Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_06g0025210 | OGI:06076850 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr06:28463272-28470066 | ||||||||
| Gene Symbol | PLS1, OsVHA-A, VHAA1, VHA-A1, OsPLS1, OsPSL1/VHA-A1 | ||||||||||
| DNA seq | gcgtgttttgtgctttgcacatggggggaacccatctcacattccaatggaaacatacaggaagtaaggtgttgatgggagaaaaatatatgatgttcaagtagatggtcatcgtgcttattcaactatcaacatgtgcacaggtatcttacaatataaataattgtacaccaaaaagaatgccttcatcgagcaccggaggccaaacagggaagctacaaaaagcagcagcagtgtcgatgcagaaggaaaatatgatgattctgaaacgtaattcacatctacaacctcacgcgaagcaaaataaattgccccaactcgcttcgaatatctggtgatattttattgtttacacgaatgtgatcctcaatttacagcacttcacctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctggaattttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatctgttgcaagagtgaagtattcagcaaacaggattaccaatgaaaataaaaccaatcaaatggtcaccatttgaggtatggaactgaaatacttacactaggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtccatcagcattagctgcgcgctccacagcctacaagacaagacagaaacatacaatttgttaaggtatgatggattcaaacaagctacattcacttatgaatactataagtttctttccagcaaaagaaaatagtgcagatatcagatgagtcttacaagaaagttcatacatcacaattaactaaaggatattgctacttgctacataccttctctaaaactaggtgaataaatatcaagtatttgcttggtaacttttcttattgacataatcattatataaacttcagcccgttgcaagtctagccaaagcttttcgagtttacacttagccctagcacctagtagtttgtgcaccaattgccAaaaaaaaagaaaaaagaaaGaagtcacacactttcattcaaccagaggaatttgagcaaaaatggttcccttaaacccaaatccttttaacttgcccttgctgactcagttgaggtGGAcatatgaacacaatgtcatggtgaacccttaggcattagcacactagcatcgaagccaaccaagggagctagtgagagtggatgcaagaatgcaacagaactggggttaagtaagcgaagccattatttttaatcaacttttaatgtgagaattctgtttggctgaggatctgtgcgattggtgccaacacccagggttagtgctttaatgttttttgtttagggctagcctcctaaagataatgagcatggctcattgatatttaagacatatatcacaacacagttcatgataggagtaaagaacggtatatttatcagttccatgcaagaaacatcaaataattaatccaataagctcctagatcatgtagcaaaaaaacaacaatatttcaatccacattggtaaaaagaaaattgtcataagcaataaaaaacttcaaaacaagatcaatcttactaatgctatagaaaacattcttcgcaggttcatacttcaaatttcaaatcaaagttgctcgagtaatttaaggttcaaggacgaaaggagtggtaaaaacacgttagatttacctgatttgctaatgtattgaaatgaataatgttgcgcatcatccaaacagacttgtagaatggacagaacttgtcatatctgtttcattatatagagatgatcagactaaagaaaatggttaatcattaaaatagagacaaccaataaatctgtattaaatcagaaaaaactagggtatgactcacggggtaaatgcattctgtgccaagtaatcttcccttagtagcttggctgtttccaatgtaatcttatcagattctgccagtgcatctttaccaacaagctgaaatttggtgaagatattaggccaaatggtgccacaataatattacacaaagcaagaagggtcaacaaatatcaataaaatacaaattgaatagtttgagcaactccaaatctaatgaagaaaacaaatattgtgaaagaccaaaaaggaggaccttggaaaacaaaaacaccatgtttaagtggtccaagttcaaactattgcttctacgactaaatctagggaacagatcatccttgcacaaggtgaaaaaaaaaatacctggacaatttcatttagatcgtcctctctctgtaacacttcacgagcttttgttctaatatcaatgaaatcttgatcaaacttctcatagaaggattccagagcctacagtacaggatatagtatgttagtgtaaaatggcgattttaattgtattgacatcatagggaagttaggaataacctttgagtattttgagtaagagatgagccaattgacagatgggaaatgctttctttgagccagcttcttatccaatccccaaaagacctgcaattgagaggagttaagattatcaaacaatgaacatgcagttagaaaggtttgaaaatttaattcaaaggttggattaatctagcagtttccttacctgcacaatactaagagttgcagaggtaacaggatctgaaaaatcacctccaggtggagagacagcaccaacaattgtgacactgcctgtccgatctggactgccgagacatttcaccttaccagcacgttcgtaaaaggatgccaaacgtgcagccaaatatgcagggtaaccactatccgcaggcatttcagcctggaaattgatcaaatcatcagtttcaaattcatattagtgcagagtaaagcagtaactagctagcgagagcactttcgactccaaataatttcctagtaagataactgcatagtaaatatttcaagcacgatgcatcagacgtatatgataacttccatgtaaatgtttcatgcatgatgtactagtaacagattttacttctgttcaacacattaatatatccccattgcactagtattcttgatgttggagggtacagtcagctattaatgaaattagtaataaaataagctactgaacggaaagaaaataaacaataatcctgaaaaaattaaaccccaaatacaaatagtggataatgatacattagaaagaattctcattcatgtcacagcacagcattgagaagtcaatataagttacaaaaatacaggccaaaaaggtaaaatagcaactcgaaaggaagcatcataccagacgtcctgaaatctcacgcaaagcttcagcccaccgagaagtagaatcagccatcatactgacattatagcccatgtcacggaagtattcagcaattgtaattcctggtgggcagaaaaaaatatgattgttttgttgataaagaaaacatcaggcataaagcataactaagcaaggactccttttagtgttctacaagaaactacacatattgtaccactttgatgatgttcattcactaaaagatctagtgctagcaagttagttaccatccgtcataactcataaactgaactgcaacagaacagttagtaagtaatacaggtcatggctaacaggaatatgtgtatatcctcaataaataatacaggccatggataacataaagatgtgatcctcaatgttctactgaacaattatggaacatgcatagatgtatttgtcaatgcaaccttagttattccaaaattagctcatagatcacaaatggctaaggacaagcctgcagaaatccatggtctgatgtattgagatagctatagtctccaacaaagcaacactttcttctagagaaaatgaacttcagaagatcgaaacacattcatgtagtactatactagtggaatgcgaaattaaaaacatcagtaatcagtatatatgtattacctgtataaatggaggcttcacgagcagcaacaggcatgttggatgtgttagcaacaagtgtagttcttttcatgacagactcttcacgtccatcaggcaatgtcattgtcaattgtgggaagtccataaggacctcagccatctcgtttcctctttccccgcagcccacataaaccacagcttcagaattggagtactgcataagatattttcagtcaggaaaggcacagaattcagtcattttaaaaggctaatgcccatgggcaatgctagcagttatcaaatagagaggaatagtgaaaatacctttgaaagtgcctgactaatgacagtttttccacaaccaaatgctccaggaatagcacaagttcctccaagaactgagggaaatagtgcatcaagtacacgctgaaaacagttcacaggatatgagacacggcaaaatatgatagaacaggacaggaaagcatcacttcattaaattttgacactaataaaataacacattatgaaggagctgggagtagcaagcttcgtgtacctgtcctgttagaagaggcgtgtcagcagcaagctttgatgaaacaggccttggtgaccggacaggccatgtctgcagagaataaatatgatgacattcagatatacataaactcggtaaatacggatttaatgaaagggaaagcactttgcctggagcatagtaaattgctttttgatgccctggaattccagttccagaactgtatcctgtgtacagagcattatgattaggacatcacataaagttaagcagaaaaaaaaatgaggcacagaagaagcagctttaagtaacacgtactaacctgcaagctatactggccagctggtgcaatgtaacttattttccccatagaaccaggaggaagggcaacatgatgtttcatcagcgtattctcaaacacagtctgtgaggcagttaggcaacacaaagacacataaaaagattaacatcatcagggatctgcagattgcagaagatcgctagcaataacacaagataataacttgtaaaaaagggaactgtcttgttaacttacagcatatagatctccaccagtgatggcatctccaacacctattcaaatgaccaatgtaatttatctatgtacaggataaaacttgaaaagagacatgctcagattttataacaggttagcaggcacaatacctagcttctttggctcaaaatcccacaactgatctttgtcaagagcagggactgaaacaccacgtggtatgtacacatctccagactttatagcaatagtttttagagggcgctgcaaagtgtagaaaggaaaaaaggtcatgtagtcagcataaagtcctcatatcagcctaataaatgtccgattattacatttgtctcacctggattccatcaaagatatttccaaggataccaggtcccaattcaactgaaagaggctgatgaaaatagcaacaatgtgttataaaagaaatgaaaagggtaagaaaaccatatgtgaaatgcacatagaatttaacaatgcatcacacctttcttgttctcaacactggatcattgaccatcaacccagctgtttcctcataaactgcaaacggtaatcacaagaaaaaattggtgaaatttatattgtacatgtcatgtggggaaaaggcaccacaaatatgtgaggtagaatttcaccgtcctataccttgaatggtggctgaatcaccctcaagacgaataatttccccaatgaggttatcattaccaactcggacaagttcatacatggcagcaccacccattccatcagccacgaccacaggtccagaaacctagaagaatgcaatatgaaggcgaaacaattcgttcaatacaaaaaaaaaaaagagggatgaaatgatggatcatgtgccaatagtagacaatcaacatattatccaaacgggctaaactcccaaggataatagcgcatctccacatcggggatggttcactaaccaaccccatcacaatagtgtcccgcatatgagtttggaagttaacgcatcaaacctcgatccacgcagtctagccagcgtgatccgaacaccagtagaaacctaaattcaaccgtcctatcaacctaatctcgcatcaattcaactcgatccaaacaccacccgagtccgaggctctcggcacagtcgcatcgcctgacgattccccagtcagcagcagtgccacccacactctcgcgatcggggattcgagaccagcactaaaatccacagagactcacagctaaaactccaccgatccggaacaagccgaatccgaagcagaggccgccgcatctacgcacgagagtgaccgatccaatccaacatggggaagaggaaggaagacgatgaggggtgagggaaccttgcggacgtagccgtactcgctctccttctccgagtcctcgaaggtcgtgacgcgatcgtacgacatggtggtcgtcgccggcgggggcGggggcgcggcggcggcggcgggtggtgggagggggtcgtcgccggcggtcagatcacgggggggagaggagaagcgaagagggagacggctctctcgctcgatctgggctggaatggaagacgcgatggggaagggggccacgactgcataagcggattttgttttccgatttgttttttttGttttttttcctccagcgaattttaaatttgaatctatgggtttttcttgttttgtctttctgttttgcagctgattggggtttgattttgtgttgctttagctgttggttttttcattgtggcatgtc
