Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKYG_02g0012640		OGI:02030760 \| 15/16			KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)			Chr02:10871187-10875423		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		GELP35, OsGELP35, GELP36, OsGELP36, GELP37, OsGELP37
DNA seq		ATCAAGAGTTCATTATGCAGCGTAGCAGTAGCATTCTTGCGGTGATGGTGGTGTCGTTTGTAGTGCTGCTCGCCGGTGGTGCAGGCGCGGCGGCCGCCGCCGTGGCGCAGCCGGTGCCGCTCTTCGTGTTCGGCGACGGCACCCTTGACGTCGGAAACAACAACAACTTGCCCGGAGACGAGGACGTCGGGGATCCTCCTCGCGCCAACCACCCTTATTACGGCATCGACTTCCCCGGCGGCAAGGCCACCGGCAGGTTCAGCAACGGCTACACCATGGCCGACTTCATCGGTAGGAGCAGTATATGCATGTGGACAAAACGTCTATAACTTTTTCGAAAAAAAAAACACAATCATGTACTTTTTTCTGTCTACAAATATATGCTTTAAATTTGATCCATAAATAAAACCATTACTAAGGTGGTATTTAGATCCATGGAAACTTTAGTCTCTGTATTTAAACACTAATTTATAGTATTAAATATAGACTACTTACAAAACTAATTACATAAATGAAAGCTAATTTGTGAGACAATTTTATTAAGCAATAGATTCGTCTCGCAAATTAGTCTAAAATTATTGATGGGTTTTATTAATAGTCTACGTTTAATATTTATAATTAGTGTCCAAACATCCCATGTGATAGGGACTTACAAGTTTTAGTCTCATCTAAACAGGGTCTAATTATATATTACTAGTCCTATGAATTATATCTCGTCTAAATTTCTTCACATCTCTTCATCCCAAGCATCCTTCCAACCCGATGCATTTTATATTTCCCAACAAATGGAATATACATTAGTTATTAACTGTTAGCCAAGAAAGTGAAATGTTTGAGTATGTTTTGAGTTTTGACTAGTAATGCACGTCCATGATGCATATGCCCATAAGCTCATTTAATTATACATGATATGTACGGCAATGCGGTTGAACGCAGCAAAGTACATGGGATATGAGATGAGCCCTCCAGCTTACCTGTCTCTCTCCGGTCCGGTCAACATGGACGGTTTTACTGGAGTCAACTATGCTTCTGCAGATGCTGGCATACGGAACTCCACAGTGAGTCAACGAACTCTACTCCTTTTTTCCTTTTTAAGCAAAGGAGCTTAGAGACACAGTACGTCAGTACCATGTGAAGGTGTTTTTTAAACACAAATCTACACCACTATTATTGTCACATATCAAATCCTTATATATTATTGTGTTCATTACTGATTTAATAAGATTTGGATGTACGACTAGTTTGCATACATTAATAGATGATCTTTTAAGAACTGAGTGAGTACAAAATAACACATATTAAAGCTACACCGTGGGATTTTCGTAATTAAGTATACATGCACACGTTATTAAGAAGGTTACAGTTAGGTCAAGAATTTTACGTTGGTCTCTATTTTTTAATATTTCTTCCGTCCCATATTATAATGCATATATTTTTTATAATTAAGGTATTTAATGATATTTTGACCATTATTTATTCTACGTTATGTTTTCAACAAATATAAAATTAGTATCACATGAAAAATACTTTAAACTGTGAATGTAGTGATATAACATATATATATATAATATTTAGCATAATATGGTTAGTATGATTATTAATCAAAAGTTACCGAGTTTAATTTTTCTTAAAAAGATGGTGTCCCTATAATTTGGAATGTTAGGAGTATGTGTTAGGGGCACACTCACATACTCGGTGTCCTTCACTTGTATGCGTTCTGTGTGTCTGTGTCTTTCATCCATCATATATGGCGTGACAATGTCAATGTTATGAAATCAAATCGCCCAATAATCAGCATGATGCATACAGAACGCAGGCTTGACCATCCCACTGTCGAAGCAAATCAGCTACTTCGCTACGACGAGGTCACAGATGGAGTCCAAGCTGGGGCGCCTCGCCATGAGCGACCTCCTCTCGAGGTCCCTCTTCCTGCTCGCCGTCGGCACCATGGACCTCCTCCCGGACTGCAACTACTTCCTGACGTTCCCGCCGTCGCCGCCGGACAACAAGACGGAGGTGCAGCGGCTCGTGGAGTTCTACAACGCCAGCGTCACGTCGCTGTACGGCATGGGCGCCAGGAGGTTCGCCGTCGTCAACGTCGGCCTCGTCGGGTGCGGGCCGACGGTGGACACGCGCCGCGGTGGCGGCAGCGGCGGCGGCGGCGGGTGCGACGCGAGGATGAACGGCCTCGCCGCGGAGTTCAACGCGGCTCTCGGGGCACTCCTCGCCGGCCTCCGGTCCGAGAAGCGTCGCCTTCGCTACTCCCTCGCTGATTTCTACGGCTTCTCCAACGCCACCTTCGCCAACCCATCGGCTGCCGGTAAATCCTGATCTCTCTTCTAACGCGCACAAATTAATGACACCATTTTGTCCTCGCAAAAAAGAAAAAATGACACCATTTTGGATATCAACACACGTATGCTATTCAATATATTTGTAACTTTGACTGTTTTATTTCTATTGTAAAATGAGACCTTCTTATGTGCTTGGAATTAATTAGGATCGTTGATCTCTAATGATCTAACACTTCAAAGAGAGAAGGTACTAGGAGATAGGTATTAAAAGGGTGGGCCAGGTATGGAAGCTGGAAGGTTAAAATGGTAATTGAGTTTTATTAATTGATTTGTACGGCTAAGGACAAAATCGTCTTATTTTTATATCTGTATCCTACTCCTATCCGTTACAAGACAAGCTGCATTCATGCAGCACAGGAGGAAGAACGGTGTGCTTCTTTTCGTAGTTAAACGTTTATATCATACTTTTACCGATATGTACATATACATCTGCACACCTGCTCACCGCCGTACGCGCCCGCCGCTCACCGAGGCCGCACGCGCCCACCGGTCTCAGCCGCTTCACACACGCTGAGGTCGCTGCTGTTGTATGCGCCCTCCGGTCACAGCAAACTAATGCGGCAGGGGTCGTCGTCTCCGCCACCGCACGCGCCTGTCTCGGCCGCCCGTCGTAGCCGACGTTTGCGGTAGCCGGTCGTCATCACCGCCGCCGCACGCTGGTCATAGCCATTGCTCGCGCCAGCCGGTCGCTGCCTTGCACGTGCTTGCTGGTCGCCGCCGTCACGCGCGCAGCCCCTGCTCCTTGCATCCGAGCTCGTTCAATTGGGATTGGAGTTGATTAGGGTTAAGCACTGAAATCGTGGAAAGGGAATCGTGAACACTAGGCAACGGATGGAGAATTGGTGATTGGTCAATTACTAATCTATCCTTTGTAGTAATAATTTTTGTTCCTAAATTACCCTTTGTGAATTAACGGTGGATACCAATTGATTTAGGAGGCACCATAAAAGACCGCTTGTAAAATATATGAAAATTATATACGATCATATGGCCATAAGTATTAGTCAGTTAACCTTTTTATTATCAAACTTCCAAAAGTGTGGCCATGCAGATATTTACCTTAAAAAATACTTTCATATATAACTCCCATAAACGTGGGTTTTGTGAACTTGTTTAAATAAAAAATTATGGTCAAACTGGCATATTGAAGACTAGAAAAAAAGTTCACAAGACATATATTTATGAATAGAATGATTAGTTTTACGAAAAATATGTTTTCCATATACGAATTGCACCCGTCCAATCGAATTTTTTTTAAAAAAAATAGTGGCGTAAAATTTTTTAAAAAAGTTTTGTCAGTCTAAATTTGTAACAGTTTAACTTAGCATTTTTCTCATGATCGAAGGGCTCTAATATTTCATTTTATTCCTTACCTCTGAATTTCTGATACGGCTCGTTATAATTTTGCAGGGTTTGTGAACATCGACAGCTCGTGCTGCCCCGGGCCTTGCATGCCCTTCCCCTACTTCAACCAACCACCCTGCGACAACCGCGCGCAGTACTGGTTTTGGGACGGGGGTTACACCACGGAGCAAGCTGCCATGGTGGCTGCCGCTGCGTTCTACAATGGCACCGCAAAGTTCACCACGCCGGTTAACTTCAAGCAACTGATCCGAAGGAAAAAGTGATAACTCCACGCTCGATCTCATGTAGCAAGGCACGGCGCCCATAAAAAAAAAATCTTACGACATTCGATCAATAATAAGTTAAATGTTCTCCTTTAGAATTGAAGAATTTTAATAAGAATTGATACAATTACTGACATTTCAATGGATAAGTGGTTTGTTTATATGGATTTTGCTATCTTCAAACAACATTATATGTAAAGGCGTGGTCAAGATCCCTAGTCAAACTGTTTTTTTTAACTCATACTTCACACACCG More
