Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_04g0002480 | OGI:04013430 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr04:4382215-4383441 | ||||||||
| Gene Symbol | SIP29 | ||||||||||
| DNA seq | CTAAATATTCTCCTTGAGCCTCTCAACCCCTGCTTCCGAAGCCTCCAACCAAAGCTTATCATTGTCACGCTTCACGAAATCCATGGCAGCCTGGATTTCCTTCACTTCCCCCCTTAAGGAGAATCCTTCACTTCCCCCCTTAAGGTCTCCTGATTGCTTCTGGATTTTGCCTTTTTTTGCCTCGACCAACACATCTAATTCCATTTTAAGCCTCTCAACCCCTGCTTCAAACATGCTATTTTTCTGCTCTGCAGTCAAAACCTCCAACTGAATCTTATCATTTTCACCCTTTCTCAAATCCTTGCTGCTATGATTTTCCTCCACCTTCATCTTATGGTCTTCCAATTCTTTCATGATTTCTGCCTCGTCAGAATCAAATGCATTTGTAGATGTCTCTTTTGCCTCCACCAATTCCATCCGTGACCAAAGCCTATCATTTTCAATCAGAACCTTACTATAATAAGCCTCCAATTCCTGATTCTTCGCTAGAGCTGCCTCTAGCTCAGACTCCAGAGATGCTGCCCTTGCATCCATCTCTGCCTTGTGAACCCCAAGGACCCTCAATTCCTCCACCTTATCCTTAATTTGCTTCTCTGCTACTTGTTGGTATGTATCTGCAGCATCCATGACCACCAAAACTGCCTTTCTCGCATCCTTCAGGTCCTCCACCATTGCCTTAATTTGCTTCTTTGCTACTTCTTGGTACGCATCAGCAGCGTTCATTAACAGCAGGCCTGTCTTCCTCGTGTTCGCCAATTCCTCTTCCTTTGTCCTAATTTGCCTATCTGCTACATGTTGGTACGTATCGGCAGCATTCATGAACAGCAGACCCGCTTTCCTCGTGTCCTCCCGTTGCTTCACTAGCACAGCAGACAGTTTGGTGTTTTGGTGCTCCAACTCCCGCACCCTGTACTCCAGTGTGGAGGACACATTAGCCGCTCTTCTCTTCTCATTGGACAGCTCAGTGTTTTCATTCACCAACCTCCGCACCCTGCTCTCCAGGTAACTCTTCTCATTGGACAGCTCAGTGTTTTCATTCACCAACCACCGCACCCTGCTCTCCAGTCTACTGTTTTTGCGCTCCAACTCATACGGACCATCCTCCCAAGAATATCTATCCGCATCAGAGAAGAGAGATGGGATTATGCTGCGTACGTGCACAGGAATTGACTCGATTTGAAATAAATAAAATGATGTCTTGGCCCACTCGAATACCTCCAGTACCAT
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| CDS seq | ATGGTACTGGAGGTATTCGAGTGGGCCAAGACATCATTTTATTTATTTCAAATCGAGTCAATTCCTGTGCACGTACGCAGCATAATCCCATCTCTCTTCTCTGATGCGGATAGATATTCTTGGGAGGATGGTCCGTATGAGTTGGAGCGCAAAAACAGTAGACTGGAGAGCAGGGTGCGGTGGTTGGTGAATGAAAACACTGAGCTGTCCAATGAGAAGAGTTACCTGGAGAGCAGGGTGCGGAGGTTGGTGAATGAAAACACTGAGCTGTCCAATGAGAAGAGAAGAGCGGCTAATGTGTCCTCCACACTGGAGTACAGGGTGCGGGAGTTGGAGCACCAAAACACCAAACTGTCTGCTGTGCTAGTGAAGCAACGGGAGGACACGAGGAAAGCGGGTCTGCTGTTCATGAATGCTGCCGATACGTACCAACATGTAGCAGATAGGCAAATTAGGACAAAGGAAGAGGAATTGGCGAACACGAGGAAGACAGGCCTGCTGTTAATGAACGCTGCTGATGCGTACCAAGAAGTAGCAAAGAAGCAAATTAAGGCAATGGTGGAGGACCTGAAGGATGCGAGAAAGGCAGTTTTGGTGGTCATGGATGCTGCAGATACATACCAACAAGTAGCAGAGAAGCAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTTCACAAGGCAGAGATGGATGCAAGGGCAGCATCTCTGGAGTCTGAGCTAGAGGCAGCTCTAGCGAAGAATCAGGAATTGGAGGCTTATTATAGTAAGGTTCTGATTGAAAATGATAGGCTTTGGTCACGGATGGAATTGGTGGAGGCAAAAGAGACATCTACAAATGCATTTGATTCTGACGAGGCAGAAATCATGAAAGAATTGGAAGACCATAAGATGAAGGTGGAGGAAAATCATAGCAGCAAGGATTTGAGAAAGGGTGAAAATGATAAGATTCAGTTGGAGGTTTTGACTGCAGAGCAGAAAAATAGCATGTTTGAAGCAGGGGTTGAGAGGCTTAAAATGGAATTAGATGTGTTGGTCGAGGCAAAAAAAGGCAAAATCCAGAAGCAATCAGGAGACCTTAAGGGGGGAAGTGAAGGATTCTCCTTAAGGGGGGAAGTGAAGGAAATCCAGGCTGCCATGGATTTCGTGAAGCGTGACAATGATAAGCTTTGGTTGGAGGCTTCGGAAGCAGGGGTTGAGAGGCTCAAGGAGAATATTTAG
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| Protein seq | MVLEVFEWAKTSFYLFQIESIPVHVRSIIPSLFSDADRYSWEDGPYELERKNSRLESRVRWLVNENTELSNEKSYLESRVRRLVNENTELSNEKRRAANVSSTLEYRVRELEHQNTKLSAVLVKQREDTRKAGLLFMNAADTYQHVADRQIRTKEEELANTRKTGLLLMNAADAYQEVAKKQIKAMVEDLKDARKAVLVVMDAADTYQQVAEKQIKDKVEELRVLGVHKAEMDARAASLESELEAALAKNQELEAYYSKVLIENDRLWSRMELVEAKETSTNAFDSDEAEIMKELEDHKMKVEENHSSKDLRKGENDKIQLEVLTAEQKNSMFEAGVERLKMELDVLVEAKKGKIQKQSGDLKGGSEGFSLRGEVKEIQAAMDFVKRDNDKLWLEASEAGVERLKENI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_04g0002480 | OsKYG_04g0002480.01 | Chr04 | 4382215 | 4383441 | - | NAM | ||
