Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_01g0010320 | OGI:01026080 | 15/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr01:8559333-8563683 | ||||||||
| Gene Symbol | OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2, OsSK12, SK12 | ||||||||||
| DNA seq | ATTTCGGTTTCGGAGAGAGAGAGAGAGGATTTTTTTTTCCTTCGGCTTATGTAGTATTGCGCTGCGTCCCGACAAGCAAAAGCAAGAGGAGGAGGCCGCGGCTAGCGAGCGAGCGAGAGAGAGGGGAGAAGAAGAGGTGGGACAGCCGGGAGATCCATCCCTGTGGAGAGGAGGGAGGGAGGAAGGAGGCGTTGGAGGAGGAGAGGTGCGTTGCGGTTTGTTCGTTCTTGCTGCTTCGATTTGGTTTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTTGTGGTTTGAGGCGATTACAACGCGAGTTCGCCGTTCTGCGAGGGCGGTGGCTGATCCGTCTGCTGGGATCTACGTTTTCTTCGCGGTTTCGGTGGATTTTGCGGGGGTTTCGGGGATTCTTGAGACGTCGGTGTGTTGCGGTTGTGTTCAAACCTCCCAAGCGCGTGGATTCTTTTTGGGGGGTCTCTAATTTGTGTCGGCGATTAGTCAACGTGGAGCAATTATACGGATTTCCGAGGGATTTTCTGGTATTTATTGCTGCAAATCGGGCAAGTTCTTGGCTTCGGATGGGGCTTGGAGTAAAGATAGATCATTTACGCCATAGATTCGTACCCAAATGCTCAGTTTTTTTTATTGGTTTGCACTTTCCCCTTCGTTAGAGGCTCGTATGCTCGCGCCTGCCTCATAGCAGATGCGGATGAGTTCAAACTCAAGAATAGATGCAGAAGAGAGCCTGAATCAGGAGGAGTTCGTCAAGAAACGTGAACAGGGTGCAGGGATCCCTATTTTGGCTTGATTGAAGGCGGTTTTGGAGGGGGAAAGTTGCTTAGCTGAACAACATTTTTGCGCATAGCAGCAAACTGTTGCTTGTGTTGGAGCCGACGGCAATGAAAGAATGCCTTTTTTGTAGCTGGTTTTGGACATAAAGAGTATTTTTTATGGTTGCTTTCTTGCTAAAAATATGGTGTTTTAGTGCAAGTCATTCAGTGTAAATCTCCAAGCATTCTTATATACTTGTTCCTTTTCCTCCTCCTGGATGAGTCTTGGATGAGTGCATTTCTCTCTGTTCATCTCTTTGCTCTTCACCTGATGATTGTTTCATGGTGGATGCGTGTTAGATGCACTGAGTTGCTTAGCATGGTGAATCAGTGCTTTGTGAACTGCGTGGTTCCACTTTTTAACTGATGTTTGTTATTGACGATCTCGCAGGTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCGCCATCGTTTAGCTTTTTATAAGAGATGGGTTCAGTAGGGGTTGCGCCGTCTGGGTTAAAGAACAGCAGTAGCACCAGCATGGGTGCTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGGTAAGTCTATCATGATGAGAAGTTTAATTTCTTCCATGTGCCATGTAAATTTGACTTTGTTGTAACATGTCGAACTGAATGGTAAATCCAGGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAGGTGATTTCCTGATACCATGTTGTGATTTCAGAACAAATGCCATCTGACTGTCGCGATCTGAAATTGTTCATCGATTATAAAGCAATCTTCATTTCTAATTGATATTCTTGGATAATCTTGCAGACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGGTTAGTTGCAACATCTTTGGGTTTTCATATATTTCACCAATCACCAGGAAGCTAAGTAGCTAACTTAACATCATTAACTCTACTAGCACCACTTTTTTTGTATGTAGCAAATTGTTGATACACGATAACCTTCTCTTGTTAAGATGTCCTAAATGTTCTTCATGTCTGTAATAGTGATATCATTTTGACCATTTTCAGGCAAAATGTCTGGAGACAGGTGAGACAGTTGCTATCAAGAAGGTTCTTCAGGATAAGCGCTACAAGAACCGTGAGCTTCAGACCATGCGCCTTCTTGACCACCCAAATGTTGTAGCTCTGAAGCACTGTTTCTTCTCTACAACTGAGAAGGATGAACTGTATCTAAACTTGGTTCTTGAGTATGTGCCTGAAACTGTTCATCGTGTTGTGAAGCATTACAACAAGATGAACCAGCGTATGCCACTTATCTATGTGAAGCTGTATATGTACCAGGTAATATTCTGTTATGTACCTTTTTGGATACTTTGTTCTTTTGACTTATGTTGTGTAGCAGGCTATATTCAGACAAACTAGCCAGTAGCATACCGAGATGACTTTGAATTTAGTTTGAAATTTGTTGACAGATTTGTAGGGCATTAGCTTACATCCATAATAGCATCGGAGTTTGCCACAGAGATATCAAGCCACAGAATCTTCTGGTATGCTTGAATGTTGTTACCCATTCATCTCAAATACCACCCTCTTATTTCTGTAACTTTATAATTGATGTTTGAACTTCTAATCAGGTAAACCCACATACCCATCAACTCAAGCTATGTGACTTTGGGAGTGCAAAAGTTCTGGTAAGACAATTAAGAAATCCACAACTTGTTATATTATAAGCAGTTACAGTCTGGTCTTATCCTCCCTATGTACTAATTTGTAGGTCAAGGGAGAACCGAACATATCGTACATTTGCTCCCGATACTATAGGGCTCCGGAGCTCATATTTGGTGCCACCGAATACACTACAGCTATTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGGTAAGCGGCTGGATTTTCTTTGCACATTTTGGGGAAGTTTGTTGTTTACCACCCTGGACTCTATTGTCGAAGTCGGTATGCCTTACAATTGTTTTCTGTTCGACAGCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGGTTAGTGCCAATTCTGGTGTTTAGTTGGCCTTGCGAGTTGTTCGGAGGTGCAGAAGTTTGTAACATTAAAACTGATCACACATCGCAGGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGGTGCAAAGTCTATCTATTTCTGTTGTTATACTTTCAGCAATCGTCCAGTATCAGGTGATTAACCATATATGTAAAATATTTAGGTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTGTAAGTATATATTTAATGGTTGAAGTACAGATAAATTAGTATTATGGCACTTAGTTCCTGAGATAATTGTGCAGACATTCATTTCATAAATATTTTCTGTTACCTTTGACCAGGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGGTAAGTTGTGAAACATGATCACATTTATCCTTGTTGATATTACCAGTTAAAGTTTGTTCAAGCAGGCACTTCAATTGTTCTGGTTATTTCCGTTGTAAACTTACAATTTGGGAGCTGCAAGTCATAACTTTCTGATATGATCAGCTACTTACGTTGCCCCTTTCTTGTTTCTTGCAGAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGAGACAGCTTCCGCACGACCCCCCTGGAAATTTCCATGACAAGTGCCCATTTCCTCCCCCCTGGACGACGATGGATCGTCAGCATATGCGTGCATGATGGTTGGTGAAGATGTGAAGTTACGTTGTTGTTGTATGACCACCTTGTTGACCAGTGTAGTTGAGTAGCAGTATGTTGCGATGGCGAAACTTTGACATGTAACCGGTGCACCCACACCATCCCTCCCCTACTAACCCTCACCCACCTGAGAATTGAGAATTCCCATAGCTGATGATCTGTAATATGTTCTAGAGCAGTTTAAGAATGTATTTATTATGGTGTAGTTGATCCATATGTTGGGATCCTCCTCGTCGATTTTCTTGGTTCTTTGTGCCCTAGACTGCTACCTGGTTTTTAGACTGTTCTGAAAATGCTGCTAGTACCTTCTATCTACTGTACTTGTTTGCTCCTTGGTGCTATTGCTCCAGCCTCAGCTATGAGGATGCTCTGGCATATGAACGTATGGACAAGTTCGTCGATGACCTGACCTTGGTA
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| CDS seq | ATGGGTTCAGTAGGGGTTGCGCCGTCTGGGTTAAAGAACAGCAGTAGCACCAGCATGGGTGCTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAGACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGGCAAAATGTCTGGAGACAGGTGAGACAGTTGCTATCAAGAAGGTTCTTCAGGATAAGCGCTACAAGAACCGTGAGCTTCAGACCATGCGCCTTCTTGACCACCCAAATGTTGTAGCTCTGAAGCACTGTTTCTTCTCTACAACTGAGAAGGATGAACTGTATCTAAACTTGGTTCTTGAGTATGTGCCTGAAACTGTTCATCGTGTTGTGAAGCATTACAACAAGATGAACCAGCGTATGCCACTTATCTATGTGAAGCTGTATATGTACCAGATTTGTAGGGCATTAGCTTACATCCATAATAGCATCGGAGTTTGCCACAGAGATATCAAGCCACAGAATCTTCTGGTAAACCCACATACCCATCAACTCAAGCTATGTGACTTTGGGAGTGCAAAAGTTCTGGTCAAGGGAGAACCGAACATATCGTACATTTGCTCCCGATACTATAGGGCTCCGGAGCTCATATTTGGTGCCACCGAATACACTACAGCTATTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGGTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGA
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| Protein seq | MGSVGVAPSGLKNSSSTSMGAEKLPDQMHDLKIRDDKEVEATIINGKGTETGHIIVTTTGGRNGQPKQTVSYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVVKHYNKMNQRMPLIYVKLYMYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRLPPEAVDLVSRLLQYSPNLRCTAVEALVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGIPSDIMAKLIPEHVKKQCSYAGV |
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| Function | Glycogen synthase kinase-3 homolog MsK-3 [UniProtKB/Swiss-Prot:P51139] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0010320 | OsKYG_01g0010320.01 | Chr01 | 8559333 | 8563683 | + | NAM | ||
| CDS seq | ATGGGTTCAGTAGGGGTTGCGCCGTCTGGGTTAAAGAACAGCAGTAGCACCAGCATGGGTGCTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAGACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGGCAAAATGTCTGGAGACAGGTGAGACAGTTGCTATCAAGAAGGTTCTTCAGGATAAGCGCTACAAGAACCGTGAGCTTCAGACCATGCGCCTTCTTGACCACCCAAATGTTGTAGCTCTGAAGCACTGTTTCTTCTCTACAACTGAGAAGGATGAACTGTATCTAAACTTGGTTCTTGAGTATGTGCCTGAAACTGTTCATCGTGTTGTGAAGCATTACAACAAGATGAACCAGCGTATGCCACTTATCTATGTGAAGCTGTATATGTACCAGATTTGTAGGGCATTAGCTTACATCCATAATAGCATCGGAGTTTGCCACAGAGATATCAAGCCACAGAATCTTCTGGTAAACCCACATACCCATCAACTCAAGCTATGTGACTTTGGGAGTGCAAAAGTTCTGGTCAAGGGAGAACCGAACATATCGTACATTTGCTCCCGATACTATAGGGCTCCGGAGCTCATATTTGGTGCCACCGAATACACTACAGCTATTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGGTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGA
