Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_05g0025340 | OGI:05073740 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr05:28283811-28285201 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacagcaaaggacgaaacagcttagattacatgtaggcttaagatgtttagagatcccagtggaaaggaagcaacgcataaaaccatggtgactcatgctatgaagtttcgccagtttttcgagaacacgtgCcctcgtgttgacactgaacaccatcttgactgctccccttctggtgcgcttggatagcaggtaaacaacatcatcatcatcagcgatgctcagggtagggtaagccatgtgaagactctccacggacatggcggccttcttccccttagtctattttcctcatgtaactatgcagggcggtgtccaggtggttggaagtgacggagcatccaggcttccagccatcccatgaagtgaccgggatgggcatgctccatgtcttgaccttccagctaccatcatcgaccaagacctctagatgcgagcttcgaaatcgctgggtggccacccattcgtgaattccatcttgacgtacttgatagtgtccctgctctggctgacgacgatgtcacggcaatagtacgggcagcggttgaggaacaatggccagttgaccctagcgggcaatggcagcggcatgtcgcggagcttggggctgtcttcgagcacgtcgcagagaaggatgcctcgccagagatcgacccagccaactgtgcctttggcacctccgagcgtgatcaccttggtagtcgtatggaagatcctcctcagtgccgagtcagggacggggcacaccgtTCtCctcatcagtggctcctccactgtcaactgatgggagatccaactactccccggctttccatcggaggtagagcgacacaggtgaagcctgaagtcgacatgataccaaggttgaagaacggccacagcgtaggaggaggaggaggaggagtcgttgccgcagctcaggatggcaatgttgtcgtctccgaagccacggtcacttgggcggctcgggagacggtaaagccttgcgccttcggagtgagggtgcgccttgtagacgaagtagtcgctgaaacagtgatggaatctggcgaggcgatcgacggggacgcggaggaggaggaggtcggcgtccgcgctgaccaccgtgggcgccacgaacttgtccgaggggttgggggtccagatgcgccagaccagggcagtagacggagaggtgcgagagggctggcggggtggcggcgcgcaaggtcaccgagatggtgaggccggtgctcgtcgtggaagtggcggtggtggcgtcgggccggtggtcgtcgtcgtcgtcgtcgtcggcggcgacgtggccccagagctcgagcaggacgacgcttgggatatcgcccttgccctcgccgcttccgcttgccatggaggcagcagcggtggccat
More
|
||||||||||
| CDS seq | atggccaccgctgctgcctccatggcaagcggaagcggcgagggcaagggcgatatcccaagcgtcgtcctgctcgagctctggggccacgtcgccgccgacgacgacgacgacgacgaccaccggcccgacgccaccaccgccacttccacgacgagcaccggcctcaccatctcggtgaccttgcgcgccgccaccccgccagccctctcgcacctctccgtctactgccctggtctggcgcatctggacccccaacccctcggacaagttcgtggcgcccacggtggcgcaaggctttaccgtctcccgagccgcccaagtgaccgtggcttcggagacgacaacattgccatcctgagctgcggcaacgactcctcctcctcctcctcctacgctgtggccgttcttcaaccttggtatcatgtcgacttcaggcttcacctgtgtcgctctacctccgatggaaagccggggagtagttggatctcccatcagttgacagtggaggagccactgatgagGaGAacggtgtgccccgtccctgactcggcactgaggaggatcttccatacgactaccaaggtgatcacgctcggaggtgccaaaggcacagttggctgggtcgatctctggcgaggcatccttctctgcgacgtgctcgaagacagccccaagctccgcgacatgccgctgccattgcccgctagggtcaactggccattgttcctcaaccgctgcccgtactattgccgtgacatcgtcgtcagccagagcagggacactatcaagtacgtcaagatggaattcacgaatggctcgcatctagaggtcttggtcgatgatggtagctggaaggtcaagacatggagcatgcccatcccggtcacttcatgggatggctggaagcctggatgctccgtcacttccaaccacctggacaccgccctgcatagttacatgaggaaaatagactaa
More
|
||||||||||
| Protein seq | MATAAASMASGSGEGKGDIPSVVLLELWGHVAADDDDDDDHRPDATTATSTTSTGLTISVTLRAATPPALSHLSVYCPGLAHLDPQPLGQVRGAHGGARLYRLPSRPSDRGFGDDNIAILSCGNDSSSSSSYAVAVLQPWYHVDFRLHLCRSTSDGKPGSSWISHQLTVEEPLMRRTVCPVPDSALRRIFHTTTKVITLGGAKGTVGWVDLWRGILLCDVLEDSPKLRDMPLPLPARVNWPLFLNRCPYYCRDIVVSQSRDTIKYVKMEFTNGSHLEVLVDDGSWKVKTWSMPIPVTSWDGWKPGCSVTSNHLDTALHSYMRKID |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_05g0025340 | OsKYG_05g0025340.01 | Chr05 | 28284089 | 28285201 | - | NAM | ||
