Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0008520 | OGI:01021430 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:6764226-6765705 | ||||||||
| Gene Symbol | GELP13, OsGELP13 | ||||||||||
| DNA seq | ggccaccatcacaccgatcgatcgatcaaacttgatcgatattctgaatcatattggcaacaccggagctcgtgcagcgcgtcttgcagcagcgagttgtggtgggacgctagctcgttgatccctctcaggcaccccgtccgcgcgtcgtagtccgccgggccggcgcggccgtagaacgacgtcagcgccggcggcgagcagcctgacgggatcatcccggggaccacgatgctcttcgccccgtgcttcatcagcctctgtttgaagaacaacaaagagagattggtagattagttgctaatttaccctggtctgattgtctgatcatgctgataagtactcccttcatctaaaatcataagaaatatttcttttactaaaaaaatcaacttatccctatataacaaaactaaagaaatatatgtacgtatgcaatcaataaattacttggattctagtcaacaattaactttgcatatgaagattataaatatgaccatcttttcagaaaatcaaaaaaaatatatacttaacacttttagatagaatgagtattagtgagagtattaggtgcttgccacgatggccatggagatggtcttgacgacgagaggaacgagcgatctggtttgccgcacgctacgttttttcaagaacaagaagtagtcgttaaccccgaattcgcccacgaaaaagagggatcccccaaagaattcctcgcattctgcagcacgcttggcgtgccatcctcatccgtgctctaatctctcaataatcccggttgattagcatgtactaatgcgacacagagtggttaaattaattaaccttgggccgtgccgcacagcgagggcatcagcgactcgaaccacgcgagctgcacgtcgaggctggtgttgagggggaacttgctgccggcgccggggatgtccctgtcgtggaagaagccggcgtccagcgcggtggcgccggcgacggcgaagttggcgccgccgccgaagctgccgccgtgagccaggtacggcggcacgaacggcagaccgaggccggcagctgcagtcaggcaggcggattgatcactcactcaagcaaagttcagtgatggataccctattcgacggcggcgatgggcggcggcggcgacgttaccgatgaggtcgaggatgagccggccgtcgctgctgcggccggtggggtggccgaagaaggtctcgccgtagggaggacgcatgacgttggaggggagggggtaccacgcgtaggccaccggcttgttgccggtgtcggcgaaggagtcgccgaagttgaagatggagtggtagcgccggtggccgccggcggagagggaggccgacgcggccgccgccgccgccgcggcctccgacgacgcgagcagcagcagcaggtgcagcgacgtggcggcgcacggcaagtagctgcccatcttgactgacacagtgacactgcaccggcggct
More
|
||||||||||
| CDS seq | atgggcagctacttgccgtgcgccgccacgtcgctgcacctgctgctgctgctcgcgtcgtcggaggccgcggcggcggcggcggccgcgtcggcctccctctccgccggcggccaccggcgctaccactccatcttcaacttcggcgactccttcgccgacaccggcaacaagccggtggcctacgcgtggtaccccctcccctccaacgtcatgcgtcctccctacggcgagaccttcttcggccaccccaccggccgcagcagcgacggccggctcatcctcgacctcatcgctgccggcctcggtctgccgttcgtgccgccgtacctggctcacggcggcagcttcggcggcggcgccaacttcgccgtcgccggcgccaccgcgctggacgccggcttcttccacgacagggacatccccggcgccggcagcaagttccccctcaacaccagcctcgacgtgcagctcgcgtggttcgagtcgctgatgccctcgctgtgcggcacggcccaaggatggcacgccaagcgtgctgcagaatgcgaggaattctttgggggatccctctttttcgtgggcgaattcggggttaacgactacttcttgttcttgaaaaaacgtagcgtgcggcaaaccagatcgctcaggctgatgaagcacggggcgaagagcatcgtggtccccgggatgatcccgtcaggctgctcgccgccggcgctgacgtcgttctacggccgcgccggcccggcggactacgacgcgcggacggggtgcctgagagggatcaacgagctagcgtcccaccacaactcgctgctgcaagacgcgctgcacgagctccggtgttgccaatatgattcagaatatcgatcaagtttgatcgatcgatcggtgtga
More
|
||||||||||
| Protein seq | MGSYLPCAATSLHLLLLLASSEAAAAAAAASASLSAGGHRRYHSIFNFGDSFADTGNKPVAYAWYPLPSNVMRPPYGETFFGHPTGRSSDGRLILDLIAAGLGLPFVPPYLAHGGSFGGGANFAVAGATALDAGFFHDRDIPGAGSKFPLNTSLDVQLAWFESLMPSLCGTAQGWHAKRAAECEEFFGGSLFFVGEFGVNDYFLFLKKRSVRQTRSLRLMKHGAKSIVVPGMIPSGCSPPALTSFYGRAGPADYDARTGCLRGINELASHHNSLLQDALHELRCCQYDSEYRSSLIDRSV |
||||||||||
| Function | Sinapine esterase [UniProtKB/Swiss-Prot:Q3ZFI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0008520 | OsKeNa_01g0008520.01 | Chr01 | 6764234 | 6765672 | - | NAM | ||
