Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0008440 | OGI:01021330 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:6704233-6704496 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagaagtaggggaagcgcgccctcatcaccgccggcgacgagccggactcctggcagagcgcgtcgagcttccacgcgggcagggacacgacggcggcctcatggcggctcaggctctccttgccggcgccgctcgccagggacggcgagcccgggctgatgggctccttgttcgccgccttcaccgcatcaacggcggcggcggcgccgccgcctgccgccggcacgacggttatctccggtcgccggctcttgccttccat |
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| CDS seq | atggaaggcaagagccggcgaccggagataaccgtcgtgccggcggcaggcggcggcgccgccgccgccgttgatgcggtgaaggcggcgaacaaggagcccatcagcccgggctcgccgtccctggcgagcggcgccggcaaggagagcctgagccgccatgaggccgccgtcgtgtccctgcccgcgtggaagctcgacgcgctctgccaggagtccggctcgtcgccggcggtgatgagggcgcgcttcccctacttctga |
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| Protein seq | MEGKSRRPEITVVPAAGGGAAAAVDAVKAANKEPISPGSPSLASGAGKESLSRHEAAVVSLPAWKLDALCQESGSSPAVMRARFPYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0008440 | OsKeNa_01g0008440.01 | Chr01 | 6704233 | 6704496 | - | NAM | ||
| CDS seq | atggaaggcaagagccggcgaccggagataaccgtcgtgccggcggcaggcggcggcgccgccgccgccgttgatgcggtgaaggcggcgaacaaggagcccatcagcccgggctcgccgtccctggcgagcggcgccggcaaggagagcctgagccgccatgaggccgccgtcgtgtccctgcccgcgtggaagctcgacgcgctctgccaggagtccggctcgtcgccggcggtgatgagggcgcgcttcccctacttctga
More
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| Protein seq | MEGKSRRPEITVVPAAGGGAAAAVDAVKAANKEPISPGSPSLASGAGKESLSRHEAAVVSLPAWKLDALCQESGSSPAVMRARFPYF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.481777 | 0.431630 | 1.464594 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0222600 | RBH | 3.051797 | 1.341297 | 6.919121 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12270 | RBH | 2.542972 | 1.565112 | 1.506626 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0222600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008800 | RBH | 24.690529 | 29.424744 | 5.751204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007590 | RBH | 0.0 | 1.460281 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008830 | RBH | 50.070786 | 16.358559 | 6.153602 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008340 | RBH | 10.789890 | 0.586699 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008430 | RBH | 55.737232 | 11.997131 | 37.867771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0110300 | RBH | 5.4977645 | 5.6660285 | 2.7631235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008400 | RBH | 7.604233 | 3.403981 | 1.541180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0109700 | RBH | 169.9727705 | 83.60117 | 3.6170955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008950 | RBH | 0.266006 | 0.230131 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008430 | RBH | 2.367970 | 8.184632 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008410 | RBH | 106.812752 | 4.118269 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008450 | RBH | 25.810368 | 3.670976 | 5.090549 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008320 | RBH | 8.722777 | 11.521739 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008440 | RBH | 14.970832 | 0.0 | 3.809774 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008310 | RBH | 53.939819 | 98.717194 | 11.361020 |