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| Protein seq | MGSVGVAPSGLKNSSSTSMGAEKLPDQMHDLKIRDDKEVEATIINGKGTETGHIIVTTTGGRNGQPKQTVSYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVVKHYNKMNQRMPLIYVKLYMYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRLPPEAVDLVSRLLQYSPNLRCTAVEALVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGIPSDIMAKLIPEHVKKQCSYAGV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_01g0010320 | OsKYG_01g0010320.02 | Chr01 | 8559333 | 8563683 | + | NAM | ||
| CDS seq | ATGGGTTCAGTAGGGGTTGCGCCGTCTGGGTTAAAGAACAGCAGTAGCACCAGCATGGGTGCTGAGAAGTTGCCTGATCAGATGCATGATCTGAAGATAAGGGACGATAAGGAAGTTGAAGCGACTATTATTAACGGCAAGGGAACAGAAACCGGCCACATAATTGTCACAACTACTGGTGGCAGAAATGGTCAGCCGAAACAGACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGGCAAAATGTCTGGAGACAGGTGAGACAGTTGCTATCAAGAAGGTTCTTCAGGATAAGCGCTACAAGAACCGTGAGCTTCAGACCATGCGCCTTCTTGACCACCCAAATGTTGTAGCTCTGAAGCACTGTTTCTTCTCTACAACTGAGAAGGATGAACTGTATCTAAACTTGGTTCTTGAGTATGTGCCTGAAACTGTTCATCGTGTTGTGAAGCATTACAACAAGATGAACCAGCGTATGCCACTTATCTATGTGAAGCTGTATATGTACCAGATTTGTAGGGCATTAGCTTACATCCATAATAGCATCGGAGTTTGCCACAGAGATATCAAGCCACAGAATCTTCTGGTAAACCCACATACCCATCAACTCAAGCTATGTGACTTTGGGAGTGCAAAAGTTCTGGTCAAGGGAGAACCGAACATATCGTACATTTGCTCCCGATACTATAGGGCTCCGGAGCTCATATTTGGTGCCACCGAATACACTACAGCTATTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGGTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATGTGAAGAAGCAATGCTCCTATGCAGGAGTATGA
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| Protein seq | MGSVGVAPSGLKNSSSTSMGAEKLPDQMHDLKIRDDKEVEATIINGKGTETGHIIVTTTGGRNGQPKQTVSYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVVKHYNKMNQRMPLIYVKLYMYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRLPPEAVDLVSRLLQYSPNLRCTAVEALVHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGIPSDIMAKLIPEHVKKQCSYAGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 8559537 | 8560572 | + | OsKYG_01g0010320.02 | OsKYG_01g0010320.02,OsKYG_01g0010320.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.764982 | 50.200409 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0252100 | RBH | 13.967464 | 12.232457 | 31.379602 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14860 | RBH | 7.536750 | 6.020143 | 6.331160 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0252100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010730 | SBH | 3.641753 | 48.553879 | 33.841053 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010370 | RBH | 1.697538 | 13.005542 | 12.931338 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010710 | RBH | 7.913007 | 38.497990 | 43.658024 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010220 | RBH | 1.265484 | 1.622248 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010270 | RBH | 45.997223 | 65.374046 | 78.428787 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0138000 | SBH | 22.7891065 | 27.571309 | 46.6077465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010280 | SBH | 1.165747 | 2.078288 | 4.531998 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0137700 | RBH | 26.5279505 | 20.065677 | 74.285225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010250 | RBH | 1.617991 | 1.009065 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013110 | SBH | 2.134248 | 24.815758 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010240 | RBH | 23.398890 | 65.983109 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010390 | RBH | 4.659220 | 4.865439 | 6.257042 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010210 | RBH | 1.547976 | 24.540348 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010350 | RBH | 2.664978 | 13.785054 | 19.993263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010230 | RBH | 4.767194 | 50.566605 | 35.974079 |
