Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0003620 | OGI:01008950 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:2814561-2815292 | ||||||||
| Gene Symbol | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59, H2B, - | ||||||||||
| DNA seq | gaacaccacaaacaagaaatcgaacaatcacaaaacaggaagcacatagaagtctagaagagcatcgttaatatctcagataaataagcaacagtttaccaaaagcagcgccacaaccgccaactacacactaataagacatccatttctaccactaccagatagtagacagaactaaatactaccaatagatggaatctaagcggaggtgaacttggtcacagccttggtgccctcggagacggcgtgcttggcgagctcgccggggaggacgaggcggacggaggtctggatctcccgtgaggtgatggtgggcttcttgttgtagcgcgcgagcttggcggactccccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgcttgagcaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttccgccccgccttcttcccctcgccgctgctcttctcggccttgccggcggggagacgcttctccgccttgggcttcttccccgccggggccttctcggccttctccgccgcgggctcctcctccgcgggcttcttcgccgccggcttcttctccgccttgggcgccatggatgccgctctcttcttctcggggaagggaaaggggagacgaaaatttgggggaattcggttgcgagttgt
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| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcgtctccccgccggcaaggccgagaagagcagcggcgaggggaagaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcgcgctacaacaagaagcccaccatcacctcacgggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtgaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Function | Histone H2B.10 [UniProtKB/Swiss-Prot:A2WKS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0003620 | OsKeNa_01g0003620.01 | Chr01 | 2814561 | 2815292 | - | NAM | ||
| CDS seq | atggcgcccaaggcggagaagaagccggcggcgaagaagcccgcggaggaggagcccgcggcggagaaggccgagaaggccccggcggggaagaagcccaaggcggagaagcgtctccccgccggcaaggccgagaagagcagcggcgaggggaagaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgccggggagtccgccaagctcgcgcgctacaacaagaagcccaccatcacctcacgggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggctgtgaccaagttcacctccgcttag
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| Protein seq | MAPKAEKKPAAKKPAEEEPAAEKAEKAPAGKKPKAEKRLPAGKAEKSSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0003620 | OsKeNa_01g0003620.02 | Chr01 | 2814602 | 2815292 | - | IsoSeq | ||
| CDS seq | caactcgcaaccgaattcccccaaattttcgtctcccctttcccttccccgagaagaagagagcggcatccatggcgcccaaggccgagaagagcagcggcgaggggaagaaggcggggcggaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagcaggtccaccccgacatcggcatctcctccaaggccatgtcca
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| Protein seq | QLATEFPQIFVSPFPSPRRRERHPWRPRPRRAAARGRRRGGRRRRRASRPTRSTSSRCSSRSTPTSASPPRPCP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.175499 | 13.820564 | 4.651459 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0149600 | SBH | 5.248086 | 4.997123 | 7.347138 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05610 | SBH | 3.535574 | 3.111513 | 2.522788 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0149600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003580 | SBH | 3.271499 | 47.005573 | 5.982422 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003410 | SBH | 0.0 | 17.981133 | 3.125675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003560 | SBH | 3.093734 | 22.794474 | 10.737349 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003220 | SBH | 0.218160 | 1.529602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003690 | RBH | 0.000000 | 12.232856 | 19.723804 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0048400 | RBH | 9.503719 | 5.8594755 | 23.4025735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003620 | RBH | 0.057617 | 2.290173 | 0.839543 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0049600 | RBH | 21.4850815 | 16.116412 | 133.229111 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003190 | SBH | 0.179317 | 0.734154 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003290 | SBH | 1.511812 | 63.128193 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003420 | SBH | 0.0 | 32.480698 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003670 | RBH | 0.125562 | 1.788290 | 2.192862 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003340 | SBH | 0.789545 | 25.894642 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003740 | SBH | 0.519781 | 4.854779 | 3.090059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003350 | SBH | 2.745276 | 33.987495 | 5.741957 |
