Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_01g0027090 | OGI:01082850 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr01:28683338-28686019 | ||||||||
| Gene Symbol | WRKY16, OsWRKY16 | ||||||||||
| DNA seq | TCCATTAATGGAGCTATATAGGAGAAGATCAATGTAAAGTTTGCATAAAATTATCATGGCTCGTATGGTCAGTCCTGCAACCTGCTGGGTGCAATGCTGGAGCCTGGGAATTAATTAGGCGCTTACATGTACAAGAAGTGCTTAGTACTAGAGCTAGGTAGAGCTAGCTAGTAAGAGCATAGAAATGATACGAGACCCAGTAGAAAACCCTGTACCATCTCGCAGCACGAAAGAAAAAAACAAAATCAAGAAACGAAACAGAAGGTGATCATTTGGGGGGAAAAAAGATGTAACGAGATGTTAATTAATTAAACAGCATGATCGATCGAGAGCCAAATGACCTCTTGTCTAGCTAGTCTGATGATTAATTCAGCTTCAGATTGATGGTGGTCGTCGCGTCAAGGCTGGTTGGTGCCGTGGATGAAGGACGGCAGCAGCATGTCCTGCAGGAGGCCCAAGTCTTGCGCCATGAAGTGCTGCATCTGGAGCGCCGCCGGTGACGACGGCTGAGCCGAGGCGGCGACGGTGACCGCGCTCGTCGTCTCGCTCGAGACGCCGCCGCCGCCGCTGATTGCACTGTTAAGGCCATGGCTCGTCGTCGTCGTCGCCGCGGCGCCGCCCATCGTAGTCATGCCGTGGTGGGCGGCGGCGGCGCGCGGCAGGAAGCTGCTCAGCACGTCGATGCCGGACGACCGGCCGAACTGCGCGGCGGCGCCGGAGCCCAGCGGCAACGGCGGCGCCATGCCGTGGTGTCCGTGGTGGCCGTGGTGGTGGTGCAGCTGGTGCGCGGCCGCCGCCGCCGCGGACGCCTGCGCGTGCGCGGCGAGCAGGTGCGTGCTGCCGCGGAGCGTGGCCGGGATGGGGTGCGTGTGCTTGCCCTCGTACGTGGTGATCACCACCGCCGGGTCCTGGTACGACCGCTCCACCCGCTTCTTCACCGGGCACTTCTGCGTCGTGCACCTGTAGTAGCTCCTGCAAAAAAATCAACCCCGTATATATCAGATCATTGCAATCATCGCATTCTGCCGCGCGCGCGCGCGTCCGGTGCAACTACTGCGGCCGGTACACGTACACGCGCACAGCTACGAGTCACGTACTATACGTGTGTGTAACTGTACATACGTACCTGGGGTATGGGCTGTTCTTGACGGCCTTCTGGCCGTACTTGCGCCACCGGTAGCCGTCCTCGAGGTGGTCGACCTCGCTCTTGGTCATGAACGCGAACCGCGGCTGCCTCGCCCGCTTCTCCCCCTTCCCCGCCTTCCCTCCCTTCGCCGCCGACCTGCACCCATCCAATCCATACCATATTACCAATCAGCTCGCGATCGATCGGTACGTTTCTCCGCGTCAAAAGCGGCGGAATTTCGTATGTCGTCCGGCAAGCGACGGCCACGGCCGGGATCGATCCCGTTCAAACTGGGTAGACACACGCGACTACGCGAGCGTGTGTGTACACAAGGTTAGGGGGTTCACACCGTGTCTGGCACAGTGGCACTGGCCTAGCTTTCTCGTGATGGCGCCCCCTTTTCGGCTCACACTGGATTCTACTGTTGGTAGCTGGAGATTGCACTGAAAAGGAAGCTGCTGGCAAGATCCAAGTAGCAGAATGGGGTGGTGGATAACACTGGCATGCTTATTGTCTAGGGATCAATCTACTTTGCTTTTCTTTTATTCCTATCTACCCTTTTTGGGCATAATCTTTGGTAAAAGGGGATCAAAGACAAAAGTTACAAAGATCTTTGGTCATGTTGGAACTTGGAAGAAGGTGTGAAGAATGAAGGAACTAGCAGTAGCAGGCAGGTAATCAAGAAAAGCAAAACAAAGATCAGAGGGGCTAGCTGATACATTAAACGACTTATTTTAATAAAACATTATGGCAAGGTTTTAAATTTTTTGGAAGAAAGTGTGTGAGGCATGCAAGCTGAGTGTGAAACCCTAGATATGTTCACACGTTTGCCAAACTACCTTAAAAAGGAATAAAAGAACAAAAAGAGGAGGAATAGAAGAATGAATGAATGAATGAATGGAAGAAAGAAAGAATGACCACCAAGCAAAGCAAGGAAGCAAAATCTAGCCCACAGAAAACCGGCCCCAAATCTTGATACCGGATCAGCAAAAAAAAGAAGCTCCAAATGATCTCATCCTAATGAATTATTAGCAACTAAGATCAAGAACTTGGCAAAATGACCCAAGATTTCAAGGGAAAAAAGGAGAAAAAAAGGAGAGAATTTAATGGTGAAGTGGCCTAACTCACCCTTTCTTGTTCTTGTGTCCTTCATCTTCTTCTCCCTTGCCTTCCTCTTTGTTCTCATCCTCCTCCTTCTTGCACCTTGCCGGCGACTCCTCCTCCCCGGCGCCGGCGCCGGCGCCGCCTCCACCTCCTCCACCAACCCCCTCGCTCGACGACGTCGACATCGACGACGTCGTGTTCGGCGTCAGAGGCGGCGCCCCGCCGCCGCCGGCCGCGACGACGTCCACCACCCCGACCTCCCTCTTGACGTCCTCCCCGACCGGCAGCTCCAGCGCGCGGCACATCAGGTCGTAGTCCATCTGCATCGGCGTCCCCGCCTGCAGGTAGTCGGCGAACCACGACGACGGCAGCATCTGCATCTCCCCCGCGCCGCCCCCCGGCCGCGCGAACAGCGGCGCCAGCTCGTCCTGGAACTGGTACTCGCCCGACAT
