Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_02g0006060 | OGI:02013630 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr02:4303355-4306774 | ||||||||
| Gene Symbol | LA2, OsLA2 | ||||||||||
| DNA seq | CTACCTTTTCTCTTCAACGATATCCTCTATCCCAAAAATCGAGCCTTTTCCTCCCCCCTTCCTCCTCCACCGCCGCGGCTCCACCACCGCCGCCCATCTCGCCGCCGCCGCCGCCGCCGATGGCTCCCTCCACCGCCCTCTCTCCGGTGGCTTTCAAGTCCTCCTTCTCGCCGCTCCTCTTCAACCCGACCCGTAAGCCATCCTCTCCCTCCATCCTTCTCTCTCCGCGCGGCGGAGTCAGCCGTAGCCGGGCGCTTTTCGTCGTCGGGCGCAGCTGCCAGCGCGCGCGCGCGCGCGGAGGAATCTTCCACGGCGGTATTCTTCAGAGCCCAATTCGATTGGGGTGGCCTCGTCTCCGATGCCGCCGCGGCCCACCGCTTTGCCTGGCGTTCGTATTATCGGGTGGTCTCTTAACTCTAATTAGTGCGGATGCGAGTTGGGTTGCTGTGCTTGCGGTTAGGGTTTCACTGGGCGTTAAAAGAGAGAAAAAGAAATTCATTAAGTCTCAATTTAGTTGAATGTTTTTGCAGCGGTGTGTGGGGGGAGATTGTTGCGTTTGTGCTGTTCTAGGTGACGGCCGGAAATATTTGGTTTGTTTTTAGGTTTGACAATAATCTTTTCGTCGGTTTTCGGGGTCCTTGTACAATTCTATCATTTCAACCATGTACAAAGATGTTCCTTTTTTATGTTAGGAATTGGTTTCATTTAGTTCTAGTGGACATACGATTCTGGCATGTAGGTAATTTATTTCATTATGGTAAGTTTTCTGTTGTAGTAGTATCTGTTTATTCAGGGAATTGTATAAAATGGAGCATTACACATTAGCTTAGTCCTTGGGCTTCCGTTCTCCCCTTTTCTTTTGATCGGTGGAGCTTTGATCTTTGTTGACCAGTGCGTCCTTGTTGATTATTTTTCTTATGTTATAGCAACACCTGAACATTTTGCACCTGTTGTTTCTTTGTTGTTCAGGTTCTAAGATAAATGTCGAAGGTGCATTCTGTTTGCCATGTTACAATAGGAAAAAGGCTAGCAATAGATCCTTTCGCGTGTACAGTTTATTTGGGGGAAAAAAGGACAAAGACGAGAATGGTGAAGAAGCACCATCAAAGGTAAGAAAATTAGATGCCTTCTTTCAATTTGAACTTCTGTTGTACTCCCAATAACTAAAAGAGTATCTTCATGGATGCCTGAAATGAAAACAATTGCAAATTCACAGGTGGATGTCTACCTTAATCAGTTCAATACTATGTGCTATTCATATCTTTATACTTTTATCTGAATAGTAATATGCTCAAGATAATGCCTTGCTCATTGCAAATTCTGTTGAAGTCTTAAACTCCTGTAGAAAATAGTTAAGAGTGTAACTCATCATGTTGATATTTCAGTTCGTGCTGAAATTAAATTCTGCATATAATTTTAAGGGAATATAAAATATTTTAACTAATATGTACTTTTGTTATCACCTCTACTTTATAGCTTCTATGTTCAGTTTTCTTCTCTTTCCAATGAATGATGCCACTTCTAAAATGACAAACTTTTACTTTATTTGGGTATTTGTATAGTTGACTAAGATGCATGAGCTGTATTCACTATGTTCCCTTGTTTGTGCACAAATACCTAGTATAGTAGGCATTTTTATTTTTGTTTGTAAACATCCTGTAGTTCTCATTTTTGTACTTACTTTTAGGCAGGAATTTTCGGAAATATGCAAAATCTTTATGAAACTGTGAAGAAGGCCCAGATGGTTGTCCAAGTTGAGGCTGTCCGGGTGCAAAAGGAGCTTGCAGCGTATGCATTTGGATATCTGAGTAATATTTGATATGTTATCGCTAAATAGCACAGCAGTGTGACTTTTTTCCTCTTGTTTTAGGACTGAGATCGATGGTTACTGTGAAGGGGAACTAATCAAGGTATGCTTTGGATTAGTTGATTAATGTTGTTGTTAACTGAATTCTTGCTAGCTGTATGTTTCATTGTGCCTTGAACATTGAAGGGTTTCTTTGTTAAATGACTGACATTTTAGCATTGTTGAAAAAGCCTGTTGAACTTGAGCCAGGCTATAAAGATCACATATTATCACTGACAAACATTGATCTTTGTTTCACTGAGAAAGGGCGGTCATTTCCTACAGTAAAACCAAATATATTCCCTTATATGTTCTTATACTGAAGAATGGCATGTGTTTTTTATGATCTTAATTAGGTTGATCGCTATATGAAGTAATTAAAATCATTTGGTATCTCTTTTAGCTTTGGCTTAGATAAAGTTATGTTGAAAAGGTACTATTTTGGCACAAGAACACTGTCAAATCTGTGGGCAGGGAGGTGGTTATAAGTCATCAAATGATTTATGGTGGCATAGGTTGTTACCGTTTGAAAAGGTCATTGTCTTAACTCTTAAAGCCATTTGAAAATGTGCATGTTAATAATGTCTTAGCTTTTCAAATGACAAAAATAACGTTGCAATACCTTGACATTTTCTCCCATGAGCTATGTGCTATGCTGGTATATTTTGTAGAGCCATATGCTGTCAAAGTTTGCTAAATCTTATTTGTTTCTTATAAGTTTAGCAGGACTATCCGATTATTACATTCCTTTGCTTTTCTCGAAAGTAGAAAATCACATGCATATACTTCCGGTGCAAGTATTTGACCTGATTCATTAACCAGGTAACACTTTCTGGGAACCAGCAGCCCGTAAGAGTTGAAATCACCGAAGCTGCAATGGAAGTGGGTGCTGAAGTATGTATTTTATCTACCATTTTAATCATTTTCTTTGACGATTTCTTGCATGTTCGCATGATTTTTGGCATGAGTCAACCATTTCAATGTTCACACATGAATTTGATAAATACCTTATGTATGTACCCGTTAGCAGACCAAAACAAAACCAAATTGTTCAAAGTGTGATATATATAGTATCCTTTCAGAAACTTTCTGAGCTGGTGAACGACGCCTACAAGGATGCACATCAGAGGAGTGTCCAGGTGCGAATCCTGCTATTACTTTTTGCGTAGAAATTGAAACTTGCGTTCTATACTAACACGGTACTGTACTTAAAACCTGCAGGCAATGAAGGAGAGGATGGCTGATCTGGCACAGAGCTTAGGAATGCCAGCAGGCCTTGGTGATGGACTCAAGTGATAGTGTGGTACATGAATGCTTTTCAATAAAAAAAAAGTGTATCTCAATTTTGTATACTAGCTGTATTGAGTCATCAGTTTAAAATTCGTGGCGAGTACTGTTAGCTGTGTAAGAACTGTAATCGAGAACATCTGATCCTGTTTTCCTTAATCATTGGCACACCATAATGCATTGACGCAAGTGTGCTGTTTTACAACTGCTGTTGATGTGCAGAATGAAATCTGTTCCAAACAGAGAAATGGGTGGATATGGGGAGGCTAATTCATGGGGCACTTGGC
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| CDS seq | ATGGCTCCCTCCACCGCCCTCTCTCCGGTGGCTTTCAAGTCCTCCTTCTCGCCGCTCCTCTTCAACCCGACCCGTTCTAAGATAAATGTCGAAGGTGCATTCTGTTTGCCATGTTACAATAGGAAAAAGGCTAGCAATAGATCCTTTCGCGTGTACAGTTTATTTGGGGGAAAAAAGGACAAAGACGAGAATGGTGAAGAAGCACCATCAAAGGCAGGAATTTTCGGAAATATGCAAAATCTTTATGAAACTGTGAAGAAGGCCCAGATGGTTGTCCAAGTTGAGGCTGTCCGGGTGCAAAAGGAGCTTGCAGCGACTGAGATCGATGGTTACTGTGAAGGGGAACTAATCAAGGTAACACTTTCTGGGAACCAGCAGCCCGTAAGAGTTGAAATCACCGAAGCTGCAATGGAAGTGGGTGCTGAAAAACTTTCTGAGCTGGTGAACGACGCCTACAAGGATGCACATCAGAGGAGTGTCCAGGCAATGAAGGAGAGGATGGCTGATCTGGCACAGAGCTTAGGAATGCCAGCAGGCCTTGGTGATGGACTCAAGTGA
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| Protein seq | MAPSTALSPVAFKSSFSPLLFNPTRSKINVEGAFCLPCYNRKKASNRSFRVYSLFGGKKDKDENGEEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIKVTLSGNQQPVRVEITEAAMEVGAEKLSELVNDAYKDAHQRSVQAMKERMADLAQSLGMPAGLGDGLK |
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| Function | Nucleoid-associated protein At2g24020, chloroplastic [UniProtKB/Swiss-Prot:O82230] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_02g0006060 | OsKYG_02g0006060.02 | Chr02 | 4303395 | 4306692 | + | NAM | ||
| CDS seq | ATGGCTCCCTCCACCGCCCTCTCTCCGGTGGCTTTCAAGTCCTCCTTCTCGCCGCTCCTCTTCAACCCGACCCGTTCTAAGATAAATGTCGAAGGTGCATTCTGTTTGCCATGTTACAATAGGAAAAAGGCTAGCAATAGATCCTTTCGCGTGTACAGTTTATTTGGGGGAAAAAAGGACAAAGACGAGAATGGTGAAGAAGCACCATCAAAGGCAGGAATTTTCGGAAATATGCAAAATCTTTATGAAACTGTGAAGAAGGCCCAGATGGTTGTCCAAGTTGAGGCTGTCCGGGTGCAAAAGGAGCTTGCAGCGACTGAGATCGATGGTTACTGTGAAGGGGAACTAATCAAGGTAACACTTTCTGGGAACCAGCAGCCCGTAAGAGTTGAAATCACCGAAGCTGCAATGGAAGTGGGTGCTGAAAAACTTTCTGAGCTGGTGAACGACGCCTACAAGGATGCACATCAGAGGAGTGTCCAGGCAATGAAGGAGAGGATGGCTGATCTGGCACAGAGCTTAGGAATGCCAGCAGGCCTTGGTGATGGACTCAAGTGA
