Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_06g0028340 | OGI:06083380 | 15/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr06:30943879-30947483 | ||||||||
| Gene Symbol | LIC, OsC3H46, C3H46, OsLIC, OsFLA6, OsLIC1 | ||||||||||
| DNA seq | GGCGGCCGCGTCTCGAGTTCTCGGCGGAGGCGGCAAGCCGGCGAGGGCAACCCACCCACCGACGTCGTGCGGCCGCGCTTGCTGCGTCGCGTGCCCACGCCAATCCCGTGGCGGCGGAAGGAGGAGGAGCAAGCGCTTGGGAGGAGCTAAACCCTAGAGGCGGAGCTCTAGAATCGAATCCCCCCTTCCTTCCGCTTTGCGGCGATGAGTCGGCGGCAGGAGATTTGCCGCAACTTCCAGCGCGGAAGGTACCGGATCCCCCCCCTCTctctctcatctctctcagtgagaactacgccatcgattgattacccagccattgattcgagtttttgatttgcaatgcttgtttctgaatgatgcgtgcagttgcaagtacggagcgcagtgcaggtatttgcatgcctcccctcaccagcaacagcagcagcagcagcagcaggcgaagcccaacccgtttggatttggcaccggaagcaggcagcagcagcagccgtcatttggctcacagttccagcagcagcaacagcagcagcagaagcccaatccTtttggttttggggtacaaggtgccaatgcccagtcacgtaatgctcctggtcctgcgaaggtttgtcagcgctaatcagaacaaaggaaattcttcaattgcagtgtttttccatgtataggaatgtgttctgtatgactaataaagaaattgttgaatcagccttttcaaaataagtgggtaagggacccctcGgccccgacgaagcaagcagaggcggtgcagccaccgcaggcgcaggctgcccacacgtgagtccatatgctatatgttttgcttttgatctcacctgattaatcttgggtatgggcgaatcaccaacatgtttgttttccagctcctgtgaagaccctcagtcatgcagacaacaaatttctgaggattttaagaacgaggctcctatttggaagcttacttgttatgctcatctcagaaagtaaataattcatgtcctatgcttcaagccttcaaaagttgctctaggccatgccaaatgtttgtgcacttaataatgcacttttgtttgcatcagtggcccttgcgatattaagggagacattagcttcgaggaactaagagctaaagcctatgaggaaggaaagcaagggcattctctgcaatcaatagtaagttttccattttccagcactcccaattcattgatagttttatctgtggattttagcagaagtaatacctgctttcattagctttgcttacatggtctgatctatgtaaatttgaattgatgtgatctctttcaggttgagggagaaagaaatctacaaaacgcaaagttaatggagtttactaatctgctcaatagtgcacgtccatcacaaactccaagctttcctactatgagttccttccctgaagtgaaaaacaactcatcattcggggcttctcaaaccaatggaccacctgtgttcagtagtttcagtcaaattggagcagcaactaatattggacctgggccagggtactactctactagttcttttgtaaaatatgcagtgattgtgttactaatctactccctccgtttcacaatgtaagactttctagcattgcccacatacatatagatgttaatgaatctaaacacatgcatatgtctagattcattaacatttaaatgaatgtaggcaatgctagaaagtcttacattgtgaaacggaggaagtattgaagaaagacaatttaatcagaaagcagcgcttagaaaagttctttaaacacaattgcaaagcttcacatatagttgatcaattttctaatgctgttcatttggttctgatgtgtgttaaatgactgcctctcatgcagaaccaccacaccaggaatgccagccagtagtccttttggtcatccaagctctgcaccacttgctgcccctacttttggcagttctcaaatgaagtttggagtttcgagtatgttgctgaaagtttcatttactagatatttgtactgttacatggaagaaagatggcatataagctttcacctagtgaaattataaatattattctattgaggggtagttggaaagaatatgcttgcgcctaattcaaaaaagaagttttcaaaagttctgcttgatagtaggtattgtggactaagattttcaaaatatctattctaatacatctgactattttctctttcatctatgttcacaggcttttgttccatgattccatcccttctgggaattaataactattgtgttgggttgctatttaacttttagaattttgcaggcgtatttggaaaccagggttcaggtcaaccatttgggagctttcaagccccacgttttcccagttcgaagtctcctgcttcctctgtccagcacagagacattgataggcaatcacaagagttgcttaatgggatggtaactcctcctagtgtgatgtttgaggaatctgttgggtaagttctgtgataattataactgtatacttgataagaatgtatttctgctgatgggaatacatgttgctgtgttaaattagcttcgcatcatgtttaatcttctttgtttatattccacaggaacaacaaaaatgaaaatcaggatgatagcatctggttgaaggaaaaatgggcaattggggaggtgtgggatactttcctcttgggcattttcgaagttctgtttgctagaaatgtttgctcatttacaacttttgttcctgctatggtacatttgtagttagttctctatctccttagtccttaatattgtacgcatgttcatttagtagtgttgacatcatgcacagactgtggtctagattatgaatttgtggcatgcgcaagattatacttagaaagatctctacatatcgtacatgtttgcttagtgtgcatcttcccgtcttgcaaattatcaAGAGTTTGAACAAGCATTGGCTTTACTAACTTGTGCTTTCTTTATATTTGGCAAGTTTCTACAATTTAAATTCATACGAAACTTCCTTTCAGATACCGCTGGATGAACCACCTCAGAGGCACGTTAGCCATGTGTTTTAAGAACTCAAAGGTGTTTTTTTTTTTTGTGTTGTTGAGGCATGAGACCAAtgaactactcagctatgatctgacttccttgtagttgggttgccaccatatgtcgtacttttcttgcccgaggtatatatgctcaccttatacccttttcccttcagtttgtatgccatttatcagtgggccttgattctggctgctatgttgcagcttcatgacgatacaaaggaattatacaacaaacaagagaatttgcaagagtgaacagtgaaggaaggctgatgaaccaatgcattgtttggtaccacttatttattcctggaacatgaatgtgggcaactagagctaacaaccagctaactgcagtcttgcctgtcgagttagtatgtttttctctctttttttttaatctgtaattgtttattccaatagtatgtttttcTtttttttttaatctgtaattgtttattccaaaacttgttaggaagttattggaataagaaacagtaattattgc
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| CDS seq | ATGAGTCGGCGGCAGGAGATTTGCCGCAACTTCCAGCGCGGAAGggacccctcGgccccgacgaagcaagcagaggcggtgcagccaccgcaggcgcaggctgcccacacctcctgtgaagaccctcagtcatgcagacaacaaatttctgaggattttaagaacgaggctcctatttggaagcttacttgttatgctcatctcagaaatggcccttgcgatattaagggagacattagcttcgaggaactaagagctaaagcctatgaggaaggaaagcaagggcattctctgcaatcaatagttgagggagaaagaaatctacaaaacgcaaagttaatggagtttactaatctgctcaatagtgcacgtccatcacaaactccaagctttcctactatgagttccttccctgaagtgaaaaacaactcatcattcggggcttctcaaaccaatggaccacctgtaaccaccacaccaggaatgccagccagtagtccttttggtcatccaagctctgcaccacttgctgcccctacttttggcagttctcaaatgaagtttggagtttcgagcgtatttggaaaccagggttcaggtcaaccatttgggagctttcaagccccacgttttcccagttcgaagtctcctgcttcctctgtccagcacagagacattgataggcaatcacaagagttgcttaatgggatggtaactcctcctagtgtgatgtttgaggaatctgttgggaacaacaaaaatgaaaatcaggatgatagcatctggttgaaggaaaaatgggcaattggggagATACCGCTGGATGAACCACCTCAGAGGCACGTTAGCCATGTGTTTTAA
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| Protein seq | MSRRQEICRNFQRGRDPSAPTKQAEAVQPPQAQAAHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCDIKGDISFEELRAKAYEEGKQGHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGPPVTTTPGMPASSPFGHPSSAPLAAPTFGSSQMKFGVSSVFGNQGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQSQELLNGMVTPPSVMFEESVGNNKNENQDDSIWLKEKWAIGEIPLDEPPQRHVSHVF |
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| Function | Zinc finger CCCH domain-containing protein 46 [UniProtKB/Swiss-Prot:Q5Z807] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_06g0028340 | OsKYG_06g0028340.01 | Chr06 | 30943879 | 30947483 | + | NAM | ||
| CDS seq | ATGAGTCGGCGGCAGGAGATTTGCCGCAACTTCCAGCGCGGAAGggacccctcGgccccgacgaagcaagcagaggcggtgcagccaccgcaggcgcaggctgcccacacctcctgtgaagaccctcagtcatgcagacaacaaatttctgaggattttaagaacgaggctcctatttggaagcttacttgttatgctcatctcagaaatggcccttgcgatattaagggagacattagcttcgaggaactaagagctaaagcctatgaggaaggaaagcaagggcattctctgcaatcaatagttgagggagaaagaaatctacaaaacgcaaagttaatggagtttactaatctgctcaatagtgcacgtccatcacaaactccaagctttcctactatgagttccttccctgaagtgaaaaacaactcatcattcggggcttctcaaaccaatggaccacctgtaaccaccacaccaggaatgccagccagtagtccttttggtcatccaagctctgcaccacttgctgcccctacttttggcagttctcaaatgaagtttggagtttcgagcgtatttggaaaccagggttcaggtcaaccatttgggagctttcaagccccacgttttcccagttcgaagtctcctgcttcctctgtccagcacagagacattgataggcaatcacaagagttgcttaatgggatggtaactcctcctagtgtgatgtttgaggaatctgttgggaacaacaaaaatgaaaatcaggatgatagcatctggttgaaggaaaaatgggcaattggggagATACCGCTGGATGAACCACCTCAGAGGCACGTTAGCCATGTGTTTTAA