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| CDS seq | ATGTCGGGCGAGTACCAGTTCCAGGACGAGCTGGCGCCGCTGTTCGCGCGGCCGGGGGGCGGCGCGGGGGAGATGCAGATGCTGCCGTCGTCGTGGTTCGCCGACTACCTGCAGGCGGGGACGCCGATGCAGATGGACTACGACCTGATGTGCCGCGCGCTGGAGCTGCCGGTCGGGGAGGACGTCAAGAGGGAGGTCGGGGTGGTGGACGTCGTCGCGGCCGGCGGCGGCGGGGCGCCGCCTCTGACGCCGAACACGACGTCGTCGATGTCGACGTCGTCGGCGGCGAAGGGAGGGAAGGCGGGGAAGGGGGAGAAGCGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGACGGCTACCGGTGGCGCAAGTACGGCCAGAAGGCCGTCAAGAACAGCCCATACCCCAGGAGCTACTACAGGTGCACGACGCAGAAGTGCCCGGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCGGCGGTGGTGATCACCACGTACGAGGGCAAGCACACGCACCCCATCCCGGCCACGCTCCGCGGCAGCACGCACCTGCTCGCCGCGCACGCGCAGGCGTCCGCGGCGGCGGCGGCCGCGCACCAGCTGCACCACCACCACGGCCACCACGGACACCACGGCATGGCGCCGCCGTTGCCGCTGGGCTCCGGCGCCGCCGCGCAGTTCGGCCGGTCGTCCGGCATCGACGTGCTGAGCAGCTTCCTGCCGCGCGCCGCCGCCGCCCACCACGGCATGACTACGATGGGCGGCGCCGCGGCGACGACGACGACGAGCCATGGCCTTAACAGTGCAATCAGCGGCGGCGGCGGCGTCTCGAGCGAGACGACGAGCGCGGTCACCGTCGCCGCCTCGGCTCAGCCGTCGTCACCGGCGGCGCTCCAGATGCAGCACTTCATGGCGCAAGACTTGGGCCTCCTGCAGGACATGCTGCTGCCGTCCTTCATCCACGGCACCAACCAGCCTTGA
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| Protein seq | MSGEYQFQDELAPLFARPGGGAGEMQMLPSSWFADYLQAGTPMQMDYDLMCRALELPVGEDVKREVGVVDVVAAGGGGAPPLTPNTTSSMSTSSAAKGGKAGKGEKRARQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHPIPATLRGSTHLLAAHAQASAAAAAAHQLHHHHGHHGHHGMAPPLPLGSGAAAQFGRSSGIDVLSSFLPRAAAAHHGMTTMGGAAATTTTSHGLNSAISGGGGVSSETTSAVTVAASAQPSSPAALQMQHFMAQDLGLLQDMLLPSFIHGTNQP |
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| Function | WRKY transcription factor 28 [UniProtKB/Swiss-Prot:Q8VWJ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0027090 | OsKYG_01g0027090.01 | Chr01 | 28683338 | 28686019 | - | NAM | ||
| CDS seq | ATGTCGGGCGAGTACCAGTTCCAGGACGAGCTGGCGCCGCTGTTCGCGCGGCCGGGGGGCGGCGCGGGGGAGATGCAGATGCTGCCGTCGTCGTGGTTCGCCGACTACCTGCAGGCGGGGACGCCGATGCAGATGGACTACGACCTGATGTGCCGCGCGCTGGAGCTGCCGGTCGGGGAGGACGTCAAGAGGGAGGTCGGGGTGGTGGACGTCGTCGCGGCCGGCGGCGGCGGGGCGCCGCCTCTGACGCCGAACACGACGTCGTCGATGTCGACGTCGTCGGCGGCGAAGGGAGGGAAGGCGGGGAAGGGGGAGAAGCGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGACGGCTACCGGTGGCGCAAGTACGGCCAGAAGGCCGTCAAGAACAGCCCATACCCCAGGAGCTACTACAGGTGCACGACGCAGAAGTGCCCGGTGAAGAAGCGGGTGGAGCGGTCGTACCAGGACCCGGCGGTGGTGATCACCACGTACGAGGGCAAGCACACGCACCCCATCCCGGCCACGCTCCGCGGCAGCACGCACCTGCTCGCCGCGCACGCGCAGGCGTCCGCGGCGGCGGCGGCCGCGCACCAGCTGCACCACCACCACGGCCACCACGGACACCACGGCATGGCGCCGCCGTTGCCGCTGGGCTCCGGCGCCGCCGCGCAGTTCGGCCGGTCGTCCGGCATCGACGTGCTGAGCAGCTTCCTGCCGCGCGCCGCCGCCGCCCACCACGGCATGACTACGATGGGCGGCGCCGCGGCGACGACGACGACGAGCCATGGCCTTAACAGTGCAATCAGCGGCGGCGGCGGCGTCTCGAGCGAGACGACGAGCGCGGTCACCGTCGCCGCCTCGGCTCAGCCGTCGTCACCGGCGGCGCTCCAGATGCAGCACTTCATGGCGCAAGACTTGGGCCTCCTGCAGGACATGCTGCTGCCGTCCTTCATCCACGGCACCAACCAGCCTTGA
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| Protein seq | MSGEYQFQDELAPLFARPGGGAGEMQMLPSSWFADYLQAGTPMQMDYDLMCRALELPVGEDVKREVGVVDVVAAGGGGAPPLTPNTTSSMSTSSAAKGGKAGKGEKRARQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHPIPATLRGSTHLLAAHAQASAAAAAAHQLHHHHGHHGHHGMAPPLPLGSGAAAQFGRSSGIDVLSSFLPRAAAAHHGMTTMGGAAATTTTSHGLNSAISGGGGVSSETTSAVTVAASAQPSSPAALQMQHFMAQDLGLLQDMLLPSFIHGTNQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.378881 | 1.171533 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0665500 | RBH | 0.351489 | 0.307593 | 1.637980 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47560 | RBH | 0.366302 | 0.383325 | 0.269200 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0665500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028250 | RBH | 0.135214 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027780 | RBH | 0.000000 | 0.0 | 0.449640 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028220 | RBH | 0.299749 | 0.000000 | 2.177916 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027450 | RBH | 0.090332 | 0.167933 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027220 | RBH | 0.744550 | 0.000000 | 5.008989 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0453400 | RBH | 1.498773 | 12.807175 | 1.3453845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026920 | RBH | 0.000000 | 0.000000 | 0.175023 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0442200 | RBH | 2.0572725 | 18.800171 | 0.483275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027170 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024590 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027400 | RBH | 0.000000 | 3.949854 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027490 | RBH | 0.240323 | 0.000000 | 0.070975 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027290 | RBH | 0.239849 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027670 | RBH | 0.162616 | 0.000000 | 1.194316 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027420 | RBH | 0.000000 | 10.984376 | 1.657365 |