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| Protein seq | MAPSTALSPVAFKSSFSPLLFNPTRSKINVEGAFCLPCYNRKKASNRSFRVYSLFGGKKDKDENGEEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIKVTLSGNQQPVRVEITEAAMEVGAEKLSELVNDAYKDAHQRSVQAMKERMADLAQSLGMPAGLGDGLK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_02g0006060 | OsKYG_02g0006060.01 | Chr02 | 4303355 | 4306774 | + | NAM | ||
| CDS seq | ATGGCTCCCTCCACCGCCCTCTCTCCGGTGGCTTTCAAGTCCTCCTTCTCGCCGCTCCTCTTCAACCCGACCCGTTCTAAGATAAATGTCGAAGGTGCATTCTGTTTGCCATGTTACAATAGGAAAAAGGCTAGCAATAGATCCTTTCGCGTGTACAGTTTATTTGGGGGAAAAAAGGACAAAGACGAGAATGGTGAAGAAGCACCATCAAAGGCAGGAATTTTCGGAAATATGCAAAATCTTTATGAAACTGTGAAGAAGGCCCAGATGGTTGTCCAAGTTGAGGCTGTCCGGGTGCAAAAGGAGCTTGCAGCGACTGAGATCGATGGTTACTGTGAAGGGGAACTAATCAAGGTAACACTTTCTGGGAACCAGCAGCCCGTAAGAGTTGAAATCACCGAAGCTGCAATGGAAGTGGGTGCTGAAAAACTTTCTGAGCTGGTGAACGACGCCTACAAGGATGCACATCAGAGGAGTGTCCAGGCAATGAAGGAGAGGATGGCTGATCTGGCACAGAGCTTAGGAATGCCAGCAGGCCTTGGTGATGGACTCAAGTGA
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| Protein seq | MAPSTALSPVAFKSSFSPLLFNPTRSKINVEGAFCLPCYNRKKASNRSFRVYSLFGGKKDKDENGEEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIKVTLSGNQQPVRVEITEAAMEVGAEKLSELVNDAYKDAHQRSVQAMKERMADLAQSLGMPAGLGDGLK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.766392 | 8.526490 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0180200 | RBH | 16.829994 | 15.409639 | 18.454491 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08380 | RBH | 9.475318 | 8.540934 | 3.907258 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0180200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0006220 | RBH | 3.707161 | 23.738306 | 17.002504 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0006330 | RBH | 1.175849 | 8.845290 | 9.806098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0006140 | RBH | 6.734042 | 16.892138 | 23.798004 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006070 | RBH | 0.582309 | 0.394116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006100 | RBH | 24.939529 | 24.706135 | 46.534298 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0076300 | RBH | 60.2603455 | 31.662341 | 74.7846715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006080 | RBH | 3.264519 | 2.036768 | 3.279451 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0078300 | RBH | 19.973714 | 8.3037305 | 13.437207 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006490 | RBH | 1.140075 | 0.535902 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0006360 | RBH | 25.050264 | 22.703356 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006310 | RBH | 5.822922 | 1.571043 | 4.275171 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0006080 | RBH | 2.408729 | 10.140019 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G006240 | RBH | 1.818932 | 7.429115 | 6.829631 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0006190 | RBH | 8.469789 | 53.249203 | 19.061554 |