| CDS seq | atggccaccgctgctgcctccatggcaagcggaagcggcgagggcaagggcgatatcccaagcgtcgtcctgctcgagctctggggccacgtcgccgccgacgacgacgacgacgacgaccaccggcccgacgccaccaccgccacttccacgacgagcaccggcctcaccatctcggtgaccttgcgcgccgccaccccgccagccctctcgcacctctccgtctactgccctggtctggcgcatctggacccccaacccctcggacaagttcgtggcgcccacggtggcgcaaggctttaccgtctcccgagccgcccaagtgaccgtggcttcggagacgacaacattgccatcctgagctgcggcaacgactcctcctcctcctcctcctacgctgtggccgttcttcaaccttggtatcatgtcgacttcaggcttcacctgtgtcgctctacctccgatggaaagccggggagtagttggatctcccatcagttgacagtggaggagccactgatgagGaGAacggtgtgccccgtccctgactcggcactgaggaggatcttccatacgactaccaaggtgatcacgctcggaggtgccaaaggcacagttggctgggtcgatctctggcgaggcatccttctctgcgacgtgctcgaagacagccccaagctccgcgacatgccgctgccattgcccgctagggtcaactggccattgttcctcaaccgctgcccgtactattgccgtgacatcgtcgtcagccagagcagggacactatcaagtacgtcaagatggaattcacgaatggctcgcatctagaggtcttggtcgatgatggtagctggaaggtcaagacatggagcatgcccatcccggtcacttcatgggatggctggaagcctggatgctccgtcacttccaaccacctggacaccgccctgcatagttacatgaggaaaatagactaa
More
|
|||||||
| Protein seq | MATAAASMASGSGEGKGDIPSVVLLELWGHVAADDDDDDDHRPDATTATSTTSTGLTISVTLRAATPPALSHLSVYCPGLAHLDPQPLGQVRGAHGGARLYRLPSRPSDRGFGDDNIAILSCGNDSSSSSSYAVAVLQPWYHVDFRLHLCRSTSDGKPGSSWISHQLTVEEPLMRRTVCPVPDSALRRIFHTTTKVITLGGAKGTVGWVDLWRGILLCDVLEDSPKLRDMPLPLPARVNWPLFLNRCPYYCRDIVVSQSRDTIKYVKMEFTNGSHLEVLVDDGSWKVKTWSMPIPVTSWDGWKPGCSVTSNHLDTALHSYMRKID
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_05g0025340 | OsKYG_05g0025340.02 | Chr05 | 28283811 | 28285189 | - | IsoSeq | ||
| CDS seq | tgcctccatggcaagcggaagcggcgagggcaagggcgatatcccaagcgtcgtcctgctcgagctctggggccacgtcgccgccgacgacgacgacgacgacgaccaccggcccgacgccaccaccgccacttccacgacgagcaccggcctcaccatctcggtgaccttgcgcgccgccaccccgccagccctctcgcacctctccgtctactgccctggtctggcgcatctggacccccaacccctcggacaagttcgtggcgcccacggtggtcagcgcggacgccgacctcctcctcctccgcgtccccgtcgatcgcctcgccagattccatcactgtttcagcgactacttcgtctacaaggcgcaccctcactccgaaggcgcaaggctttaccgtctcccgagccgcccaagtgaccgtggcttcggagacgacaacattgcca
More
|
|||||||
| Protein seq | CLHGKRKRRGQGRYPKRRPARALGPRRRRRRRRRRPPARRHHRHFHDEHRPHHLGDLARRHPASPLAPLRLLPWSGASGPPTPRTSSWRPRWSARTPTSSSSASPSIASPDSITVSATTSSTRRTLTPKAQGFTVSRAAQVTVASETTTLP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.005350 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0548700 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47520 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0548700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025830 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025590 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025610 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0232900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025240 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0434800 | RBH | 1.60476 | 4.455374 | 0.658299 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025430 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025540 | RBH | 4.570118 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025550 | RBH | 0.0 | 0.130109 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025580 | RBH | 0.0 | 0.699221 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025020 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025550 | RBH | 0.0 | 4.028591 | 0.0 |
