Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsKYG_01g0001280		OGI:01002250 \| 16/16			KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)			Chr01:883719-887786		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK9, OsRLCK9, RLCK14, OsRLCK14
DNA seq		AATTGCTTTTGCACCTATAGAGTCAGAGATCAGGATGAGTAGCAAATTTCTCGCCATGTATCTCCTGCTTGCTCTCCTCAGCCATGGCACCTACAGCTACAGTGCCACCACAGCTTCAGGCTGGGAAGACCAAGACTTCTTCAGGCATTGTCCAGTGTCCCGGTGCAGCGACGGTGGACCAGAGATCCGGTTCCCTCACGGCCTGCAATCCAGCAACACATCATCAGCATGCGGCGCTTCATGCGCCAAGCTAGCATGCTCCGGCCAAGACACCATCCTACATCACCCATTTCTGGGGCCTTGCAAGGTCACCTCCATAGATTACAAGGAGGCCATCATGAGCATCATCCCGCTTGTGTACTCCTCGTCTCCATGCCCGCTTCAGAAGCTCATCTTTGACAATCTACAGCCTTACGACTACCATAGATGTAAATTATACAGCTGGGCTCCTGCAAAAATAGTACGCTGTTCAAAAGAGTTCACACCAAATGGTACTTCTCCAGTCGATGGCTACGCTTTCATGAACAACGCCGATTATATCACCGGCCCAATCTCCTGCCCCAGTGAGGCAAGTCACTTCTCATATTTGGTGGATGCTCGGTTATGCATGTATGTGCTTCCCTTGGACTGCAGGATCGTCTCCAGAGGCTCCATTCCAATACCCGGTCCAGCCTACTCTGATATCGGTGGCCCAACATTCAAGGAAAGAGCAGAAAAATTCATCAACTTTGCTGAGACGACTGTCAGTTGGTATTCTGATGACGAGGTTACCATTAACTGCACAGAGTGCGAACGTCAAAAGCACCGCTGCGCATTCAGCTCACAAAGGAATCGAACATTCTGCATGAGCCGCGAGCATCACGGTACCATTGCTAACTTCTCAAAATCCAATCCTATCACCCTAGTTTTATTTCCTGAACTACTTTTCTATTTTCCACTCCCTCCGTCCCATAATATAGCAATCTAGTACCGGACGAGACACTTCATAGTACAACAAATCCGAACCTGCTTACTGTTTAGATTCATTGTACTATGAAGTGTCACATCTGGTCCTAGGTTGCTATATTATGAAATGGAGGGAGTAGCTATTATGATTTAGCCATACAGTACTAGAGTGCTGCTCTCGCATCATTAATCTTACATGAGATATACTGCAAAATTATTTTTGCAGGCCAGTAGTCTGCTCCTAGCAACCATCTAGGAAGCTTACTAGCTAGCTTTCTCGCACATTAAGTCATTATTCCTTCCATACAATTCCAATAAAAATGTCCCAATACTTAGTGAAATGAAGATAGAACTATATTTGTTCGACGGGCATCAGTAGGATAATTTGATATTTGATAATAAAATCTGGAACTTCTCAGAGATATTTTCAGGTATACAGGACACTAGAGCATTGTTACAAAAAGGACCAGAAAGCAAATGATGAAATAAAATTGGCCAAAAGTTTCATGAGAAGTACGGTGATATAATGTTACACACAAAAGATTGCACACATAATAACTGTCTGAGTCTTTTGCACCAATTAATAAATAGCCAGCTTTTTATTTTTAAACAAGCATAACCAGCCAGTTTTTATATGTAACAATCTCATATACTGTTAAGATTTTTCACGATATTTACCCAAGAAACACAATTTGGATAACATAGAGAAGAAAAATCCTCCATCAACATATTTAGCTCAGCATCGTCACAAATAACAAAAAGGAAAAATTAAAGAACTTCGAGTTGCTAGAGTTGGTAAACGGACCAGTACACATGCTAGTTCATACGCACTTGATACAATCCTTAAGAATATTTTCTGAGGAATAAACACAAACTAAAACAGAAAAGATTACCTACCAACAGTATCAAGTGACTCATGAGGCCATAGAAGTAAACACGTCAGACCATATTATACTTCAGTCGCTGAGTCCATAGGAATCACATTCCCTTCTGGCATTACTGACTTGTCAGATTTTGTGGCTGCATTTTCGATACTGTCCTGGTTCATCCTGGAACTGCAGGAGAGCCAGTTGACAACCAATCCTGGAAAAAAAAAAGAGAATGATTGAATATCGATGTCACTCTGGCTCATTCTGGAGCTGATTTTGCTAATACACTGAGGTAATGTGCTCCTGGAAAAATGAAATAGTTTGATGGACCCATATGAACTATGAAACCATGCAAGACAAAACAAAACACCCAGGAGTAACCAAGGTGGCGTCTGGCTGCCTCTAGAATTACGAAGTAGCTCGAAAGTGTAAATAATTGAGACTGCGAGGGAGCACTTGACTGAGAAAGATATAACCTGAGTATTGCTTTTGTTAACTGATACAACAGGAGCTGCAGCTAGATCTGTGGTTGCTTCAATGAATGATCAGTAGATACAAGAGTTGATATGTGGAACCCTTGATAAGTTAACCCGCAATCAACCTCAACTCGCTCTAACATCCTTATCTGGCATTCTAGCATAATGACAAAATTATCAGAGCTAGTATGCAGAACTGGCTTATGATGATACTGCTAACTAAGATGTAAGGAAAAATTCACTATTGCAAACATATTCATATAACCATAGACTCATAGTGCAGTTGTTCCTTTAAAACTAAAACTCTATCCTATCCCACTAGGGCCATGTTCTGTTGACATGTTGTGTAACTAATTAACTATGCTGGATCTCATTGTTTTTTCAAGAAGTACTTGTTCATTATCAGTTAAACCATCAATCAAATCTTATTATCTTTTTTGGTACTTGCAGGTTCGAGTGTCAAAGTCATTTCAGGTACTGCTATAATTCAAACCTACCCTCTATTCATTATTCAAAAGAGAGAAGAAGCACTGTTATAACTTATCAGCAATAAAAAGTTCTTATTGCTGGCGCTTCTGACTCAATATTTTGCTAAAAAGGACACTACCTTGCCTTACCCATCAGGCAACTACAATCAGTTGATCACTAGTCCATAGCTTTCTATCCTATTGCAATGCGCTGATTTCCCATTCTCTGTTTATTCAGCTACATCATCGGCAGCTGCATTTGTTGTTCTTTCATTGATCATAGCCACTGTGCTCTATATTTCGCTGAAGTCAAGGTATGACGAGGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATACGGCACATCGAAACCCACAAGGTACAATTTCTCTGATGTTAAGAAGATAGCAAGACGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTCTACAAAGGAGAACTACCAAACGGAGTGCCCGTGGCAGTTAAAATGATAGAACACACTACAGGAAATGGAGAAGAATTCATCAATGAAGTAGCAACCATTGGACAAATTCATCATATAAACATTGTCCGCCTTCTGGGCTTCTGCTCTGATGGAACAAGACACATTCTTATCTACGAATTCATGCCTAATGAATCATTGGAGAAATATATATTCTTGCATGACCCAAATACTTCTCAAGAACTCCTAGCAGCAAACAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGCATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCCGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGTTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGATGTATACAGTTTTGGCATGCTCGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCGAGTATTCAGAACCAAAATGAGGTCTACTTTCCAGAATGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTAGGGAAATGACTGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTAGTGGCATTGTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACTGGAAGGTTGCAGAATATAGAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA More
CDS seq		ATGAGTAGCAAATTTCTCGCCATGTATCTCCTGCTTGCTCTCCTCAGCCATGGCACCTACAGCTACAGTGCCACCACAGCTTCAGGCTGGGAAGACCAAGACTTCTTCAGGCATTGTCCAGTGTCCCGGTGCAGCGACGGTGGACCAGAGATCCGGTTCCCTCACGGCCTGCAATCCAGCAACACATCATCAGCATGCGGCGCTTCATGCGCCAAGCTAGCATGCTCCGGCCAAGACACCATCCTACATCACCCATTTCTGGGGCCTTGCAAGGTCACCTCCATAGATTACAAGGAGGCCATCATGAGCATCATCCCGCTTGTGTACTCCTCGTCTCCATGCCCGCTTCAGAAGCTCATCTTTGACAATCTACAGCCTTACGACTACCATAGATGTAAATTATACAGCTGGGCTCCTGCAAAAATAGTACGCTGTTCAAAAGAGTTCACACCAAATGGTACTTCTCCAGTCGATGGCTACGCTTTCATGAACAACGCCGATTATATCACCGGCCCAATCTCCTGCCCCAGTGAGGCAAGTCACTTCTCATATTTGGTGGATGCTCGGTTATGCATGTATGTGCTTCCCTTGGACTGCAGGATCGTCTCCAGAGGCTCCATTCCAATACCCGGTCCAGCCTACTCTGATATCGGTGGCCCAACATTCAAGGAAAGAGCAGAAAAATTCATCAACTTTGCTGAGACGACTGTCAGTTGGTATTCTGATGACGAGGTTACCATTAACTGCACAGAGTGCGAACGTCAAAAGCACCGCTGCGCATTCAGCTCACAAAGGAATCGAACATTCTGCATGAGCCGCGAGCATCACGGTTCGAGTGTCAAAGTCATTTCAGCTACATCATCGGCAGCTGCATTTGTTGTTCTTTCATTGATCATAGCCACTGTGCTCTATATTTCGCTGAAGTCAAGGTATGACGAGGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATACGGCACATCGAAACCCACAAGGTACAATTTCTCTGATGTTAAGAAGATAGCAAGACGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTCTACAAAGGAGAACTACCAAACGGAGTGCCCGTGGCAGTTAAAATGATAGAACACACTACAGGAAATGGAGAAGAATTCATCAATGAAGTAGCAACCATTGGACAAATTCATCATATAAACATTGTCCGCCTTCTGGGCTTCTGCTCTGATGGAACAAGACACATTCTTATCTACGAATTCATGCCTAATGAATCATTGGAGAAATATATATTCTTGCATGACCCAAATACTTCTCAAGAACTCCTAGCAGCAAACAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGCATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCCGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGTTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGATGTATACAGTTTTGGCATGCTCGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCGAGTATTCAGAACCAAAATGAGGTCTACTTTCCAGAATGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTAGGGAAATGACTGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTAGTGGCATTGTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACTGGAAGGTTGCAGAATATAGAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA More
Protein seq		MSSKFLAMYLLLALLSHGTYSYSATTASGWEDQDFFRHCPVSRCSDGGPEIRFPHGLQSSNTSSACGASCAKLACSGQDTILHHPFLGPCKVTSIDYKEAIMSIIPLVYSSSPCPLQKLIFDNLQPYDYHRCKLYSWAPAKIVRCSKEFTPNGTSPVDGYAFMNNADYITGPISCPSEASHFSYLVDARLCMYVLPLDCRIVSRGSIPIPGPAYSDIGGPTFKERAEKFINFAETTVSWYSDDEVTINCTECERQKHRCAFSSQRNRTFCMSREHHGSSVKVISATSSAAAFVVLSLIIATVLYISLKSRYDEEVHLKVEMFLRTYGTSKPTRYNFSDVKKIARRFKEQLGQGGFGSVYKGELPNGVPVAVKMIEHTTGNGEEFINEVATIGQIHHINIVRLLGFCSDGTRHILIYEFMPNESLEKYIFLHDPNTSQELLAANKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSIQNQNEVYFPEWIYEKVITGQDFVLSREMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIEVPPKPFVSYESHAVP
Function		Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsKYG_01g0001280	OsKYG_01g0001280.01	Chr01	883719	887786	+	NAM
CDS seq	ATGAGTAGCAAATTTCTCGCCATGTATCTCCTGCTTGCTCTCCTCAGCCATGGCACCTACAGCTACAGTGCCACCACAGCTTCAGGCTGGGAAGACCAAGACTTCTTCAGGCATTGTCCAGTGTCCCGGTGCAGCGACGGTGGACCAGAGATCCGGTTCCCTCACGGCCTGCAATCCAGCAACACATCATCAGCATGCGGCGCTTCATGCGCCAAGCTAGCATGCTCCGGCCAAGACACCATCCTACATCACCCATTTCTGGGGCCTTGCAAGGTCACCTCCATAGATTACAAGGAGGCCATCATGAGCATCATCCCGCTTGTGTACTCCTCGTCTCCATGCCCGCTTCAGAAGCTCATCTTTGACAATCTACAGCCTTACGACTACCATAGATGTAAATTATACAGCTGGGCTCCTGCAAAAATAGTACGCTGTTCAAAAGAGTTCACACCAAATGGTACTTCTCCAGTCGATGGCTACGCTTTCATGAACAACGCCGATTATATCACCGGCCCAATCTCCTGCCCCAGTGAGGCAAGTCACTTCTCATATTTGGTGGATGCTCGGTTATGCATGTATGTGCTTCCCTTGGACTGCAGGATCGTCTCCAGAGGCTCCATTCCAATACCCGGTCCAGCCTACTCTGATATCGGTGGCCCAACATTCAAGGAAAGAGCAGAAAAATTCATCAACTTTGCTGAGACGACTGTCAGTTGGTATTCTGATGACGAGGTTACCATTAACTGCACAGAGTGCGAACGTCAAAAGCACCGCTGCGCATTCAGCTCACAAAGGAATCGAACATTCTGCATGAGCCGCGAGCATCACGGTTCGAGTGTCAAAGTCATTTCAGCTACATCATCGGCAGCTGCATTTGTTGTTCTTTCATTGATCATAGCCACTGTGCTCTATATTTCGCTGAAGTCAAGGTATGACGAGGAGGTACATTTGAAGGTTGAAATGTTCCTCAGGACATACGGCACATCGAAACCCACAAGGTACAATTTCTCTGATGTTAAGAAGATAGCAAGACGCTTCAAGGAACAATTAGGTCAGGGTGGATTTGGAAGTGTCTACAAAGGAGAACTACCAAACGGAGTGCCCGTGGCAGTTAAAATGATAGAACACACTACAGGAAATGGAGAAGAATTCATCAATGAAGTAGCAACCATTGGACAAATTCATCATATAAACATTGTCCGCCTTCTGGGCTTCTGCTCTGATGGAACAAGACACATTCTTATCTACGAATTCATGCCTAATGAATCATTGGAGAAATATATATTCTTGCATGACCCAAATACTTCTCAAGAACTCCTAGCAGCAAACAAGATGTTAGATATTGCCTTAGGCATTGCCCGAGGAATGGAGTACCTGCATCAAGGATGCAACCAGCGCATCCTCCATTTTGATATCAAGCCTCATAATATCTTGCTGGACTATAACTTCAATCCGAAGATTTCAGACTTTGGTCTTGCAAAGCTGTGTGCAAGGGACCAAAGCATTGTTACCTTGACCAAAGCAAGAGGCACAATGGGCTACATTGCACCAGAGTTATATTCTAGGAACTTTGGGGAGATATCTTACAAGTCAGATGTATACAGTTTTGGCATGCTCGTGTTAGAAATGGTTAGTGGAAGGAGGAACTCAGACCCGAGTATTCAGAACCAAAATGAGGTCTACTTTCCAGAATGGATCTATGAGAAAGTAATTACTGGGCAGGACTTTGTACTTAGTAGGGAAATGACTGAAGAAGATAGACTGAAGGTTAGACAGATGGCCCTAGTGGCATTGTGGTGCATTCAGTGGAACCCAAGAAACCGTCCCTCGATGACGAAGGTTGTAAACATGCTAACTGGAAGGTTGCAGAATATAGAGGTGCCCCCTAAGCCATTTGTTTCATATGAAAGCCATGCTGTGCCATAA More
Protein seq	MSSKFLAMYLLLALLSHGTYSYSATTASGWEDQDFFRHCPVSRCSDGGPEIRFPHGLQSSNTSSACGASCAKLACSGQDTILHHPFLGPCKVTSIDYKEAIMSIIPLVYSSSPCPLQKLIFDNLQPYDYHRCKLYSWAPAKIVRCSKEFTPNGTSPVDGYAFMNNADYITGPISCPSEASHFSYLVDARLCMYVLPLDCRIVSRGSIPIPGPAYSDIGGPTFKERAEKFINFAETTVSWYSDDEVTINCTECERQKHRCAFSSQRNRTFCMSREHHGSSVKVISATSSAAAFVVLSLIIATVLYISLKSRYDEEVHLKVEMFLRTYGTSKPTRYNFSDVKKIARRFKEQLGQGGFGSVYKGELPNGVPVAVKMIEHTTGNGEEFINEVATIGQIHHINIVRLLGFCSDGTRHILIYEFMPNESLEKYIFLHDPNTSQELLAANKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYNFNPKISDFGLAKLCARDQSIVTLTKARGTMGYIAPELYSRNFGEISYKSDVYSFGMLVLEMVSGRRNSDPSIQNQNEVYFPEWIYEKVITGQDFVLSREMTEEDRLKVRQMALVALWCIQWNPRNRPSMTKVVNMLTGRLQNIEVPPKPFVSYESHAVP More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.000000	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0116300	RBH	0.098268	0.431257	0.587319
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g02690	RBH	0.224978	0.0	0.079754
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0116300	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0001220	RBH	0.136429	1.008476	0.429167
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0001080	RBH	0.069754	0.307502	0.332710
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0001240	RBH	0.214158	1.921973	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0001120	RBH	0.000000	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0001230	RBH	6.210065	7.798440	8.507724
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0016100	RBH	0.4271795	0.5069765	0.8147205
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0001070	SBH	0.206319	0.096424	0.315710
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0014500	RBH	0.0265545	0.0553125	0.153599
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0001130	SBH	0.000000	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0001390	SBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0001090	SBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0001230	RBH	0.000000	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0001180	SBH	0.000000	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G001280	RBH	0.076288	0.000000	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0000980	RBH	0.068539	1.712051	0.473257

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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