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| Protein seq | MSRRQEICRNFQRGRDPSAPTKQAEAVQPPQAQAAHTSCEDPQSCRQQISEDFKNEAPIWKLTCYAHLRNGPCDIKGDISFEELRAKAYEEGKQGHSLQSIVEGERNLQNAKLMEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGPPVTTTPGMPASSPFGHPSSAPLAAPTFGSSQMKFGVSSVFGNQGSGQPFGSFQAPRFPSSKSPASSVQHRDIDRQSQELLNGMVTPPSVMFEESVGNNKNENQDDSIWLKEKWAIGEIPLDEPPQRHVSHVF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_06g0028340 | OsKYG_06g0028340.02 | Chr06 | 30943882 | 30947483 | + | IsoSeq | ||
| CDS seq | CCGCGTCTCGAGTTCTCGGCGGAGGCGGCAAGCCGGCGAGGGCAACCCACCCACCGACGTCGTGCGGCCGCGCTTGCTGCGTCGCGTGCCCACGCCAATCCCGTGGCGGCGGAAGGAGGAGGAGCAAGCGCTTGGGAGGAGCTAAACCCTAGAGGCGGAGCTCTAGAATCGAATCCCCCCTTCCTTCCGCTTTGCGGCGATGAGTCGGCGGCAGGAGATTTGCCGCAACTTCCAGCGCGGAAGttgcaagtacggagcgcagtgcaggtatttgcatgcctcccctcaccagcaacagcagcagcagcagcagcaggcgaagcccaacccgtttggatttggcaccggaagcaggcagcagcagcagccgtcatttggctcacagttccagcagcagcaacagcagcagcagaagcccaatccTtttggttttggggtacaaggtgccaatgcccagtc
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| Protein seq | PRLEFSAEAASRRGQPTHRRRAAALAASRAHANPVAAEGGGASAWEELNPRGGALESNPPFLPLCGDESAAGDLPQLPARKLQVRSAVQVFACLPSPATAAAAAAGEAQPVWIWHRKQAAAAAVIWLTVPAAATAAAEAQSFWFWGTRCQCPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr06 | 30945356 | 30945758 | + | OsKYG_06g0028340.02 | OsKYG_06g0028340.02,OsKYG_06g0028340.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.276264 | 5.840417 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0704300 | RBH | 1.057134 | 0.425928 | 2.540575 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49080 | RBH | 0.713330 | 0.286966 | 0.652567 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028340 | RBH | 0.161527 | 2.178309 | 2.781462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028150 | RBH | 0.000000 | 3.046380 | 1.322831 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028300 | RBH | 0.582098 | 2.344331 | 2.105927 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027890 | RBH | 0.186176 | 0.381420 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028380 | RBH | 2.230225 | 5.563532 | 6.703668 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467700 | RBH | 15.4553785 | 24.3381815 | 32.37723 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027750 | RBH | 0.369080 | 0.221527 | 0.323487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0451200 | RBH | 4.4769385 | 7.903253 | 17.3134305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028290 | RBH | 0.190916 | 0.131134 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027930 | RBH | 5.898922 | 1.752455 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028590 | RBH | 0.490863 | 1.373706 | 1.199455 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028210 | RBH | 0.223338 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028090 | RBH | 0.812897 | 1.781276 | 1.678802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028170 | RBH | 0.470051 | 6.263243 | 4.436798 |
