Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_01g0002300 | OGI:01006180 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr01:1786941-1789158 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacaagccaaacgcgaggtcaagctcgaacaaaagaaacgcatagggagcagcatgcctcgcaacagcggcggcggcgccagcgccattctgctgccgctcttcttgtcggcactgctgcttcgatgcttcgtgtgttatgccgacggcggcggcggcggctcgctggacgccgacgtcgcggcgctgtcggacttccggctggccgccgaccggtcaggcgcgctggcgagctgggacctggcagccaacccagcgccgtgcgggacgtggcggggtgtcagctgcgcgggtgggcgggtgacgaggctggtgctcgagggtttcggcctgtccggcgacgccgcgctcccggcgctcgcgaggcttgacggcctccgcgtgcttagtctcaaggggaacggcctcaccggcgccattcccgacctctcgccgctcgcggggctcaagctgctgttcctcgccggcaactcgctgtccggcccgataccgccgtcgattggggcgctgtaccggctgtatcgcctcgacctgtcgttcaacaacttgtccggcgtcgtgccaccggagctcaaccggctcgacaggttgctcacgctgcggctggactccaaccggctcagcggcgggattgacggcattgcgctccccgtgctgcaagacttcaatgtctccaacaatcttttgacggggaggattccggtggcgatggccaagtttccggttggggcgttcggcgggaatgctggtctctgcagcgcgccgctgccgtcgtgcaaggacgaggcgcagcagccgaacgcgtcggcggctgtcaacgcgtccgcgacgccgccgtgcccaccggctgcggccatggtggcgtcgtcgccgtcagcgaagccagcgggcgcggcaaccagcggcaagggaaagatgagctgcgcggccgtggtggcaattgtggccggggacttcgccgtggtcgggctcgtggccgggctgctgttctgctacttctggccacgcctctccggccggcgaagcgccaggcgtctccgggaaggggagaagatcgtgtactcctccagcccctatggcgccaccggagtggtcactgcagctggcggcacgtttgagcgggggaaaatggtgtttctggaggacgtcagcagcggcggcgggaagcggtttgagctcgacgacctgctgcgcgcatcagcagagatgctcggcaagggcgggtgcggcacggcgtacaaggccgtgcttggcgacggcagcgtcgtggccgtcaagcggctgcgcgacgccacggcggcggcggcgtccaagaaggatttcgagcaccacatggccgtgcttggccgtctccgtcacccgaacatcgtgccactcaacgcctactactacgcccgcgacgagaagctgctcgtctacgagttcatgcccaacggcagcctcttctccctcctgcacggtgagttctctaattgttgcatctcgacattgatttcgtcgaacacctgttgctgaaacatgttattacaggtaaccgtggccctgggcgcacgccgctggactgggcggcgcggatgcgcatcgcctccgccgccgcgcgcggcctagcatacatccaccacgcgagccgccggggcagcgggacgccgaggctggcgcacggcaacatcaagagcacgaacatactgctcgacaaagccggcgtggggcggctcgcggactgcggcctggcgcagctgggctcgtccccggcggccgccgcggcgcgctcggcggggtaccgcgcccccgaggcgcccccgccgccgcggccgtgggcgtcgcagaagggcgacgtgtacgcgttcggcgtggtgctactcgagctgctgacggggcggtgcccgggcagcgagcttcccaacggcggcgtggtggtggagctgccgcggtgggtgcagtcggtggtgagggaggagtggacgtcggaggtgttcgacctggagctgatgaaggacaagggcatcgaggaggagatggtggcgatgctgcagctcgccctgagctgcgcgtcggcggcgcccgaccagcggccgaagatcgggtacgtggtgaagatgatcgaggagatccgcgcgtgcggggaggcgtcgccgtcgcacgagtcgatggacgagtcctccggcgtgtccgtgtccgactcgcccgccgtgtcagaaggtggcgccattagccagtga
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| CDS seq | atgcctcgcaacagcggcggcggcgccagcgccattctgctgccgctcttcttgtcggcactgctgcttcgatgcttcgtgtgttatgccgacggcggcggcggcggctcgctggacgccgacgtcgcggcgctgtcggacttccggctggccgccgaccggtcaggcgcgctggcgagctgggacctggcagccaacccagcgccgtgcgggacgtggcggggtgtcagctgcgcgggtgggcgggtgacgaggctggtgctcgagggtttcggcctgtccggcgacgccgcgctcccggcgctcgcgaggcttgacggcctccgcgtgcttagtctcaaggggaacggcctcaccggcgccattcccgacctctcgccgctcgcggggctcaagctgctgttcctcgccggcaactcgctgtccggcccgataccgccgtcgattggggcgctgtaccggctgtatcgcctcgacctgtcgttcaacaacttgtccggcgtcgtgccaccggagctcaaccggctcgacaggttgctcacgctgcggctggactccaaccggctcagcggcgggattgacggcattgcgctccccgtgctgcaagacttcaatgtctccaacaatcttttgacggggaggattccggtggcgatggccaagtttccggttggggcgttcggcgggaatgctggtctctgcagcgcgccgctgccgtcgtgcaaggacgaggcgcagcagccgaacgcgtcggcggctgtcaacgcgtccgcgacgccgccgtgcccaccggctgcggccatggtggcgtcgtcgccgtcagcgaagccagcgggcgcggcaaccagcggcaagggaaagatgagctgcgcggccgtggtggcaattgtggccggggacttcgccgtggtcgggctcgtggccgggctgctgttctgctacttctggccacgcctctccggccggcgaagcgccaggcgtctccgggaaggggagaagatcgtgtactcctccagcccctatggcgccaccggagtggtcactgcagctggcggcacgtttgagcgggggaaaatggtgtttctggaggacgtcagcagcggcggcgggaagcggtttgagctcgacgacctgctgcgcgcatcagcagagatgctcggcaagggcgggtgcggcacggcgtacaaggccgtgcttggcgacggcagcgtcgtggccgtcaagcggctgcgcgacgccacggcggcggcggcgtccaagaaggatttcgagcaccacatggccgtgcttggccgtctccgtcacccgaacatcgtgccactcaacgcctactactacgcccgcgacgagaagctgctcgtctacgagttcatgcccaacggcagcctcttctccctcctgcacggtaaccgtggccctgggcgcacgccgctggactgggcggcgcggatgcgcatcgcctccgccgccgcgcgcggcctagcatacatccaccacgcgagccgccggggcagcgggacgccgaggctggcgcacggcaacatcaagagcacgaacatactgctcgacaaagccggcgtggggcggctcgcggactgcggcctggcgcagctgggctcgtccccggcggccgccgcggcgcgctcggcggggtaccgcgcccccgaggcgcccccgccgccgcggccgtgggcgtcgcagaagggcgacgtgtacgcgttcggcgtggtgctactcgagctgctgacggggcggtgcccgggcagcgagcttcccaacggcggcgtggtggtggagctgccgcggtgggtgcagtcggtggtgagggaggagtggacgtcggaggtgttcgacctggagctgatgaaggacaagggcatcgaggaggagatggtggcgatgctgcagctcgccctgagctgcgcgtcggcggcgcccgaccagcggccgaagatcgggtacgtggtgaagatgatcgaggagatccgcgcgtgcggggaggcgtcgccgtcgcacgagtcgatggacgagtcctccggcgtgtccgtgtccgactcgcccgccgtgtcagaaggtggcgccattagccagtga
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| Protein seq | MPRNSGGGASAILLPLFLSALLLRCFVCYADGGGGGSLDADVAALSDFRLAADRSGALASWDLAANPAPCGTWRGVSCAGGRVTRLVLEGFGLSGDAALPALARLDGLRVLSLKGNGLTGAIPDLSPLAGLKLLFLAGNSLSGPIPPSIGALYRLYRLDLSFNNLSGVVPPELNRLDRLLTLRLDSNRLSGGIDGIALPVLQDFNVSNNLLTGRIPVAMAKFPVGAFGGNAGLCSAPLPSCKDEAQQPNASAAVNASATPPCPPAAAMVASSPSAKPAGAATSGKGKMSCAAVVAIVAGDFAVVGLVAGLLFCYFWPRLSGRRSARRLREGEKIVYSSSPYGATGVVTAAGGTFERGKMVFLEDVSSGGGKRFELDDLLRASAEMLGKGGCGTAYKAVLGDGSVVAVKRLRDATAAAASKKDFEHHMAVLGRLRHPNIVPLNAYYYARDEKLLVYEFMPNGSLFSLLHGNRGPGRTPLDWAARMRIASAAARGLAYIHHASRRGSGTPRLAHGNIKSTNILLDKAGVGRLADCGLAQLGSSPAAAAARSAGYRAPEAPPPPRPWASQKGDVYAFGVVLLELLTGRCPGSELPNGGVVVELPRWVQSVVREEWTSEVFDLELMKDKGIEEEMVAMLQLALSCASAAPDQRPKIGYVVKMIEEIRACGEASPSHESMDESSGVSVSDSPAVSEGGAISQ |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g68400 [UniProtKB/Swiss-Prot:Q9M9C5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_01g0002300 | OsKeNa_01g0002300.01 | Chr01 | 1786941 | 1789158 | + | NAM | ||
| CDS seq | atgcctcgcaacagcggcggcggcgccagcgccattctgctgccgctcttcttgtcggcactgctgcttcgatgcttcgtgtgttatgccgacggcggcggcggcggctcgctggacgccgacgtcgcggcgctgtcggacttccggctggccgccgaccggtcaggcgcgctggcgagctgggacctggcagccaacccagcgccgtgcgggacgtggcggggtgtcagctgcgcgggtgggcgggtgacgaggctggtgctcgagggtttcggcctgtccggcgacgccgcgctcccggcgctcgcgaggcttgacggcctccgcgtgcttagtctcaaggggaacggcctcaccggcgccattcccgacctctcgccgctcgcggggctcaagctgctgttcctcgccggcaactcgctgtccggcccgataccgccgtcgattggggcgctgtaccggctgtatcgcctcgacctgtcgttcaacaacttgtccggcgtcgtgccaccggagctcaaccggctcgacaggttgctcacgctgcggctggactccaaccggctcagcggcgggattgacggcattgcgctccccgtgctgcaagacttcaatgtctccaacaatcttttgacggggaggattccggtggcgatggccaagtttccggttggggcgttcggcgggaatgctggtctctgcagcgcgccgctgccgtcgtgcaaggacgaggcgcagcagccgaacgcgtcggcggctgtcaacgcgtccgcgacgccgccgtgcccaccggctgcggccatggtggcgtcgtcgccgtcagcgaagccagcgggcgcggcaaccagcggcaagggaaagatgagctgcgcggccgtggtggcaattgtggccggggacttcgccgtggtcgggctcgtggccgggctgctgttctgctacttctggccacgcctctccggccggcgaagcgccaggcgtctccgggaaggggagaagatcgtgtactcctccagcccctatggcgccaccggagtggtcactgcagctggcggcacgtttgagcgggggaaaatggtgtttctggaggacgtcagcagcggcggcgggaagcggtttgagctcgacgacctgctgcgcgcatcagcagagatgctcggcaagggcgggtgcggcacggcgtacaaggccgtgcttggcgacggcagcgtcgtggccgtcaagcggctgcgcgacgccacggcggcggcggcgtccaagaaggatttcgagcaccacatggccgtgcttggccgtctccgtcacccgaacatcgtgccactcaacgcctactactacgcccgcgacgagaagctgctcgtctacgagttcatgcccaacggcagcctcttctccctcctgcacggtaaccgtggccctgggcgcacgccgctggactgggcggcgcggatgcgcatcgcctccgccgccgcgcgcggcctagcatacatccaccacgcgagccgccggggcagcgggacgccgaggctggcgcacggcaacatcaagagcacgaacatactgctcgacaaagccggcgtggggcggctcgcggactgcggcctggcgcagctgggctcgtccccggcggccgccgcggcgcgctcggcggggtaccgcgcccccgaggcgcccccgccgccgcggccgtgggcgtcgcagaagggcgacgtgtacgcgttcggcgtggtgctactcgagctgctgacggggcggtgcccgggcagcgagcttcccaacggcggcgtggtggtggagctgccgcggtgggtgcagtcggtggtgagggaggagtggacgtcggaggtgttcgacctggagctgatgaaggacaagggcatcgaggaggagatggtggcgatgctgcagctcgccctgagctgcgcgtcggcggcgcccgaccagcggccgaagatcgggtacgtggtgaagatgatcgaggagatccgcgcgtgcggggaggcgtcgccgtcgcacgagtcgatggacgagtcctccggcgtgtccgtgtccgactcgcccgccgtgtcagaaggtggcgccattagccagtga
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| Protein seq | MPRNSGGGASAILLPLFLSALLLRCFVCYADGGGGGSLDADVAALSDFRLAADRSGALASWDLAANPAPCGTWRGVSCAGGRVTRLVLEGFGLSGDAALPALARLDGLRVLSLKGNGLTGAIPDLSPLAGLKLLFLAGNSLSGPIPPSIGALYRLYRLDLSFNNLSGVVPPELNRLDRLLTLRLDSNRLSGGIDGIALPVLQDFNVSNNLLTGRIPVAMAKFPVGAFGGNAGLCSAPLPSCKDEAQQPNASAAVNASATPPCPPAAAMVASSPSAKPAGAATSGKGKMSCAAVVAIVAGDFAVVGLVAGLLFCYFWPRLSGRRSARRLREGEKIVYSSSPYGATGVVTAAGGTFERGKMVFLEDVSSGGGKRFELDDLLRASAEMLGKGGCGTAYKAVLGDGSVVAVKRLRDATAAAASKKDFEHHMAVLGRLRHPNIVPLNAYYYARDEKLLVYEFMPNGSLFSLLHGNRGPGRTPLDWAARMRIASAAARGLAYIHHASRRGSGTPRLAHGNIKSTNILLDKAGVGRLADCGLAQLGSSPAAAAARSAGYRAPEAPPPPRPWASQKGDVYAFGVVLLELLTGRCPGSELPNGGVVVELPRWVQSVVREEWTSEVFDLELMKDKGIEEEMVAMLQLALSCASAAPDQRPKIGYVVKMIEEIRACGEASPSHESMDESSGVSVSDSPAVSEGGAISQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.436116 | 0.148598 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0819100 | SBH | 0.0 | 0.0 | 3.965886 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04230 | RBH | 0.0 | 0.141274 | 0.064432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0133900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002410 | RBH | 0.0 | 1.011847 | 0.542260 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002470 | RBH | 0.0 | 1.851716 | 0.274047 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002320 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002340 | RBH | 0.0 | 0.0 | 1.129956 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0030800 | RBH | 4.531923 | 2.666049 | 26.941824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002370 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0031500 | RBH | 6.0955045 | 0.6345975 | 14.024069 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002170 | RBH | 0.034404 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002340 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002450 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002320 | RBH | 0.0 | 2.270821 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002490 | RBH | 0.0 | 0.369363 | 1.104712 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002370 | RBH | 0.0 | 0.0 | 0.0 |
