Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_01g0047990 | OGI:01126780 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr01:44691212-44693738 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGTCACCGTTCTCTTGCTGCTGCTGCTTCTGCTTCTGCGCCGCCACCACAAATGCCGCCCTCGTTCCACTTCCATTGGCGCCACCATGCTGCTCGTCGCCTCTCCTCCACCACCGCCTGCCTCCATCCACCTCCACTGCAACCTCCTCGAGCGTCGGCGTCGGCGTCGGCGTCGCTCCTCCTCCAGCTACAGGACCACATCGCCAGCGGCCACCTCTCCCGCGCTCACCACCTGTTCGATCAAATCCCCAGCCCGGACGTTCGCACCTACAACGACCTCATCCGAGCCTACTCCTCCTCCTCACCGACCGCCGCTGCGGATGGCCTCCACCTATACCGCCGTATGCTCCGCCACCGCGTCGCCCCTAACAACTACACCTTCCCCTTCGCCCTCAAGGCCTGCTCTGCGCTGGCCGACCACCACTGCGGCCGCGCCATCCACCGCCACGCCATCCACGCGGGCCTCCAGGCCGACCTTTTCGTCTCCACCGCCCTCCTCGACATGTACGTCAAGTGCGCTTGCCTACCCGACGCCGCCCACATCTTCGCCACCATGCCCGCCAGGGATCTCGTCGCCTGGAACGCCATGCTTGCCGGCTACGCGCACCATGGCATGTACCACCACGCGGTTGCTCACCTCCTCAGCATGCAGATGCAGATGCATCGGCTCAGGCCCAACGCCTCCACCCTCGTGGCGCTCCTTCCGCTCCTTGCCCAGCAGGGGGCGCTCGCCCAGGGCACCAGCGTCCACGCCTACCGCATTCGTGCCTGCCTCCACTCCAACCGCAACAGCAAGAGCAAGCTGACGGACGGGGTGCTCCTCGGCACCGCGCTCCTGGATATGTACGCAAAGTGCGGGAGCCTGCTCTATGCTCGCAGGGTGTTCGATGCCATGCCTGCCAGGAACGAGGTCACCTGGAGCGCACTTATCGGAGGCTTTGTGCTGTGCAGCAGAATGACCCAGGCCTTCCTTCTGTTCAAGGCCATGCTAGCCCAGGGCCTCTGCTTTCTTTCTCCCACTTCCATTGCCAGTGCTCTCAGGGCCTGCGCCTCCCTCGACCATCTCCGTATGGGTGAACAGCTGCATGCTTTGCTTGCTAAATCTGGTGTCCACGCCGACTTGACTGCAGGGAACTCACTTCTCTCGATGTACGCCAAGGCTGGCTTGATTGACCAGGCAATAGCTTTGTTTGATGAGATGGCCGTCAAGGACACTGTCTCCTACAGTGCGCTTGTATCAGGGTATGTGCAGAATGGCAGGGCAGAGGAGGCGTTCCTTGTCTTCAAGAAGATGCAGGCATGCAATGTAGAACCAGATGCTGCAACAATGGTCTCGCTCATCCCAGCTTGCTCACACCTGGCGGCTTTGCAGCATGGAAGGTGCAGTCATGGTTCTGTCATAATCCGTGGACTCGCATCAGAGACTTCTATATGCAACGCGTTAATAGATATGTACGCAAAGTGTGGGCGGATCGATCTCTCCAGGCAGGTTTTCAACATGATGCCATCTCGGGATATTGTGTCATGGAATACTATGATTGCAGGATATGGAATCCATGGACTAGGGAAAGAAGCCACTGCATTGTTCTTAGAGATGAATAATCTAGGTTTTCCACCAGATGGTGTCACATTCATCTGCTTACTTTCGGCTTGCAGCCATTCTGGACTTGTGATTGAAGGGAAGCACTGGTTTCATGTGATGAGACACGGGTATGGTCTAACTCCCAGGATGGAGCACTATATCTGCATGGTTGATCTTTTGTCAAGAGGTGGTTTCCTCGATGAAGCCTACGAATTTATCCAGAGCATGCCACTGAGAGCAGATGTTCGTGTGTGGGTAGCCTTGCTTGGAGCTTGCCGGGTTTATAAGAACATTGATTTAGGAAAGAAGGTGTCAAGGATGATCCAGGAGCTAGGGCCCGAGGGCACCGGCAACTTTGTTTTGCTGTCCAACATATACAGCGCTGCTGGGAGATTCGATGAGGCGGCAGAGGTTCGGATAATACAGAAGGTACAGGGTTTTAAGAAGAGTCCAGGCTGCAGTTGGATTGAGATAAACGGCTCCCTACATGCATTTGTTGGGGGAGACCAATCTCATCCACAATCACCTGAAATATATCGAGAGCTGGATAACATTCTAGTAGGTATTAAGAAACTGGGTTACCAGCCCGATACCAGTTTTGTTTTGCAAGATCTGGAGGAAGAGGAAAAGGAGAAGGCACTCATCTGTCATAGTGAAAAGCTAGCGATAGCCTATGGTATCCTGAGTCTTAGTGAAGATAAGACCATTTTTGTTACTAAGAATCTCCGCGTTTGTGGGGACTGTCATACTGTAATCAAGCACATAAGCTTACTGAAGCGCAGGGCTATCATTGTACGAGATGCTAATAGGTTTCATCATTTCAAGAATGGGCAATGCAGCTGTGGAGATTTTTGGTGACAACACAACGCGTGGTTCAGCTACTGAGCTACGGATTACAATCCGAATCTTGATTTTGAATTTTATAGTTCGATTCAATGATTAA
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| CDS seq | ATGCGTCACCGTTCTCTTGCTGCTGCTGCTTCTGCTTCTGCGCCGCCACCACAAATGCCGCCCTCGTTCCACTTCCATTGGCGCCACCATGCTGCTCGTCGCCTCTCCTCCACCACCGCCTGCCTCCATCCACCTCCACTGCAACCTCCTCGAGCGTCGGCGTCGGCGTCGGCGTCGCTCCTCCTCCAGCTACAGGACCACATCGCCAGCGGCCACCTCTCCCGCGCTCACCACCTGTTCGATCAAATCCCCAGCCCGGACGTTCGCACCTACAACGACCTCATCCGAGCCTACTCCTCCTCCTCACCGACCGCCGCTGCGGATGGCCTCCACCTATACCGCCGTATGCTCCGCCACCGCGTCGCCCCTAACAACTACACCTTCCCCTTCGCCCTCAAGGCCTGCTCTGCGCTGGCCGACCACCACTGCGGCCGCGCCATCCACCGCCACGCCATCCACGCGGGCCTCCAGGCCGACCTTTTCGTCTCCACCGCCCTCCTCGACATGTACGTCAAGTGCGCTTGCCTACCCGACGCCGCCCACATCTTCGCCACCATGCCCGCCAGGGATCTCGTCGCCTGGAACGCCATGCTTGCCGGCTACGCGCACCATGGCATGTACCACCACGCGGTTGCTCACCTCCTCAGCATGCAGATGCAGATGCATCGGCTCAGGCCCAACGCCTCCACCCTCGTGGCGCTCCTTCCGCTCCTTGCCCAGCAGGGGGCGCTCGCCCAGGGCACCAGCGTCCACGCCTACCGCATTCGTGCCTGCCTCCACTCCAACCGCAACAGCAAGAGCAAGCTGACGGACGGGGTGCTCCTCGGCACCGCGCTCCTGGATATGTACGCAAAGTGCGGGAGCCTGCTCTATGCTCGCAGGGTGTTCGATGCCATGCCTGCCAGGAACGAGGTCACCTGGAGCGCACTTATCGGAGGCTTTGTGCTGTGCAGCAGAATGACCCAGGCCTTCCTTCTGTTCAAGGCCATGCTAGCCCAGGGCCTCTGCTTTCTTTCTCCCACTTCCATTGCCAGTGCTCTCAGGGCCTGCGCCTCCCTCGACCATCTCCGTATGGGTGAACAGCTGCATGCTTTGCTTGCTAAATCTGGTGTCCACGCCGACTTGACTGCAGGGAACTCACTTCTCTCGATGTACGCCAAGGCTGGCTTGATTGACCAGGCAATAGCTTTGTTTGATGAGATGGCCGTCAAGGACACTGTCTCCTACAGTGCGCTTGTATCAGGGTATGTGCAGAATGGCAGGGCAGAGGAGGCGTTCCTTGTCTTCAAGAAGATGCAGGCATGCAATGTAGAACCAGATGCTGCAACAATGGTCTCGCTCATCCCAGCTTGCTCACACCTGGCGGCTTTGCAGCATGGAAGGTGCAGTCATGGTTCTGTCATAATCCGTGGACTCGCATCAGAGACTTCTATATGCAACGCGTTAATAGATATGTACGCAAAGTGTGGGCGGATCGATCTCTCCAGGCAGGTTTTCAACATGATGCCATCTCGGGATATTGTGTCATGGAATACTATGATTGCAGGATATGGAATCCATGGACTAGGGAAAGAAGCCACTGCATTGTTCTTAGAGATGAATAATCTAGGTTTTCCACCAGATGGTGTCACATTCATCTGCTTACTTTCGGCTTGCAGCCATTCTGGACTTGTGATTGAAGGGAAGCACTGGTTTCATGTGATGAGACACGGGTATGGTCTAACTCCCAGGATGGAGCACTATATCTGCATGGTTGATCTTTTGTCAAGAGGTGGTTTCCTCGATGAAGCCTACGAATTTATCCAGAGCATGCCACTGAGAGCAGATGTTCGTGTGTGGGTAGCCTTGCTTGGAGCTTGCCGGGTTTATAAGAACATTGATTTAGGAAAGAAGGTGTCAAGGATGATCCAGGAGCTAGGGCCCGAGGGCACCGGCAACTTTGTTTTGCTGTCCAACATATACAGCGCTGCTGGGAGATTCGATGAGGCGGCAGAGGTTCGGATAATACAGAAGGTACAGGCTGTGGAGATTTTTGGTGACAACACAACGCGTGGTTCAGCTACTGAGCTACGGATTACAATCCGAATCTTGATTTTGAATTTTATAGTTCGATTCAATGATTAA
