Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_12g0009640 | OGI:12028970 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr12:10436928-10439329 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGGCCACACCAGCGCCCCGATGGCTTCCCCCCTCGCCGTCTTCCACCCCGCCTCCGCCACCGCCGCCGCCGCCGCTCGCCGTCACCACCCCCCGCGCCCGCCGCCCCTGCACCTCCACCTCCCGCTCCACCACCAGCCTTCGTCGCCCCGCCGCAGGTTCGCTGCCGAGGTACTCCCGAACCCCTGTACTCAACCCTCGTATCCTCCGTGAAATGGACGAGCGGCTTTCCGAGTGTGACGCGTTCCGTTCTAGGACCCCGCAGTTCGCGGTCGGCGGTGCTGACGGTGGCACCGGCGGCGGCGGCGGGAGGAGGGCGAGGGGAGGCGGCGGTGGCGTCGACGTCGCCGCGGTCGGCGCGGCGCTGCGGGACGCCAGGACGGCCGACGAAGTGGAGACCCTGGTGAAGGGCTTCCTGGACGACGGTGGCGGCGGCGAGGAGCACCTGCCGCTCCAGGTGTACACCTCGGTGATCCGGGGGCTGGGCAAGGAGAGGCGCCTCGACGCCGCGTTCGCCGTCGTGGAGCACCTCAAGAGGGGAAGCGGGAGCGGCGGCGGCGTCAACCAGTTCGTGTACAACTGTCTTCTGGGCGCGGTCAAGAACAGTGGGGAATTTGGGAGGATCCACGACGTGCTTGCAGACATGGAGGCACAGGGAATTCCCCCAAATGTCGTGACATTCAACACTCTGATGTCAATCTATGTCGAACAAGGCAAGATTGATGAGGTCTTCAGGGTGTTTGACACCATCGAGGGCAGTGGGCTGGTGCCCACCGCGGCGACATACTCGACAGTGATGTCGTCCTACAAGAAGGCTGGCGATGCGTTCGCGGCGCTCAAGTTCCTCACCAAGCTAAGGGAGATGTACAACAAGGGTGAATTGGCAGGGAATCGTGAAGATTGGGACCGAGAATTTGTCAAGTTTGAGAAGCTGACTGTCCGTGTCTGCTATATGGCGATGCGGCGGTCTCTTGTGGGTGGTGAGAATCCAGTAGGTGAGGTGCTGAAAGTTCTTCTTGGCATGGATGAAGCTGGGGTGAAGCCAGACAGGAGAGATTACGAGCGGCTTGTGTGGGCATGTACAGGTGAGGAACATTACACCATTGCCAAGGAGCTGTACCAAAGGATCCGTGAGCGTGGTGATGGCGTGATCAGCTTATCTGTGTGCAATCATCTGATTTGGCTGATGGGCAAGGCTAAGAAGTGGTGGGCAGCTCTTGAGATTTATGAGGATTTGTTGGACAAAGGCCCCAAACCGAATAACTTGTCGTATGAGCTGATCATGTCACATTTCAATATTCTACTCAATGCTGCAAAGAGAAGGGGCATTTGGAGGTGGGGTGTAAGGCTGCTTGATAAGATGCAACAGAAGGGCTTGAAGCCTGGAAGCAGAGAGTGGAATGCCGTCCTTCTTGCGTGTTCTAGAGCAGCTGAAACATCTGCTGCAGTGGATATATTTAAGAGAATGATAGATCAAGGGTTGACACCGGATGTAGTTTCTTACGGAGCGCTGTTGAGTGCGCTTGAGAAGGGAAAGCTGTATGATGAGGCACTCCGAGTTTGGGAACACATGTGCAAGGTAGGCGTTAAGCCAAACCTACATGCATATACAATCTTAGTATCAATTTACATTGGCAAGGGGAACCATGCTATGGTAGATTCTGTTCTTCGTGGTATGCTGTCAGCAAAGGTAGAACCAACTGTTGTAACGTTCAATGCGATAATCAGTGCATGCGTGAGAAACAATAAGGGTGGCTCTGCTTTTGAATGGTTCCATAGGATGAAAGTGCAGAACATTGAGCCAAATGAAATTACATATCAGATGTTGATTGAAGCTCTTGTACAAGATGGTAAACCCAGGCTTGCCTATGAGATGTACATGAGGGCTTGCAACCAAGGGCTTGAGCTTCCTGCAAAATCATATGACACTGTAATGGAGGCATGCCAAGATTATGGTTCCCTCATAGATCTAAATTCTTTGGGTCCTCGGCCTGTTAAGAAAGTGGAACCCATCAGGATAGAGAACAAGTTTTCAAGTAGTTATTATGTTGGGGATTTTCCCAGCAGCACAAAACATTTTGGTAGCACTGGAACATCTAATTTATATAGATACAGAACGGAAAGGTGGATCATGTAGCATTCGGCCCCCACTTTTTTCTGAACACTTCAAACTCACTCCAAGTCTCCAACATTGAGAACACACTGATATTTGTTTGTAAGTTGCCTAACTTGTAAACATTCAATCATTTATACAGTAGTGAATTTGTTATTTGCTTTATACGGAGTAGAAAGTAGAAGGAGATTGCCTCATGGACTTAGAATTGTTTTTCCCATTTTGCTTATTTGAAATGCCTCCAATTGTTTGCATTAATCTTCTTCAAATAGACCCACTTTGCATATGAAT
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| CDS seq | ATGGAGGCACAGGGAATTCCCCCAAATGTCGTGACATTCAACACTCTGATGTCAATCTATGTCGAACAAGGCAAGATTGATGAGGTCTTCAGGGTGTTTGACACCATCGAGGGCAGTGGGCTGGTGCCCACCGCGGCGACATACTCGACAGTGATGTCGTCCTACAAGAAGGCTGGCGATGCGTTCGCGGCGCTCAAGTTCCTCACCAAGCTAAGGGAGATGTACAACAAGGGTGAATTGGCAGGGAATCGTGAAGATTGGGACCGAGAATTTGTCAAGTTTGAGAAGCTGACTGTCCGTGTCTGCTATATGGCGATGCGGCGGTCTCTTGTGGGTGGTGAGAATCCAGTAGGTGAGGTGCTGAAAGTTCTTCTTGGCATGGATGAAGCTGGGGTGAAGCCAGACAGGAGAGATTACGAGCGGCTTGTGTGGGCATGTACAGGTGAGGAACATTACACCATTGCCAAGGAGCTGTACCAAAGGATCCGTGAGCGTGGTGATGGCGTGATCAGCTTATCTGTGTGCAATCATCTGATTTGGCTGATGGGCAAGGCTAAGAAGTGGTGGGCAGCTCTTGAGATTTATGAGGATTTGTTGGACAAAGGCCCCAAACCGAATAACTTGTCGTATGAGCTGATCATGTCACATTTCAATATTCTACTCAATGCTGCAAAGAGAAGGGGCATTTGGAGGTGGGGTGTAAGGCTGCTTGATAAGATGCAACAGAAGGGCTTGAAGCCTGGAAGCAGAGAGTGGAATGCCGTCCTTCTTGCGTGTTCTAGAGCAGCTGAAACATCTGCTGCAGTGGATATATTTAAGAGAATGATAGATCAAGGGTTGACACCGGATGTAGTTTCTTACGGAGCGCTGTTGAGTGCGCTTGAGAAGGGAAAGCTGTATGATGAGGCACTCCGAGTTTGGGAACACATGTGCAAGGTAGGCGTTAAGCCAAACCTACATGCATATACAATCTTAGTATCAATTTACATTGGCAAGGGGAACCATGCTATGGTAGATTCTGTTCTTCGTGGTATGCTGTCAGCAAAGGTAGAACCAACTGTTGTAACGTTCAATGCGATAATCAGTGCATGCGTGAGAAACAATAAGGGTGGCTCTGCTTTTGAATGGTTCCATAGGATGAAAGTGCAGAACATTGAGCCAAATGAAATTACATATCAGATGTTGATTGAAGCTCTTGTACAAGATGGTAAACCCAGGCTTGCCTATGAGATGTACATGAGGGCTTGCAACCAAGGGCTTGAGCTTCCTGCAAAATCATATGACACTGTAATGGAGGCATGCCAAGATTATGGTTCCCTCATAGATCTAAATTCTTTGGGTCCTCGGCCTGTTAAGAAAGTGGAACCCATCAGGATAGAGAACAAGTTTTCAAGTAGTTATTATGTTGGGGATTTTCCCAGCAGCACAAAACATTTTGGTAGCACTGGAACATCTAATTTATATAGATACAGAACGGAAAGGTGGATCATGTAG
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| Protein seq | MEAQGIPPNVVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSSYKKAGDAFAALKFLTKLREMYNKGELAGNREDWDREFVKFEKLTVRVCYMAMRRSLVGGENPVGEVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKVEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLAYEMYMRACNQGLELPAKSYDTVMEACQDYGSLIDLNSLGPRPVKKVEPIRIENKFSSSYYVGDFPSSTKHFGSTGTSNLYRYRTERWIM |
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| Function | Protein LOW PHOTOSYNTHETIC EFFICIENCY 1, chloroplastic [UniProtKB/Swiss-Prot:Q9SNB7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_12g0009640 | OsKYG_12g0009640.01 | Chr12 | 10436928 | 10439329 | + | NAM | ||
| CDS seq | ATGGAGGCACAGGGAATTCCCCCAAATGTCGTGACATTCAACACTCTGATGTCAATCTATGTCGAACAAGGCAAGATTGATGAGGTCTTCAGGGTGTTTGACACCATCGAGGGCAGTGGGCTGGTGCCCACCGCGGCGACATACTCGACAGTGATGTCGTCCTACAAGAAGGCTGGCGATGCGTTCGCGGCGCTCAAGTTCCTCACCAAGCTAAGGGAGATGTACAACAAGGGTGAATTGGCAGGGAATCGTGAAGATTGGGACCGAGAATTTGTCAAGTTTGAGAAGCTGACTGTCCGTGTCTGCTATATGGCGATGCGGCGGTCTCTTGTGGGTGGTGAGAATCCAGTAGGTGAGGTGCTGAAAGTTCTTCTTGGCATGGATGAAGCTGGGGTGAAGCCAGACAGGAGAGATTACGAGCGGCTTGTGTGGGCATGTACAGGTGAGGAACATTACACCATTGCCAAGGAGCTGTACCAAAGGATCCGTGAGCGTGGTGATGGCGTGATCAGCTTATCTGTGTGCAATCATCTGATTTGGCTGATGGGCAAGGCTAAGAAGTGGTGGGCAGCTCTTGAGATTTATGAGGATTTGTTGGACAAAGGCCCCAAACCGAATAACTTGTCGTATGAGCTGATCATGTCACATTTCAATATTCTACTCAATGCTGCAAAGAGAAGGGGCATTTGGAGGTGGGGTGTAAGGCTGCTTGATAAGATGCAACAGAAGGGCTTGAAGCCTGGAAGCAGAGAGTGGAATGCCGTCCTTCTTGCGTGTTCTAGAGCAGCTGAAACATCTGCTGCAGTGGATATATTTAAGAGAATGATAGATCAAGGGTTGACACCGGATGTAGTTTCTTACGGAGCGCTGTTGAGTGCGCTTGAGAAGGGAAAGCTGTATGATGAGGCACTCCGAGTTTGGGAACACATGTGCAAGGTAGGCGTTAAGCCAAACCTACATGCATATACAATCTTAGTATCAATTTACATTGGCAAGGGGAACCATGCTATGGTAGATTCTGTTCTTCGTGGTATGCTGTCAGCAAAGGTAGAACCAACTGTTGTAACGTTCAATGCGATAATCAGTGCATGCGTGAGAAACAATAAGGGTGGCTCTGCTTTTGAATGGTTCCATAGGATGAAAGTGCAGAACATTGAGCCAAATGAAATTACATATCAGATGTTGATTGAAGCTCTTGTACAAGATGGTAAACCCAGGCTTGCCTATGAGATGTACATGAGGGCTTGCAACCAAGGGCTTGAGCTTCCTGCAAAATCATATGACACTGTAATGGAGGCATGCCAAGATTATGGTTCCCTCATAGATCTAAATTCTTTGGGTCCTCGGCCTGTTAAGAAAGTGGAACCCATCAGGATAGAGAACAAGTTTTCAAGTAGTTATTATGTTGGGGATTTTCCCAGCAGCACAAAACATTTTGGTAGCACTGGAACATCTAATTTATATAGATACAGAACGGAAAGGTGGATCATGTAG
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| Protein seq | MEAQGIPPNVVTFNTLMSIYVEQGKIDEVFRVFDTIEGSGLVPTAATYSTVMSSYKKAGDAFAALKFLTKLREMYNKGELAGNREDWDREFVKFEKLTVRVCYMAMRRSLVGGENPVGEVLKVLLGMDEAGVKPDRRDYERLVWACTGEEHYTIAKELYQRIRERGDGVISLSVCNHLIWLMGKAKKWWAALEIYEDLLDKGPKPNNLSYELIMSHFNILLNAAKRRGIWRWGVRLLDKMQQKGLKPGSREWNAVLLACSRAAETSAAVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEHMCKVGVKPNLHAYTILVSIYIGKGNHAMVDSVLRGMLSAKVEPTVVTFNAIISACVRNNKGGSAFEWFHRMKVQNIEPNEITYQMLIEALVQDGKPRLAYEMYMRACNQGLELPAKSYDTVMEACQDYGSLIDLNSLGPRPVKKVEPIRIENKFSSSYYVGDFPSSTKHFGSTGTSNLYRYRTERWIM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.507495 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0283900 | RBH | 1.671342 | 1.606144 | 2.049692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18640 | RBH | 1.094532 | 1.046128 | 0.510957 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0283900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009650 | RBH | 0.496394 | 4.327553 | 1.380800 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009840 | RBH | 0.292304 | 0.0 | 0.430005 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009780 | RBH | 1.284541 | 1.942887 | 2.594551 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009560 | RBH | 0.226672 | 0.025702 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009460 | RBH | 5.014493 | 4.508874 | 5.815795 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0149400 | RBH | 4.04144 | 3.48294 | 9.5329565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009470 | RBH | 0.321682 | 0.142652 | 0.370660 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0164400 | RBH | 9.0123935 | 5.212346 | 5.987502 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009380 | RBH | 0.091740 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009590 | RBH | 0.000000 | 8.178560 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009560 | RBH | 0.824893 | 0.0 | 0.466851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009660 | RBH | 0.087727 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009440 | RBH | 0.600361 | 0.000000 | 1.388981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009320 | RBH | 0.794741 | 8.276903 | 2.898360 |
