Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_01g0044890 | OGI:01120240 | 11/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr01:42631455-42631994 | ||||||||
| Gene Symbol | IG1, CRL1L3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2 | ||||||||||
| DNA seq | TCCTCCTCTCTCACATTCTCCTCGTTCTCGTTGCCATCGCAGTGCTGCATCTGGCTGCAGAGGATCTCGCCCTGTGCGACGGCGAGCTGCATCTGCAGCTGTGACACCTGGTTCTGCAGGAAGGAGATGGCCCCGGCCCGACGCAACCGTAGACTGGGTCCCGTATCCGGTCGTTCGCCTCGTACACCAGGCTGCTCACCGCGTCGCCTTGCTGTTGCGCCGGTAGCTCCTGCATTGGAAACACGCATCAGACGCAAGCATGCATGCACGGTGGCGCGGGCGCCGCCATTGATGACGACCTTATACGTGTTCGTGCATAGGCCATGCAATGCCAATGGACATATATATATGTATGTTGGGTAAGAAGAAGTCTGATTTAATATACTGGAGCATCTTGCTAACATTGATGGCGCCGAAGACCTTGTGGACGATGGCGAACTTGTGGGGGTCGTCGGCGGGGAAGAAGGGCGCGAAGATGCAGTCCTTGGTGCACCGCCGCCGCAGCAGCTTGCACGACGCGCACGGCGACCCACTGCCCAT
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| CDS seq | ATGGGCAGTGGGTCGCCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCATCAATGAGCTACCGGCGCAACAGCAAGGCGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGACCGGATACGGGACCCAGTCTACGGTTGCGTCGGGCCGGGGCCATCTCCTTCCTGCAGAACCAGGTGTCACAGCTGCAGATGCAGCTCGCCGTCGCACAGGGCGAGATCCTCTGCAGCCAGATGCAGCACTGCGATGGCAACGAGAACGAGGAGAATGTGA |
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| Protein seq | MGSGSPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINELPAQQQGDAVSSLVYEANDRIRDPVYGCVGPGPSPSCRTRCHSCRCSSPSHRARSSAARCSTAMATRTRRM |
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| Function | LOB domain-containing protein 12 [UniProtKB/Swiss-Prot:Q8LBW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0044890 | OsKYG_01g0044890.01 | Chr01 | 42631455 | 42631994 | - | NAM | ||
| CDS seq | ATGGGCAGTGGGTCGCCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAGGTCTTCGGCGCCATCAATGAGCTACCGGCGCAACAGCAAGGCGACGCGGTGAGCAGCCTGGTGTACGAGGCGAACGACCGGATACGGGACCCAGTCTACGGTTGCGTCGGGCCGGGGCCATCTCCTTCCTGCAGAACCAGGTGTCACAGCTGCAGATGCAGCTCGCCGTCGCACAGGGCGAGATCCTCTGCAGCCAGATGCAGCACTGCGATGGCAACGAGAACGAGGAGAATGTGA
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| Protein seq | MGSGSPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINELPAQQQGDAVSSLVYEANDRIRDPVYGCVGPGPSPSCRTRCHSCRCSSPSHRARSSAARCSTAMATRTRRM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0889400 | SBH | 0.161151 | 0.0 | 1.208444 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66590 | SBH | 0.097005 | 0.0 | 0.402939 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0169400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043090 | SBH | 0.000000 | 0.0 | 0.410490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042670 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0045870 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045390 | SBH | 0.569320 | 0.697768 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0044970 | SBH | 5.269920 | 11.945391 | 18.575041 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0672700 | RBH | 0 | 0.017619 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0674500 | RBH | 9.8974255 | 12.7697325 | 16.5199395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044950 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045000 | RBH | 0.0 | 0.0 | 0.0 |