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| Protein seq | MRHRSLAAAASASAPPPQMPPSFHFHWRHHAARRLSSTTACLHPPPLQPPRASASASASLLLQLQDHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQAVEIFGDNTTRGSATELRITIRILILNFIVRFND |
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| Function | Pentatricopeptide repeat-containing protein At3g16610 [UniProtKB/Swiss-Prot:Q9LUS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0047990 | OsKYG_01g0047990.01 | Chr01 | 44691212 | 44693738 | + | NAM | ||
| CDS seq | ATGCGTCACCGTTCTCTTGCTGCTGCTGCTTCTGCTTCTGCGCCGCCACCACAAATGCCGCCCTCGTTCCACTTCCATTGGCGCCACCATGCTGCTCGTCGCCTCTCCTCCACCACCGCCTGCCTCCATCCACCTCCACTGCAACCTCCTCGAGCGTCGGCGTCGGCGTCGGCGTCGCTCCTCCTCCAGCTACAGGACCACATCGCCAGCGGCCACCTCTCCCGCGCTCACCACCTGTTCGATCAAATCCCCAGCCCGGACGTTCGCACCTACAACGACCTCATCCGAGCCTACTCCTCCTCCTCACCGACCGCCGCTGCGGATGGCCTCCACCTATACCGCCGTATGCTCCGCCACCGCGTCGCCCCTAACAACTACACCTTCCCCTTCGCCCTCAAGGCCTGCTCTGCGCTGGCCGACCACCACTGCGGCCGCGCCATCCACCGCCACGCCATCCACGCGGGCCTCCAGGCCGACCTTTTCGTCTCCACCGCCCTCCTCGACATGTACGTCAAGTGCGCTTGCCTACCCGACGCCGCCCACATCTTCGCCACCATGCCCGCCAGGGATCTCGTCGCCTGGAACGCCATGCTTGCCGGCTACGCGCACCATGGCATGTACCACCACGCGGTTGCTCACCTCCTCAGCATGCAGATGCAGATGCATCGGCTCAGGCCCAACGCCTCCACCCTCGTGGCGCTCCTTCCGCTCCTTGCCCAGCAGGGGGCGCTCGCCCAGGGCACCAGCGTCCACGCCTACCGCATTCGTGCCTGCCTCCACTCCAACCGCAACAGCAAGAGCAAGCTGACGGACGGGGTGCTCCTCGGCACCGCGCTCCTGGATATGTACGCAAAGTGCGGGAGCCTGCTCTATGCTCGCAGGGTGTTCGATGCCATGCCTGCCAGGAACGAGGTCACCTGGAGCGCACTTATCGGAGGCTTTGTGCTGTGCAGCAGAATGACCCAGGCCTTCCTTCTGTTCAAGGCCATGCTAGCCCAGGGCCTCTGCTTTCTTTCTCCCACTTCCATTGCCAGTGCTCTCAGGGCCTGCGCCTCCCTCGACCATCTCCGTATGGGTGAACAGCTGCATGCTTTGCTTGCTAAATCTGGTGTCCACGCCGACTTGACTGCAGGGAACTCACTTCTCTCGATGTACGCCAAGGCTGGCTTGATTGACCAGGCAATAGCTTTGTTTGATGAGATGGCCGTCAAGGACACTGTCTCCTACAGTGCGCTTGTATCAGGGTATGTGCAGAATGGCAGGGCAGAGGAGGCGTTCCTTGTCTTCAAGAAGATGCAGGCATGCAATGTAGAACCAGATGCTGCAACAATGGTCTCGCTCATCCCAGCTTGCTCACACCTGGCGGCTTTGCAGCATGGAAGGTGCAGTCATGGTTCTGTCATAATCCGTGGACTCGCATCAGAGACTTCTATATGCAACGCGTTAATAGATATGTACGCAAAGTGTGGGCGGATCGATCTCTCCAGGCAGGTTTTCAACATGATGCCATCTCGGGATATTGTGTCATGGAATACTATGATTGCAGGATATGGAATCCATGGACTAGGGAAAGAAGCCACTGCATTGTTCTTAGAGATGAATAATCTAGGTTTTCCACCAGATGGTGTCACATTCATCTGCTTACTTTCGGCTTGCAGCCATTCTGGACTTGTGATTGAAGGGAAGCACTGGTTTCATGTGATGAGACACGGGTATGGTCTAACTCCCAGGATGGAGCACTATATCTGCATGGTTGATCTTTTGTCAAGAGGTGGTTTCCTCGATGAAGCCTACGAATTTATCCAGAGCATGCCACTGAGAGCAGATGTTCGTGTGTGGGTAGCCTTGCTTGGAGCTTGCCGGGTTTATAAGAACATTGATTTAGGAAAGAAGGTGTCAAGGATGATCCAGGAGCTAGGGCCCGAGGGCACCGGCAACTTTGTTTTGCTGTCCAACATATACAGCGCTGCTGGGAGATTCGATGAGGCGGCAGAGGTTCGGATAATACAGAAGGTACAGGCTGTGGAGATTTTTGGTGACAACACAACGCGTGGTTCAGCTACTGAGCTACGGATTACAATCCGAATCTTGATTTTGAATTTTATAGTTCGATTCAATGATTAA
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| Protein seq | MRHRSLAAAASASAPPPQMPPSFHFHWRHHAARRLSSTTACLHPPPLQPPRASASASASLLLQLQDHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQAVEIFGDNTTRGSATELRITIRILILNFIVRFND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.844667 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0977400 | RBH | 0.275101 | 0.444914 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74600 | RBH | 0.194314 | 0.264258 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0977400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0049100 | RBH | 0.089443 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048620 | RBH | 0.0 | 0.519521 | 0.307742 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048980 | RBH | 0.197623 | 1.049656 | 0.211288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048540 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0048030 | RBH | 0.491229 | 0.0 | 2.444151 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0710400 | RBH | 0.436325 | 0.54623 | 0.26626 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047500 | RBH | 0.090956 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0711700 | RBH | 0.519945 | 0.58074 | 2.3387015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0048200 | RBH | 0.039004 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0048270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0048240 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0048010 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G048320 | RBH | 0.0 | 0.0 | 0.279294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0048080 | RBH | 0.000000 | 0.0 | 0.0 |