| CDS seq | ATGGTACTGGAGGTATTCGAGTGGGCCAAGACATCATTTTATTTATTTCAAATCGAGTCAATTCCTGTGCACGTACGCAGCATAATCCCATCTCTCTTCTCTGATGCGGATAGATATTCTTGGGAGGATGGTCCGTATGAGTTGGAGCGCAAAAACAGTAGACTGGAGAGCAGGGTGCGGTGGTTGGTGAATGAAAACACTGAGCTGTCCAATGAGAAGAGTTACCTGGAGAGCAGGGTGCGGAGGTTGGTGAATGAAAACACTGAGCTGTCCAATGAGAAGAGAAGAGCGGCTAATGTGTCCTCCACACTGGAGTACAGGGTGCGGGAGTTGGAGCACCAAAACACCAAACTGTCTGCTGTGCTAGTGAAGCAACGGGAGGACACGAGGAAAGCGGGTCTGCTGTTCATGAATGCTGCCGATACGTACCAACATGTAGCAGATAGGCAAATTAGGACAAAGGAAGAGGAATTGGCGAACACGAGGAAGACAGGCCTGCTGTTAATGAACGCTGCTGATGCGTACCAAGAAGTAGCAAAGAAGCAAATTAAGGCAATGGTGGAGGACCTGAAGGATGCGAGAAAGGCAGTTTTGGTGGTCATGGATGCTGCAGATACATACCAACAAGTAGCAGAGAAGCAAATTAAGGATAAGGTGGAGGAATTGAGGGTCCTTGGGGTTCACAAGGCAGAGATGGATGCAAGGGCAGCATCTCTGGAGTCTGAGCTAGAGGCAGCTCTAGCGAAGAATCAGGAATTGGAGGCTTATTATAGTAAGGTTCTGATTGAAAATGATAGGCTTTGGTCACGGATGGAATTGGTGGAGGCAAAAGAGACATCTACAAATGCATTTGATTCTGACGAGGCAGAAATCATGAAAGAATTGGAAGACCATAAGATGAAGGTGGAGGAAAATCATAGCAGCAAGGATTTGAGAAAGGGTGAAAATGATAAGATTCAGTTGGAGGTTTTGACTGCAGAGCAGAAAAATAGCATGTTTGAAGCAGGGGTTGAGAGGCTTAAAATGGAATTAGATGTGTTGGTCGAGGCAAAAAAAGGCAAAATCCAGAAGCAATCAGGAGACCTTAAGGGGGGAAGTGAAGGATTCTCCTTAAGGGGGGAAGTGAAGGAAATCCAGGCTGCCATGGATTTCGTGAAGCGTGACAATGATAAGCTTTGGTTGGAGGCTTCGGAAGCAGGGGTTGAGAGGCTCAAGGAGAATATTTAG
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| Protein seq | MVLEVFEWAKTSFYLFQIESIPVHVRSIIPSLFSDADRYSWEDGPYELERKNSRLESRVRWLVNENTELSNEKSYLESRVRRLVNENTELSNEKRRAANVSSTLEYRVRELEHQNTKLSAVLVKQREDTRKAGLLFMNAADTYQHVADRQIRTKEEELANTRKTGLLLMNAADAYQEVAKKQIKAMVEDLKDARKAVLVVMDAADTYQQVAEKQIKDKVEELRVLGVHKAEMDARAASLESELEAALAKNQELEAYYSKVLIENDRLWSRMELVEAKETSTNAFDSDEAEIMKELEDHKMKVEENHSSKDLRKGENDKIQLEVLTAEQKNSMFEAGVERLKMELDVLVEAKKGKIQKQSGDLKGGSEGFSLRGEVKEIQAAMDFVKRDNDKLWLEASEAGVERLKENI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.982346 | 18.945160 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0160600 | RBH | 0.722173 | 0.869194 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07830 | RBH | 0.337153 | 0.358953 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0160600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002120 | RBH | 0.0 | 8.654568 | 1.263362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002420 | RBH | 0.221507 | 1.857351 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002200 | RBH | 0.0 | 6.390759 | 1.454403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002220 | RBH | 12.794680 | 11.201123 | 20.630539 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0064400 | RBH | 2.93417 | 7.016341 | 0.6537655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002330 | RBH | 0.0 | 0.0 | 0.110732 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0062200 | RBH | 1.9421885 | 9.043881 | 0.3856395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002250 | RBH | 0.0 | 0.049758 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002270 | RBH | 2.034306 | 19.084518 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002170 | RBH | 1.417649 | 2.437499 | 1.130626 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002210 | RBH | 0.149433 | 1.582928 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002410 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002270 | RBH | 0.0 | 19.746927 | 0.642845 |