| CDS seq | atgggcagctacttgccgtgcgccgccacgtcgctgcacctgctgctgctgctcgcgtcgtcggaggccgcggcggcggcggcggccgcgtcggcctccctctccgccggcggccaccggcgctaccactccatcttcaacttcggcgactccttcgccgacaccggcaacaagccggtggcctacgcgtggtaccccctcccctccaacgtcatgcgtcctccctacggcgagaccttcttcggccaccccaccggccgcagcagcgacggccggctcatcctcgacctcatcgctgccggcctcggtctgccgttcgtgccgccgtacctggctcacggcggcagcttcggcggcggcgccaacttcgccgtcgccggcgccaccgcgctggacgccggcttcttccacgacagggacatccccggcgccggcagcaagttccccctcaacaccagcctcgacgtgcagctcgcgtggttcgagtcgctgatgccctcgctgtgcggcacggcccaaggatggcacgccaagcgtgctgcagaatgcgaggaattctttgggggatccctctttttcgtgggcgaattcggggttaacgactacttcttgttcttgaaaaaacgtagcgtgcggcaaaccagatcgctcaggctgatgaagcacggggcgaagagcatcgtggtccccgggatgatcccgtcaggctgctcgccgccggcgctgacgtcgttctacggccgcgccggcccggcggactacgacgcgcggacggggtgcctgagagggatcaacgagctagcgtcccaccacaactcgctgctgcaagacgcgctgcacgagctccggtgttgccaatatgattcagaatatcgatcaagtttgatcgatcgatcggtgtga
More
|
|||||||
| Protein seq | MGSYLPCAATSLHLLLLLASSEAAAAAAAASASLSAGGHRRYHSIFNFGDSFADTGNKPVAYAWYPLPSNVMRPPYGETFFGHPTGRSSDGRLILDLIAAGLGLPFVPPYLAHGGSFGGGANFAVAGATALDAGFFHDRDIPGAGSKFPLNTSLDVQLAWFESLMPSLCGTAQGWHAKRAAECEEFFGGSLFFVGEFGVNDYFLFLKKRSVRQTRSLRLMKHGAKSIVVPGMIPSGCSPPALTSFYGRAGPADYDARTGCLRGINELASHHNSLLQDALHELRCCQYDSEYRSSLIDRSV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0008520 | OsKeNa_01g0008520.02 | Chr01 | 6764226 | 6765705 | - | IsoSeq | ||
| CDS seq | ccgccggtgcagtgtcactgtgtcagtcaagatgggcagctacttgccgtgcgccgccacgtcgctgcacctgctgctgctgctcgcgtcgtcggaggccgcggcggcggcggcggccgcgtcggcctccctctccgccggcggccaccggcgctaccactccatcttcaacttcggcgactccttcgccgacaccggcaacaagccggtggcctacgcgtggtaccccctcccctccaacgtcatgcgtcctccctacggcgagaccttcttcggccaccccaccggccgcagcagcgacggccggctcatcctcgacctcatcgctgccggcctcggtctgccgttcgtgccgccgtacctggctcacggcggcagcttcggcggcggcgccaacttcgccgtcgccggcgccaccgcgctggacgccggcttcttccacgacagggacatccccggcgccggcagcaagttccccctcaacaccagcctcgacgtgcagctcgcgtggttcgagtcgctgatgccctcgctgtgcggcacggcccaaga
More
|
|||||||
| Protein seq | PPVQCHCVSQDGQLLAVRRHVAAPAAAARVVGGRGGGGGRVGLPLRRRPPALPLHLQLRRLLRRHRQQAGGLRVVPPPLQRHASSLRRDLLRPPHRPQQRRPAHPRPHRCRPRSAVRAAVPGSRRQLRRRRQLRRRRRHRAGRRLLPRQGHPRRRQQVPPQHQPRRAARVVRVADALAVRHGPR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr01 | 6764485 | 6765057 | - | OsKeNa_01g0008520.01 | OsKeNa_01g0008520.01,OsKeNa_01g0008520.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.391126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0223000 | SBH | 0.204647 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12381 | RBH | 0.0 | 0.184042 | 0.165419 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0223500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008870 | RBH | 0.0 | 7.721184 | 1.358363 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008470 | RBH | 0.720077 | 1.507021 | 5.397151 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008900 | RBH | 0.330842 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008420 | RBH | 0.000000 | 0.102645 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008500 | RBH | 0.0 | 2.521515 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0110900 | RBH | 0.986562 | 12.9598545 | 0.8320295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008440 | RBH | 0.010586 | 0.483317 | 0.656057 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0103900 | SBH | 0.027279 | 0.023326 | 0.003999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008500 | RBH | 0.000000 | 4.538499 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008440 | SBH | 3.783655 | 5.241076 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008520 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008350 | RBH | 0.303749 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008520 | RBH | 0.0 | 0.848794 | 0.775801 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008380 | RBH | 0.0 | 0.000000 | 0.0 |
