Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0016040 | OGI:12058400 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:20268497-20271513 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCGGCACCGCACCTCACTCCCCCTCTTCCCCCTATCTGCTGCAGTCGCCGCCTCCGGATCCACCGCCGTCCGCCAGCCAGCGCCGCCGCCGTCGCCCTCCAGCGCCTGGATCTACACGGCCCGCCCCGCCACGGCCGTCCCCTCGTTGGTCGCCACCCTCGTCGCCCGCCGCCGACTCCGCCAACGCCAACGCCGTCGTCTGTCATCGTCGCCCGGAGCTCCAAGGACCAAGGCGTCAGGCCGGCTCTCACTTCTTCGCCGCGGCTCTCGTCCAGTGGCTCTTCTCCGCCACTGTGGTGTGTTCCCCTCTCCCCTCCCCTGTAAACAATGTATGGTTGTTGGATCATTGCTGATAATTGTTTCTTTGGTTGAGCCTGCTGTGCTGATTTCATTGTGGAAATTGAGAAAAAGATTTTTTTTGCTGTTGTTGAGTGGGTGGTGTGGGGTGAGGAGGGAGGAGGACATGGATAGATTGGATGGAAGCTGAAGAACATGTCACATGGGAAATGGGATGCATATGCAGATGCATGTAGAGCCCTCATCACCCTCCAATAAGGCAGATGGATGGACAGATCTGTTCATAATGCATGTGAGTCAACGAATTTTAACATCATTTATCTCCCTTTAGGACCCAGAAGTATGCCCTGCACAAACACACACATTGCACCATTAAGATTCAGATCGGCCATAATTATTTTTGTAACAAGAAAAAGGAATACTTGCACATGGACAGTGGCTCATTGAAAATTCTTTGACTGCTTATACCGCCATGTCAAGTGTGAAAAACTGTTAACAGCTTCCAAGTGGTGAATAGCCTCTAATACTGATGTTCTGATTGGTTGATCTCTGTTTTAGGCGTGAAAATTGTTTCAAAATTCGAAGGATCTCACCTTTGTCAAATCTGTTTCAATTAGCTTCTCATGTTATCGCACATTAGCATGAGTTGTAGACACATAGAGTTGTTAATTTGCATGTTCAAAGCATTGTTTACTGGGATCCACTTGGTTTTGGTTTAGTTTACCAAAAGCCATTTTAGTCATCAACAGTTGAAACAGTGGCCTGAAAGGCTAATAGGCACATTTCTTGTACCATTATATGGGGGTTACTTAGTCATTTCATTTAGCCATGAATCCATATAATCCATATGTGCCTATACCTTAACATCTTGTTGAAAAAAATGGCGTACAGAGAGGAGATCATTCCTGTAGCTGTAGGTCTGTGCATGGTTGCAGCAGTCTTGCCGATTGATCTGAAATGGTCGAGTCATGTAAATCATTACTGCAAGCTCTTATACCAAGCTCCCCTACAGTTTGTGGTGAGTCATGGAAATTATTAGTGCTCTGCTTTGTCTTTGCTCTGATAACATAGATCTAGCATCTTAGCATGGTGACAAATTATGACATGATTTCATCCTCGCTCCGCCTATGAAATATTTTTTGTCGTCAATATAATCTTTTATACAATTTTTGCTTGTAATTGCTCTTTTTTTTTGTTGCTCCAATAAAAAACATGTGCTGTTAATTAATTAATTCTGAAACTTGGATGGGATATCCATTTTTTTGTGTGTACTTGGTCATAAAATGTGTGCAAACCTGCTAATGTTGTTGTTGTCCAAAATCTATGCTATCGATTGTTTTATCTTTGATGTTATTGTCTCCTTGGTTCCCATGAAAGGGAACTCCAACAACTGTTTTATTCTAACCTTGTGGTTCATGCTTAACGTTTTTTTCAATAGTTCTATTCTAGGTCTACAAAGGAAAATGTCACGGGAACAAGATAACAATTGGCCTGCAAATTCTGGAGAAAGCGATGGTGGTAATGTTAGCCCAAGTGATAACCCCGATAACATGGAGGTAAATTCACCCATATGGAACAAATAAGACCTCAATTGTACATATATCCGCTCTGAATGACTAATTTATACCTTTCTTTAAAGGACGTTAATCCTTCGGCCACAACGCACTCTGGGGATACTGCCACCTCATCGATAAGAAGGGGTAGAGGTCCAACCAAGATGCCCTCTGGCCTTTACACTATCACAGCGTTAGATGCAGATGGGAACCCTACAGCTCCAGAATCAGCACTCACCCCATATTCCAATGCTATAGGTGTCATCGTGAAGGATGACATCCCCATCAAGTACCGACACTGGAAGACCAGAGATCCAGATGAATTGGAGTGGATGGTACCAGACAGAGACAAGGAACTTGCTTGGGAAAGGTTGAAGCGGACATTCCAGTTCCCCGAGGGTTCAGAAGAACTTGCAAAGCACAAGGCCCTTCAGAGGATGTCCCTCAGCTTCAAGAAGTTTAAGACGGACCTTACCAAGAAGTTTGTCAAGAAGGGGTTGACACCAAATTTTGAAGATCCAAATTATCGAAGGTGCCGCCTTTTCTGGGATGACTTTGTGGCCTACAGAACATCAGATGAGGCAAAGGAGATTAGCGAAAGGAACCAGGCCAATGCGGCCAAAAATTTGTACCCTCACCGTCTTGGCCCTAGCGGATATGCTAAGAACGTAGGCAAATGGCAAGAGAGGGAAGATGAGCTATTACAAAAGGGAATCGAGATAGAGACGAAGGATTGGTCCCAACGAGGAAAGAATTATCAATACGCCCGAGGGGCAACACTCTCGGATACTGGCGAGTTGGTACACAAGGGTCCACGATCGCAAGAAGTGTCCCAAAGGCTCCATGATGCCCATCAAAAGTCTTTAGAGGGTTCTTTTGTTCCGAACAGGGAGAAAGATGAGCTCACACTTGCATTGCAGAACTCTGAGCATCCGGGACGCACAAGAGGAGTAGGCCTAGTTCCATGGAGGGAAGGTTTTCCTGAAGACAAACGTAGGTACCGGTCTCGGAGTAATACAAATACTGGAGACCAATCAGAAGAGATAAGGCAACTGAAGGAACGAATGGACCTGATAATGGTGAGGCTCGAAAGGCAGGATGTAGGCGATGTTGGCCGTGTAATCAGTCCAGGTGGGAGGAAAAGCAGTTCCGCTTCAATTGA
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| CDS seq | ATGGTGCGGCACCGCACCTCACTCCCCCTCTTCCCCCTATCTGCTGCAGTCGCCGCCTCCGGATCCACCGCCGTCCGCCAGCCAGCGCCGCCGCCGTCGCCCTCCAGCGCCTGGATCTACACGGCCCGCCCCGCCACGGCCGTCCCCTCGTTGGTCGCCACCCTCGTCGCCCGCCGCCGACTCCGCCAACGCCAACGCCGTCGTCTGTCATCGTCGCCCGGAGCTCCAAGGACCAAGGCGTCAGGCCGGCTCTCACTTCTTCGCCGCGGCTCTCGTCCAGTGGCTCTTCTCCGCCACTGTGGTCTACAAAGGAAAATGTCACGGGAACAAGATAACAATTGGCCTGCAAATTCTGGAGAAAGCGATGGTGGTAATGTTAGCCCAAGTGATAACCCCGATAACATGGAGGACGTTAATCCTTCGGCCACAACGCACTCTGGGGATACTGCCACCTCATCGATAAGAAGGGGTAGAGGTCCAACCAAGATGCCCTCTGGCCTTTACACTATCACAGCGTTAGATGCAGATGGGAACCCTACAGCTCCAGAATCAGCACTCACCCCATATTCCAATGCTATAGGTGTCATCGTGAAGGATGACATCCCCATCAAGTGGGAGGAAAAGCAGTTCCGCTTCAATTGA
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| Protein seq | MVRHRTSLPLFPLSAAVAASGSTAVRQPAPPPSPSSAWIYTARPATAVPSLVATLVARRRLRQRQRRRLSSSPGAPRTKASGRLSLLRRGSRPVALLRHCGLQRKMSREQDNNWPANSGESDGGNVSPSDNPDNMEDVNPSATTHSGDTATSSIRRGRGPTKMPSGLYTITALDADGNPTAPESALTPYSNAIGVIVKDDIPIKWEEKQFRFN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0016040 | OsIR64_12g0016040.01 | Chr12 | 20268497 | 20271513 | + | NAM | ||
| CDS seq | ATGGTGCGGCACCGCACCTCACTCCCCCTCTTCCCCCTATCTGCTGCAGTCGCCGCCTCCGGATCCACCGCCGTCCGCCAGCCAGCGCCGCCGCCGTCGCCCTCCAGCGCCTGGATCTACACGGCCCGCCCCGCCACGGCCGTCCCCTCGTTGGTCGCCACCCTCGTCGCCCGCCGCCGACTCCGCCAACGCCAACGCCGTCGTCTGTCATCGTCGCCCGGAGCTCCAAGGACCAAGGCGTCAGGCCGGCTCTCACTTCTTCGCCGCGGCTCTCGTCCAGTGGCTCTTCTCCGCCACTGTGGTCTACAAAGGAAAATGTCACGGGAACAAGATAACAATTGGCCTGCAAATTCTGGAGAAAGCGATGGTGGTAATGTTAGCCCAAGTGATAACCCCGATAACATGGAGGACGTTAATCCTTCGGCCACAACGCACTCTGGGGATACTGCCACCTCATCGATAAGAAGGGGTAGAGGTCCAACCAAGATGCCCTCTGGCCTTTACACTATCACAGCGTTAGATGCAGATGGGAACCCTACAGCTCCAGAATCAGCACTCACCCCATATTCCAATGCTATAGGTGTCATCGTGAAGGATGACATCCCCATCAAGTGGGAGGAAAAGCAGTTCCGCTTCAATTGA
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| Protein seq | MVRHRTSLPLFPLSAAVAASGSTAVRQPAPPPSPSSAWIYTARPATAVPSLVATLVARRRLRQRQRRRLSSSPGAPRTKASGRLSLLRRGSRPVALLRHCGLQRKMSREQDNNWPANSGESDGGNVSPSDNPDNMEDVNPSATTHSGDTATSSIRRGRGPTKMPSGLYTITALDADGNPTAPESALTPYSNAIGVIVKDDIPIKWEEKQFRFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.026479 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36580 | SBH | 0.325926 | 0.544934 | 0.403641 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016760 | RBH | 0.0 | 0.0 | 0.651337 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016890 | RBH | 0.000000 | 0.000000 | 0.074861 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017240 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016570 | RBH | 0.077914 | 0.027387 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016090 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0295700 | SBH | 0.271296 | 0.132552 | 0.0958965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0328200 | RBH | 0.0268645 | 0.140092 | 1.340544 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016660 | RBH | 0.000000 | 1.807067 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016450 | RBH | 0.000000 | 0.200065 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014890 | RBH | 0.0 | 0.0 | 0.0 |