CDS seq		ATGCAGCGTAGCAGTAGCATTCTTGCGGTGATGGTGGTGTCGTTTGTAGTGCTGCTCGCCGGTGGTGCAGGCGCGGCGGCCGCCGCCGTGGCGCAGCCGGTGCCGCTCTTCGTGTTCGGCGACGGCACCCTTGACGTCGGAAACAACAACAACTTGCCCGGAGACGAGGACGTCGGGGATCCTCCTCGCGCCAACCACCCTTATTACGGCATCGACTTCCCCGGCGGCAAGGCCACCGGCAGGTTCAGCAACGGCTACACCATGGCCGACTTCATCGCAAAGTACATGGGATATGAGATGAGCCCTCCAGCTTACCTGTCTCTCTCCGGTCCGGTCAACATGGACGGTTTTACTGGAGTCAACTATGCTTCTGCAGATGCTGGCATACGGAACTCCACAAACGCAGGCTTGACCATCCCACTGTCGAAGCAAATCAGCTACTTCGCTACGACGAGGTCACAGATGGAGTCCAAGCTGGGGCGCCTCGCCATGAGCGACCTCCTCTCGAGGTCCCTCTTCCTGCTCGCCGTCGGCACCATGGACCTCCTCCCGGACTGCAACTACTTCCTGACGTTCCCGCCGTCGCCGCCGGACAACAAGACGGAGGTGCAGCGGCTCGTGGAGTTCTACAACGCCAGCGTCACGTCGCTGTACGGCATGGGCGCCAGGAGGTTCGCCGTCGTCAACGTCGGCCTCGTCGGGTGCGGGCCGACGGTGGACACGCGCCGCGGTGGCGGCAGCGGCGGCGGCGGCGGGTGCGACGCGAGGATGAACGGCCTCGCCGCGGAGTTCAACGCGGCTCTCGGGGCACTCCTCGCCGGCCTCCGGTCCGAGAAGCGTCGCCTTCGCTACTCCCTCGCTGATTTCTACGGCTTCTCCAACGCCACCTTCGCCAACCCATCGGCTGCCGGGTTTGTGAACATCGACAGCTCGTGCTGCCCCGGGCCTTGCATGCCCTTCCCCTACTTCAACCAACCACCCTGCGACAACCGCGCGCAGTACTGGTTTTGGGACGGGGGTTACACCACGGAGCAAGCTGCCATGGTGGCTGCCGCTGCGTTCTACAATGGCACCGCAAAGTTCACCACGCCGGTTAACTTCAAGCAACTGATCCGAAGGAAAAAGTGA More
Protein seq		MQRSSSILAVMVVSFVVLLAGGAGAAAAAVAQPVPLFVFGDGTLDVGNNNNLPGDEDVGDPPRANHPYYGIDFPGGKATGRFSNGYTMADFIAKYMGYEMSPPAYLSLSGPVNMDGFTGVNYASADAGIRNSTNAGLTIPLSKQISYFATTRSQMESKLGRLAMSDLLSRSLFLLAVGTMDLLPDCNYFLTFPPSPPDNKTEVQRLVEFYNASVTSLYGMGARRFAVVNVGLVGCGPTVDTRRGGGSGGGGGCDARMNGLAAEFNAALGALLAGLRSEKRRLRYSLADFYGFSNATFANPSAAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFWDGGYTTEQAAMVAAAAFYNGTAKFTTPVNFKQLIRRKK
Function		GDSL esterase/lipase At1g71691 [UniProtKB/Swiss-Prot:Q9SF78]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_02g0012640	OsKYG_02g0012640.01	Chr02	10871187	10875423	+	NAM
CDS seq	ATGCAGCGTAGCAGTAGCATTCTTGCGGTGATGGTGGTGTCGTTTGTAGTGCTGCTCGCCGGTGGTGCAGGCGCGGCGGCCGCCGCCGTGGCGCAGCCGGTGCCGCTCTTCGTGTTCGGCGACGGCACCCTTGACGTCGGAAACAACAACAACTTGCCCGGAGACGAGGACGTCGGGGATCCTCCTCGCGCCAACCACCCTTATTACGGCATCGACTTCCCCGGCGGCAAGGCCACCGGCAGGTTCAGCAACGGCTACACCATGGCCGACTTCATCGCAAAGTACATGGGATATGAGATGAGCCCTCCAGCTTACCTGTCTCTCTCCGGTCCGGTCAACATGGACGGTTTTACTGGAGTCAACTATGCTTCTGCAGATGCTGGCATACGGAACTCCACAAACGCAGGCTTGACCATCCCACTGTCGAAGCAAATCAGCTACTTCGCTACGACGAGGTCACAGATGGAGTCCAAGCTGGGGCGCCTCGCCATGAGCGACCTCCTCTCGAGGTCCCTCTTCCTGCTCGCCGTCGGCACCATGGACCTCCTCCCGGACTGCAACTACTTCCTGACGTTCCCGCCGTCGCCGCCGGACAACAAGACGGAGGTGCAGCGGCTCGTGGAGTTCTACAACGCCAGCGTCACGTCGCTGTACGGCATGGGCGCCAGGAGGTTCGCCGTCGTCAACGTCGGCCTCGTCGGGTGCGGGCCGACGGTGGACACGCGCCGCGGTGGCGGCAGCGGCGGCGGCGGCGGGTGCGACGCGAGGATGAACGGCCTCGCCGCGGAGTTCAACGCGGCTCTCGGGGCACTCCTCGCCGGCCTCCGGTCCGAGAAGCGTCGCCTTCGCTACTCCCTCGCTGATTTCTACGGCTTCTCCAACGCCACCTTCGCCAACCCATCGGCTGCCGGGTTTGTGAACATCGACAGCTCGTGCTGCCCCGGGCCTTGCATGCCCTTCCCCTACTTCAACCAACCACCCTGCGACAACCGCGCGCAGTACTGGTTTTGGGACGGGGGTTACACCACGGAGCAAGCTGCCATGGTGGCTGCCGCTGCGTTCTACAATGGCACCGCAAAGTTCACCACGCCGGTTAACTTCAAGCAACTGATCCGAAGGAAAAAGTGA More
Protein seq	MQRSSSILAVMVVSFVVLLAGGAGAAAAAVAQPVPLFVFGDGTLDVGNNNNLPGDEDVGDPPRANHPYYGIDFPGGKATGRFSNGYTMADFIAKYMGYEMSPPAYLSLSGPVNMDGFTGVNYASADAGIRNSTNAGLTIPLSKQISYFATTRSQMESKLGRLAMSDLLSRSLFLLAVGTMDLLPDCNYFLTFPPSPPDNKTEVQRLVEFYNASVTSLYGMGARRFAVVNVGLVGCGPTVDTRRGGGSGGGGGCDARMNGLAAEFNAALGALLAGLRSEKRRLRYSLADFYGFSNATFANPSAAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFWDGGYTTEQAAMVAAAAFYNGTAKFTTPVNFKQLIRRKK More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0291600	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g18954	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0291600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0012920	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0013120	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0012960	RBH	0.0	0.000000	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0012800	RBH	0.0	0.188184	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0012710	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0173400	RBH	0.1046265	0.034612	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0012510	RBH	0.0	0.114354	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0186200	RBH	0	0.084727	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0013070	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0013120	RBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0012950	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0012760	RBH	0.0	2.975685	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G013100	RBH	0.0	0.000000	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0012880	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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