaagcgccactgcgcgctgccgcgcgcgccgcacgccgccgccgcgcccgactacctcccccgcgacgacttcgccgcctacctcgacgcctacgcctcccgcttcggcgtccgcacccgcctccgccgcgaggtccgctcggcgcgccacgacgccgcccgcgccaggtggctcgtcgaagccgtcgacctcgccacggggaaggcggagcggtacgcggcgaggcacctcgtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccggcatggacacgttccccggcaaggtcgtccactccgccgactaccgctcggccggcgcgttcaaggggaggtccgtgctcgtcgtcggctgcggcaactccggctttgagatcgcctacgacctcgccgccggcggcgccgccgccgtctccatcgccgtgcgcggcgaggtgcacctggtgagccgggaggtctggagcgtggggatggcgctgcagaggtacctgccgacgtgggcggtggacaaggttgtgctgctcatgtgcgccgtcgtgttcggcggcgacaccgcgcggtacgggctccggcggccggccgtcgggccgttctccatgaagatgaccacgccggcgtacccggtgttcgacgtcggcaccttcgccaagatcaggtccggggagatccgcgtcgtgccggccggcatcaagagcgtccgcggcggcgacgtcgagttcgccgacggccggcgccacgccttcgacgccatcgtcttcgccaccggttaccggagcaccaccaagcagtggctcaaggtaattaattaa
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| Protein seq | MAVAAKGEEMTPEHEEEVIIVGAGQSGLAAAACLSVRGVASCLVLERDDCVASLWRHRAYDRLRLHLPKRHCALPRAPHAAAAPDYLPRDDFAAYLDAYASRFGVRTRLRREVRSARHDAARARWLVEAVDLATGKAERYAARHLVAAAGENDERVVPEVPGMDTFPGKVVHSADYRSAGAFKGRSVLVVGCGNSGFEIAYDLAAGGAAAVSIAVRGEVHLVSREVWSVGMALQRYLPTWAVDKVVLLMCAVVFGGDTARYGLRRPAVGPFSMKMTTPAYPVFDVGTFAKIRSGEIRVVPAGIKSVRGGDVEFADGRRHAFDAIVFATGYRSTTKQWLKVIN |
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| Function | Probable indole-3-pyruvate monooxygenase YUCCA10 [UniProtKB/Swiss-Prot:Q9FVQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0011890 | OsKeNa_01g0011890.01 | Chr01 | 9593762 | 9594790 | + | NAM | ||
| CDS seq | atggcggtggcggcgaagggtgaggagatgacaccggagcacgaggaagaggtgatcatcgtgggcgccgggcagtccgggctggccgcggcggcgtgcctgtcggtgcgcggcgtggcgagctgcctcgtcctggagcgcgacgactgcgtggcgtcgctgtggcgccaccgcgcctacgaccgcctccgcctccacctccccaagcgccactgcgcgctgccgcgcgcgccgcacgccgccgccgcgcccgactacctcccccgcgacgacttcgccgcctacctcgacgcctacgcctcccgcttcggcgtccgcacccgcctccgccgcgaggtccgctcggcgcgccacgacgccgcccgcgccaggtggctcgtcgaagccgtcgacctcgccacggggaaggcggagcggtacgcggcgaggcacctcgtcgccgccgcgggcgagaacgacgagagggtggtgcccgaggtgcccggcatggacacgttccccggcaaggtcgtccactccgccgactaccgctcggccggcgcgttcaaggggaggtccgtgctcgtcgtcggctgcggcaactccggctttgagatcgcctacgacctcgccgccggcggcgccgccgccgtctccatcgccgtgcgcggcgaggtgcacctggtgagccgggaggtctggagcgtggggatggcgctgcagaggtacctgccgacgtgggcggtggacaaggttgtgctgctcatgtgcgccgtcgtgttcggcggcgacaccgcgcggtacgggctccggcggccggccgtcgggccgttctccatgaagatgaccacgccggcgtacccggtgttcgacgtcggcaccttcgccaagatcaggtccggggagatccgcgtcgtgccggccggcatcaagagcgtccgcggcggcgacgtcgagttcgccgacggccggcgccacgccttcgacgccatcgtcttcgccaccggttaccggagcaccaccaagcagtggctcaaggtaattaattaa
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| Protein seq | MAVAAKGEEMTPEHEEEVIIVGAGQSGLAAAACLSVRGVASCLVLERDDCVASLWRHRAYDRLRLHLPKRHCALPRAPHAAAAPDYLPRDDFAAYLDAYASRFGVRTRLRREVRSARHDAARARWLVEAVDLATGKAERYAARHLVAAAGENDERVVPEVPGMDTFPGKVVHSADYRSAGAFKGRSVLVVGCGNSGFEIAYDLAAGGAAAVSIAVRGEVHLVSREVWSVGMALQRYLPTWAVDKVVLLMCAVVFGGDTARYGLRRPAVGPFSMKMTTPAYPVFDVGTFAKIRSGEIRVVPAGIKSVRGGDVEFADGRRHAFDAIVFATGYRSTTKQWLKVIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0274100 | RBH | 0.0 | 0.115509 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16750 | RBH | 0.0 | 0.077690 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0274100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012210 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0012230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0011690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011780 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0159600 | RBH | 0.3191205 | 0.175713 | 0.0193365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011730 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0157200 | SBH | 0.7985405 | 0.3050425 | 0.324084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0011730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0011710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0011710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0011710 | RBH | 0.0 | 0.0 | 0.0 |