More
|
||||||||||
| CDS seq | atgtcgtacgatcgcgtcacgaccttcgaggactcggagaaggagagcgagtacggctacgtccgcaaggtttctggacctgtggtcgtggctgatggaatgggtggtgctgccatgtatgaacttgtccgagttggtaatgataacctcattggggaaattattcgtcttgagggtgattcagccaccattcaagtttatgaggaaacagctgggttgatggtcaatgatccagtgttgagaacaagaaagcctctttcagttgaattgggacctggtatccttggaaatatctttgatggaatccagcgccctctaaaaactattgctataaagtctggagatgtgtacataccacgtggtgtttcagtccctgctcttgacaaagatcagttgtgggattttgagccaaagaagctaggtgttggagatgccatcactggtggagatctatatgctactgtgtttgagaatacgctgatgaaacatcatgttgcccttcctcctggttctatggggaaaataagttacattgcaccagctggccagtatagcttgcaggatacagttctggaactggaattccagggcatcaaaaagcaatttactatgctccagacatggcctgtccggtcaccaaggcctgtttcatcaaagcttgctgctgacacgcctcttctaacaggacagcgtgtacttgatgcactatttccctcagttcttggaggaacttgtgctattcctggagcatttggttgtggaaaaactgtcattagtcaggcactttcaaagtactccaattctgaagctgtggtttatgtgggctgcggggaaagaggaaacgagatggctgaggtccttatggacttcccacaattgacaatgacattgcctgatggacgtgaagagtctgtcatgaaaagaactacacttgttgctaacacatccaacatgcctgttgctgctcgtgaagcctccatttatacaggaattacaattgctgaatacttccgtgacatgggctataatgtcagtatgatggctgattctacttctcggtgggctgaagctttgcgtgagatttcaggacgtctggctgaaatgcctgcggatagtggttaccctgcatatttggctgcacgtttggcatccttttacgaacgtgctggtaaggtgaaatgtctcggcagtccagatcggacaggcagtgtcacaattgttggtgctgtctctccacctggaggtgatttttcagatcctgttacctctgcaactcttagtattgtgcaggtcttttggggattggataagaagctggctcaaagaaagcatttcccatctgtcaattggctcatctcttactcaaaatactcaaaggctctggaatccttctatgagaagtttgatcaagatttcattgatattagaacaaaagctcgtgaagtgttacagagagaggacgatctaaatgaaattgtccagcttgttggtaaagatgcactggcagaatctgataagattacattggaaacagccaagctactaagggaagattacttggcacagaatgcatttaccccatatgacaagttctgtccattctacaagtctgtttggatgatgcgcaacattattcatttcaatacattagcaaatcaggctgtggagcgcgcagctaatgctgatggacaaaaaataacatacagtgtcataaagcatcgtatgggtgatctattttatcgcctagtatctcaaaagtttgaggaccctgcagagggtgaagatgtcctagtcgcaaaattccagaaattgtatgatgacctcacaaccggattccgcaacctagaagatgaagctaggtga
More
|
||||||||||
| Protein seq | MSYDRVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGNDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPALDKDQLWDFEPKKLGVGDAITGGDLYATVFENTLMKHHVALPPGSMGKISYIAPAGQYSLQDTVLELEFQGIKKQFTMLQTWPVRSPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSEAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFDQDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAANADGQKITYSVIKHRMGDLFYRLVSQKFEDPAEGEDVLVAKFQKLYDDLTTGFRNLEDEAR |
||||||||||
| Function | V-type proton ATPase catalytic subunit A [UniProtKB/Swiss-Prot:P09469] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_06g0025210 | OsKYG_06g0025210.01 | Chr06 | 28463272 | 28470066 | - | NAM | ||
| CDS seq | atgtcgtacgatcgcgtcacgaccttcgaggactcggagaaggagagcgagtacggctacgtccgcaaggtttctggacctgtggtcgtggctgatggaatgggtggtgctgccatgtatgaacttgtccgagttggtaatgataacctcattggggaaattattcgtcttgagggtgattcagccaccattcaagtttatgaggaaacagctgggttgatggtcaatgatccagtgttgagaacaagaaagcctctttcagttgaattgggacctggtatccttggaaatatctttgatggaatccagcgccctctaaaaactattgctataaagtctggagatgtgtacataccacgtggtgtttcagtccctgctcttgacaaagatcagttgtgggattttgagccaaagaagctaggtgttggagatgccatcactggtggagatctatatgctactgtgtttgagaatacgctgatgaaacatcatgttgcccttcctcctggttctatggggaaaataagttacattgcaccagctggccagtatagcttgcaggatacagttctggaactggaattccagggcatcaaaaagcaatttactatgctccagacatggcctgtccggtcaccaaggcctgtttcatcaaagcttgctgctgacacgcctcttctaacaggacagcgtgtacttgatgcactatttccctcagttcttggaggaacttgtgctattcctggagcatttggttgtggaaaaactgtcattagtcaggcactttcaaagtactccaattctgaagctgtggtttatgtgggctgcggggaaagaggaaacgagatggctgaggtccttatggacttcccacaattgacaatgacattgcctgatggacgtgaagagtctgtcatgaaaagaactacacttgttgctaacacatccaacatgcctgttgctgctcgtgaagcctccatttatacaggaattacaattgctgaatacttccgtgacatgggctataatgtcagtatgatggctgattctacttctcggtgggctgaagctttgcgtgagatttcaggacgtctggctgaaatgcctgcggatagtggttaccctgcatatttggctgcacgtttggcatccttttacgaacgtgctggtaaggtgaaatgtctcggcagtccagatcggacaggcagtgtcacaattgttggtgctgtctctccacctggaggtgatttttcagatcctgttacctctgcaactcttagtattgtgcaggtcttttggggattggataagaagctggctcaaagaaagcatttcccatctgtcaattggctcatctcttactcaaaatactcaaaggctctggaatccttctatgagaagtttgatcaagatttcattgatattagaacaaaagctcgtgaagtgttacagagagaggacgatctaaatgaaattgtccagcttgttggtaaagatgcactggcagaatctgataagattacattggaaacagccaagctactaagggaagattacttggcacagaatgcatttaccccatatgacaagttctgtccattctacaagtctgtttggatgatgcgcaacattattcatttcaatacattagcaaatcaggctgtggagcgcgcagctaatgctgatggacaaaaaataacatacagtgtcataaagcatcgtatgggtgatctattttatcgcctagtatctcaaaagtttgaggaccctgcagagggtgaagatgtcctagtcgcaaaattccagaaattgtatgatgacctcacaaccggattccgcaacctagaagatgaagctaggtga
More
|
|||||||
| Protein seq | MSYDRVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGNDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPALDKDQLWDFEPKKLGVGDAITGGDLYATVFENTLMKHHVALPPGSMGKISYIAPAGQYSLQDTVLELEFQGIKKQFTMLQTWPVRSPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSEAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALESFYEKFDQDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFNTLANQAVERAANADGQKITYSVIKHRMGDLFYRLVSQKFEDPAEGEDVLVAKFQKLYDDLTTGFRNLEDEAR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.841855 | 110.635376 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0662000 | RBH | 13.157231 | 15.941171 | 35.598782 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45120 | RBH | 8.818312 | 10.368055 | 9.043168 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0662000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025250 | RBH | 3.437575 | 174.431381 | 31.590532 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025060 | RBH | 1.752306 | 33.205296 | 25.619902 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025230 | RBH | 6.363799 | 163.478912 | 59.567791 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0024820 | RBH | 0.649428 | 4.557499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025290 | RBH | 35.112110 | 160.356613 | 113.460320 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0427600 | RBH | 34.488817 | 45.383814 | 65.6629845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0024790 | RBH | 1.552856 | 12.871121 | 10.603847 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0410800 | RBH | 42.457781 | 31.2910455 | 36.9617975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025200 | RBH | 2.139321 | 2.394170 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005640 | RBH | 0.106755 | 52.154861 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0024860 | RBH | 19.161407 | 106.421814 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025450 | RBH | 5.586042 | 8.508454 | 10.193073 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025100 | RBH | 1.903810 | 48.186104 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024950 | RBH | 2.566061 | 34.780144 | 20.010670 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025060 | RBH | 4.634284 | 115.997795 | 61.708103 |
