Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_12g0000110 | OGI:12000150 | 4/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr12:123997-125318 | ||||||||
| Gene Symbol | OsCCT40 | ||||||||||
| DNA seq | ATGCACCATTCGAGCCGGTCTTCGTCTTGGCATGGCATCATCAGCTCGCCGCCATTCCATTTCCTGCAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGTACCGGAGCAAGCGCAGCCACCGCAACTTCGGCAAGAGGATCACCGTAAGTATTTCATTACTACTGGTTGAGCAGTTCCATTACGTAGTGTATATTATTTGATAGAAAAACCTCCTAATATATATCTCAGATAATTGTGGACCTTTAGATTGCTTTAAGATTCGTGCCAACACCTTAAACCCTAACCCTTCTCCCTTCCTCCTCACTCCCACTGCCGCCGCCACTACCATTCCTCCTCCAATCCTCCCCCATCTCCTCCACTCACCTCGATGGCGCCGGTTGAACCTCCCCTCCTCCCCGCCTCTTCTTTTTCTCAAGCTGCTGGCGGTAAGGTGTCCCTATCTCGTCATATTTCTCGTTTTCGGTGGCTTCCCGCTATATGAAACACCACCACCGTCCCCATTTTCTAATGACTTGCTCCTCTTTGTCCTCACTAGCAACATTGGCCCACCACCCGCCACCGATCCCAGGCTTCAGCGGTGCCATCGCCGCCTTGTCAACGAGTTGCCACTTGGTACCTCCCACGGTCATCCCTTTAAGACCGGATCAGAATTTTATCCCTCTTCGCCCTCCCTCCACCCCTAACCTCATCTAGAAACCTAAACCCTAACTCGTTGGGTTAGTGTTAGTCATTAAAGTTTGTTGCTTGACCAGGCCCCGCCTATGCCCAAAGAGGAGGAGGCTTGGCACGAAATGTGAAGCATATCAGAAGGTTAGAAATGTGCAAGATTTTGGTCCTAATTTTTATTATAACATGATTTAGGAATTCCGTAATTAGTACTGCATTAAGTAATCTTAATTTTAACATTGCAAAGCTGATCATGTGTACGTGCATTAATATTTGGTATTCATTGATTAGTACGCTTGCCGGAAGAGGCTTGCGGACGAGAGGGCGAGGGTGAAGGGCCGCTTCGTCTCCAGCTCCGGCGGCAACGATAATATATAATGCACCTGCACATGAGCTGCCGCCGTCGCTTGTCAATCTCAGCAATGGTGGTGGTGGTGCTGCAATCATCCCAACAAGAAGTGTGCCAGAGTGGTGACCGGAAATGCAGGCGTCATTGGTCAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCATCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTCTAG
More
|
||||||||||
| CDS seq | ATGCACCATTCGAGCCGGTCTTCGTCTTGGCATGGCATCATCAGCTCGCCGCCATTCCATTTCCTGCAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCATCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTCTAG |
||||||||||
| Protein seq | MHHSSRSSSWHGIISSPPFHFLQLQGRYSAEERRERIERDEMCGGAGMNLHLCDANEMEQVAAYVGISSMDLCAYLHCSWPPV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_12g0000110 | OsKYG_12g0000110.01 | Chr12 | 123997 | 125318 | + | NAM | ||
| CDS seq | ATGCACCATTCGAGCCGGTCTTCGTCTTGGCATGGCATCATCAGCTCGCCGCCATTCCATTTCCTGCAGCTGCAGGGGAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGAAAGGGATGAGATGTGTGGCGGCGCGGGCATGAATCTCCACCTGTGCGACGCCAACGAGATGGAGCAGGTTGCTGCCTACGTTGGCATCTCCTCCATGGACCTCTGCGCCTACCTGCACTGCTCATGGCCGCCCGTCTAG
More
|
|||||||
| Protein seq | MHHSSRSSSWHGIISSPPFHFLQLQGRYSAEERRERIERDEMCGGAGMNLHLCDANEMEQVAAYVGISSMDLCAYLHCSWPPV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000090 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0001000 | SBH | 0 | 0.0263965 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000110 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000100 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000110 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000100 | RBH | 0.0 | 0.0 | 0.0 |
