Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_11g0013420 | OGI:11045580 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr11:17698887-17699602 | ||||||||
| Gene Symbol | SCP57, OsSCP57, OsSCP58, SCP58 | ||||||||||
| DNA seq | ATGAAAACTTATTGGCTATTCAATGCCAGCGATCCATATATATCATGTGTGCGCAATATTTACTGTTGCAGATACGTGGAGGTGAACGAGAGTACTGGCGTGCGCCTCTTCTACTACTTTGTTAAGTCAGAGAAGGATCCTGATGTAGACCCACTTTTACTGTGGCTATCAGGTGGGCCAGGATGTTCTAGTATCTCTGGCCTAACCCACGAGATAGGTAAATTAACTAGCAGGTTTTTTTTTCAAATTATTAAAAAGTTTACATTGAGTTCCTTCAGATAAACAATATATATTATATTATAAACCATGCTTATAGGTCATGTTACAATAAGGCTTGTTGTACTTAACAAATTGTTTATGTCCATATATTTATAGGGCCATTCCAATTCGCTGCAAAACGGTATTACAGTGGAGGATTGCCAGAAATTATCTACCGACCAGAGACTTGGACTAAGGTTGCCTACATTTTTTAATGAATGTGGCAACAAAGAAAATTATTTGTATCTCTGTCTCAAATGAAAAAAAAGGCATATGCCCTTATCCAGGTTTTAAGGGATGAACTTTGTATGGTTTTGCAGGTGAGCAACATAATCTTTGTGGATTCTCCTGTAGGGGCAGGGTTCTCATACGCGGCAACAATGGAAGGGTCCAAGTCTAGTGATACCAAGACAGTGAAACAGCTTTATATTTTCCTCATAAAGGTAACTCTGTGCTGA
More
|
||||||||||
| CDS seq | ATGAAAACTTATTGGCTATTCAATGCCAGCGATCCATATATATCATGTGTGCGCAATATTTACTGTTGCAGATACGTGGAGGTGAACGAGAGTACTGGCGTGCGCCTCTTCTACTACTTTGTTAAGTCAGAGAAGGATCCTGATGTAGACCCACTTTTACTGTGGCTATCAGGTGGGCCAGGATGTTCTAGTATCTCTGGCCTAACCCACGAGATAGGGCCATTCCAATTCGCTGCAAAACGGTATTACAGTGGAGGATTGCCAGAAATTATCTACCGACCAGAGACTTGGACTAAGGTGAGCAACATAATCTTTGTGGATTCTCCTGTAGGGGCAGGGTTCTCATACGCGGCAACAATGGAAGGGTCCAAGTCTAGTGATACCAAGACAGTGAAACAGCTTTATATTTTCCTCATAAAGGTAACTCTGTGCTGA
More
|
||||||||||
| Protein seq | MKTYWLFNASDPYISCVRNIYCCRYVEVNESTGVRLFYYFVKSEKDPDVDPLLLWLSGGPGCSSISGLTHEIGPFQFAAKRYYSGGLPEIIYRPETWTKVSNIIFVDSPVGAGFSYAATMEGSKSSDTKTVKQLYIFLIKVTLC |
||||||||||
| Function | Serine carboxypeptidase-like 13 [UniProtKB/Swiss-Prot:Q8H780] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_11g0013420 | OsKYG_11g0013420.01 | Chr11 | 17698887 | 17699602 | + | NAM | ||
| CDS seq | ATGAAAACTTATTGGCTATTCAATGCCAGCGATCCATATATATCATGTGTGCGCAATATTTACTGTTGCAGATACGTGGAGGTGAACGAGAGTACTGGCGTGCGCCTCTTCTACTACTTTGTTAAGTCAGAGAAGGATCCTGATGTAGACCCACTTTTACTGTGGCTATCAGGTGGGCCAGGATGTTCTAGTATCTCTGGCCTAACCCACGAGATAGGGCCATTCCAATTCGCTGCAAAACGGTATTACAGTGGAGGATTGCCAGAAATTATCTACCGACCAGAGACTTGGACTAAGGTGAGCAACATAATCTTTGTGGATTCTCCTGTAGGGGCAGGGTTCTCATACGCGGCAACAATGGAAGGGTCCAAGTCTAGTGATACCAAGACAGTGAAACAGCTTTATATTTTCCTCATAAAGGTAACTCTGTGCTGA
More
|
|||||||
| Protein seq | MKTYWLFNASDPYISCVRNIYCCRYVEVNESTGVRLFYYFVKSEKDPDVDPLLLWLSGGPGCSSISGLTHEIGPFQFAAKRYYSGGLPEIIYRPETWTKVSNIIFVDSPVGAGFSYAATMEGSKSSDTKTVKQLYIFLIKVTLC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0461000 | SBH | 1.093553 | 0.968793 | 4.674829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g27170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0461000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013350 | SBH | 0.508802 | 0.0 | 14.436690 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013290 | SBH | 0.0 | 0.0 | 1.414564 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013220 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013030 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0241300 | RBH | 0.21982 | 0.466186 | 0.0330005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013290 | SBH | 0.101687 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0257400 | SBH | 4.7071115 | 0 | 0.342257 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013470 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013080 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013220 | RBH | 0.0 | 0.0 | 0.0 |
