Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0005950 | OGI:01015610 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:4435915-4436592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgatgacctgtcgaagaaacctcagcgggagcaggacggcgacaacgcgctgctcccgtgcgtcatcgcgggcttcctcgtcgccggccacgtcgccgcgtgcacctaccgcgcggcggcggaaccgcgtgacctcgccttcgtcgccgccgcgtacaccatgctcgcgctgctcctctactgcgtcggcaggttcgaggcgctcgccgccgacggctcctctccggccgccgccgtggcgagggagcggctgaggctgcccgtctgggcgctctcgacggcgctgaccgtcctcttctcgtcgcgcgtcgcgccgatgatgccgccgccgctgaacgcgctcgtcgtggccatgtcggtggtcgtcaccgtcggtggcttctgcttgctgttcctcggcaatgcaggggaagacgacgtcgacgacgacgacgacgaggacgaggcagcttctgatcaggatgaggaagtctgattcaaccacattttcgaactgtcctttgtaattacaggaagaaacgatcgaataatcaatatcaacgtttgacaatcgtgtgtgtataagaatctgaacaactaattaagttcgcgttgcagtagctgtttgctagtagtttctatgtgtaaatttttttctagtttaggtgtgcaagcactttggttactgcggtag
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| CDS seq | atggacgatgacctgtcgaagaaacctcagcgggagcaggacggcgacaacgcgctgctcccgtgcgtcatcgcgggcttcctcgtcgccggccacgtcgccgcgtgcacctaccgcgcggcggcggaaccgcgtgacctcgccttcgtcgccgccgcgtacaccatgctcgcgctgctcctctactgcgtcggcaggttcgaggcgctcgccgccgacggctcctctccggccgccgccgtggcgagggagcggctgaggctgcccgtctgggcgctctcgacggcgctgaccgtcctcttctcgtcgcgcgtcgcgccgatgatgccgccgccgctgaacgcgctcgtcgtggccattttaggtgtgcaagcactttggttactgcggtag |
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| Protein seq | MDDDLSKKPQREQDGDNALLPCVIAGFLVAGHVAACTYRAAAEPRDLAFVAAAYTMLALLLYCVGRFEALAADGSSPAAAVARERLRLPVWALSTALTVLFSSRVAPMMPPPLNALVVAILGVQALWLLR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0005950 | OsKeNa_01g0005950.01 | Chr01 | 4435915 | 4436592 | + | NAM | ||
| CDS seq | atggacgatgacctgtcgaagaaacctcagcgggagcaggacggcgacaacgcgctgctcccgtgcgtcatcgcgggcttcctcgtcgccggccacgtcgccgcgtgcacctaccgcgcggcggcggaaccgcgtgacctcgccttcgtcgccgccgcgtacaccatgctcgcgctgctcctctactgcgtcggcaggttcgaggcgctcgccgccgacggctcctctccggccgccgccgtggcgagggagcggctgaggctgcccgtctgggcgctctcgacggcgctgaccgtcctcttctcgtcgcgcgtcgcgccgatgatgccgccgccgctgaacgcgctcgtcgtggccattttaggtgtgcaagcactttggttactgcggtag
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| Protein seq | MDDDLSKKPQREQDGDNALLPCVIAGFLVAGHVAACTYRAAAEPRDLAFVAAAYTMLALLLYCVGRFEALAADGSSPAAAVARERLRLPVWALSTALTVLFSSRVAPMMPPPLNALVVAILGVQALWLLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0183850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0183850 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005550 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005830 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006020 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0076600 | RBH | 0.1153075 | 0.3856075 | 0.035461 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0077000 | RBH | 0.670409 | 5.720989 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005980 | RBH | 0.0 | 0.510101 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005940 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005990 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005870 | RBH | 0.0 | 0.0 | 0.0 |
