Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0007350 | OGI:12018540 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:6478441-6484167 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTGATCAAGATCAGCAACTATCCTTCTCCTCGAAGCAATCAATGTTTCAATCTCGTTCCTTGTTGCATCTCCATTACCAGATCTCCGTAGAGTCGCAATTTGCCTATCGATGCTTCTCACCTGTATAGTACAAATAAATTAAATTCATGTAATCGTGAGAAAGTATTTCTCAAAGTTTAATCTCAAACAATATTTTAAATAAATACGCCATATAATTAAAAAATAACGGTTTTGGTAGAGTGGGATTTATTCTCAGTGTTATTTCTTGCTAATATATAGACGACAAGACTTTACAAGTGCACAACATAGTGTTCAACATATTTGTTTTTCTTGATCTTTGTCACAAAATAGATTGAAATTAAAGTAAAATGATCTAGCTGACCTTTCGATATGGCCAGCGTAATACGCCATGTTTTACGACAGATGCCTTTGAGAGCAGTGGCACATATATCCAGCTTTTTAGCAGCCTTGGCGATGGGTAGTTCAAAGTAGGGGGCAATGTCGCTAAGCTGAAGCTGCTTAGTTTTCTCCCTCTAGAATAGATCAAATTTAGTTAATAACAGTACACATATAGAATAGTAATGCTTAATTAGAAGTATTTTTTTTTGTATGTTTTTCATGGTTCTGATCGATTGTGTAGATAACTGGAATTTCTTATAGTAACTTTTGGTGTTTTGCCGTACCTCCATAGTGTGTTGACAAGAGGTACACAGATTAATACACATAATAAAAAAAAATATTATGCCACCTCTCAGTACCTTCTCAATCCCCTACTCATCCTAGCTACTCATTTTCTTAGAGCATATCATATCTTGATATACTTTATTCTCGAATAGATGAAATGCATCTTAATATTTTTTTTACGGGGAAAATGCATCTTAATATAACTGTAGTAAAACTTCCAAATCTTAAATTATTAATAATTAATGTAAAAGTGTTAACATACATATTGGGGTATATGTGAAAATGATATGAGTGGATTTGCCATAAAAAACACTTTTATTCTTACGTTTAAATACTCTTTTATGAATATATAGCTTGAAAATGTGACGATGAAAAATGTCTATTAATTGAAGACTGTGTTGATATCCAATATGTCGTAAATATACAGCATCATTTTTTTCTTTTTGTTTCCCTCAAATTTTGATAACCATTATTTCTTCAGTTACCCAGTTAAGTAATAGAGTGAAAAGAGTATCATTAGATCTATCATGGAAAGAAAAGTACTTTAAGAATGCCTAATATATGTTTGTCTATCTGCACAAATATTTGTAGAGAAAAGATGAGTAGTTCAATAAATTAAAAGTGTCAACTCTATCATATATTTAAAGGCAAAATTTGCTACAGGACATCCGAGAAATATGTAATTAGCTATGAGACATCGTAAAGACGCGACTTTGCCTGTGGACACTCCAAAAGTATGGTAATTTGCTGTAAGACACTAGATGTATTAAAATATAATATTCACCCAATTGATGATTGAGAAATAACATAAAATGACAGTTTTGCCCTATTCTTATTCTCCGTTCTCTCTCGGTCTTCTTCGACGCTCCTCTCACATTACTACAGGATTGATTTTCTTGGACGCCACCCCCATTTTGTTTCCATGCGGTCCGTAAGTTAGACCGCACGGAAAAGTGGGGCGAGCGAAGCCAGGTTCTCGCCCGCACACGAAAATCAATTTTCGTGTGCGGGTCACTTAACAGGCCCGCACACAAAAATAACCCTATTTTCGCATGCGGGCCTCCTAATCCACCCGCACGGAAAAATAGCGTTCCCTCCCATCCTATTCAAAATAATTTAACTTCCTTCTCTTCCCCCCGGCCCCTTCTCTCCTCTCTCTCTCCCTTATCTTCTCACATTCCTTCTCCTCCACTCATTTTCCTCTCTCTCTCTCACCTTCTTCTTCTGCCTACTTCTCCACAGGATGGACGGCGGTGAGCTCGGCGGCGGCGGCGGCAGCGCAGGCGGCACGGGCAGCCCGCGGCTCCTCCCCTCCCCTCCCCTCCCCGGCGAGTGCGTGGGCGGTGGATCCGGCGGGCAGGCGGGTGACGACGGGCGGCTGCGGCTCCTCCCCTCCCCTCCCCGGCAGCGACGGGAGTGCCCGTCCCTGCCCGGATCCGACGGCCGGCCGCCCTCCCTCCGCCATGGATCCAGCGCAGGAGACCGGCGGGAGGCGGCGGCAGCGCCGCCGCCGACAATGACGAGGCGGGAGCGGCGGGGACGACCTGATCTAGGGTTTTCTGTTTTTTTCTGAAATTTTATTTTTTTCGATTTTTTGTTTTTGCATGCGGGCGATATAAGCACCCGTTTCGCGTGCGGTTGCGCCACTGCACACAAAAATAGCGATTTTCACAGACGAATTGCTCTAGACGGGCCGAAGTTCTGCACGCGAAAATCCAAATCGACTGCACCGGAAAACTATGTGTGTAGTAGTGTCATGTCCGCACCCTGCTACCAGTGAAATCGCAAGCCACGCCCGCCGCCACGGAGAGTCCTCCCTGACACGGTGGAAGGAGAGCACGCTGAGGAGCTAGCTGGACCACGCAGATGCGGCGCGCCTGGCGCCAGCACTCGCGCCAAGTCGCCAGTCACCATAGGGCGCGAACGCGACGTCGCGCGCGGCCATAGCGCGCGAAGGCGCCCAGTTCACGTGCCTGCATAAACTCCTCGATCGGCCGCGGATGCCGTCGTCCGAGTCGGAGCAGCAGCTAGCATCAGGCCGTGCGCCGTGGCGAGGGACCGGAGCATGCGGCATGCAGCGCGCCAAGTAGGTGGAGGCGACCGAGCAGCAGCAGGAGTCCCCGCGCGGCAACGTGCAGCAAAGCTTTTGTTTGCTTGGTTGTAGCCGCGCGCGACAGCAGGCTCGATGGATGGCTGGGGCAGCACGTAGCTGACACGTACGTTTGTTACGTTATAGCCTAGCAACTCCGGCCAGCAAATGGGAGCAAGTGAACTACGTACTCCATCCATTTCATAGGCAACTGAGAAGCATCCAAAGAAAACCGAGGAAGGGAGAAAATTGTTATTTTATATCATTTCTCTCTCATCAATTGAATAGATGTTATATTTTAATGCGTCTAGTGTTCTGCAACAAATTATCATTCTTTTTTAAGTGTCTTCGGGTAAATTCACGATTTTACGATGTTTCACAGCTAATTATATATTTTTTAAGTGTTCTATAGCAAATTTTGCCATATTTAAAAGATAGATCGGAGGTAGTATATTATACGTACCTGGATTGCAAGTGCACTCCTGGTAGCGAGATGGAAGCGTTGTTGGACGTGATGACTGGTATGACTTGCTTGGGAAGGCCCTGCAAATACACAAATGTACCAAACATGCATGATGGGGTTAGCCATGGCAAAGCTAGCTAGGTAATTCAACTCCAGAACTGAATTTTAATCGATTCATGAACGATTATTTAGCAATGTGCTCCCTCCGTTCCATTTTAGAAGATGCTTTGACTTTTTTTTTTCTAAATCAAACTTATTTTAATTCGATAAAATTTATAAAAAAATATATCAACATTTTTCAACACCAAACTAACATACTATCAATTTCCAGGGTTTGATTTTTATTACACTACTTCCAATCGGTTGCTTGAAAGAACAGTAATTGGAAGCCAAAACTTTTTTAGGGTGGAAACCAAAAGAGGTTATTGTGCCCAAAGTTTGTTATATTATTGTACTTTGCGTGAAATATATGTGATGTACGGCATGAATTGAATTAAAACTCAATTGCACAAATTATAGAAAATTATTTTTTTGCTAACATGAAAATTGAAAAGTTATTAAAACAAATAGAATTAGGTTCAATAGAACTAATCTAGTGTTAAAAGAGTTACTACATTTTCCTATAAATTTGATAAATTTTAACATAGGAAAAAGTTAAATCAACTTACAATACAAATATATAATATAACTAGCTAAATGTCTGTGCTTAATTTGCTATGGATAAAAGAAAAATCACAATATTTTCTAAAATAAATAAAACACATTTTCCATAAAAATATGTTATCCACATTTTTTGGAAAATGTGGCTACCAACATTAATTTTATATGCGACTATCCATTTAGATTTAGTTATTTATAATATTAAAAAGTGCAAGGAGTAATAACTAAAAATTGTAATAGGAGTAGATGGTATGACAGATTCACTATCATTGGAGCTAGCCTTTAAATTTTTGAAGGAGTATAGATTAAGATCACGATCGAAATTGCACTACGTACATGTGCAGAATGCAACCTGATGCTGGCGGCTGGATAGCAGTAGTGTCTAGGACGAGGAGTCGACGATCACCACTGCCATTGTTGTTAGTTGTTGCTGCTTGATCTGCTGCCACAAGGCAACGTGATGATTCTAGCATTGGCAGGACGGCAGCATTGTGGACGACGAGTTGACCATGATCACCATTGCCATTAGTTCTTTCTTCTGCTGCTGTTGCTGATGATGACGATGCTCTTCTATGTGCGTCGTCGTCGCCGACATGGCTGCTGCAAGGCGCCATGGTGGTGCAGAGGGCGTCGTGGAACGCCGACAGCGAGTCCTGCACGACGGCGAAGCCGCCGCCGGCTCGCCGGAGTGCGTACTCCGTCAGGTACTGCTTCACCCAGTCGTAGCCCCGCCCTCTGAAACTGCGATTCATTGGATGGATATATATAGTGGATTAATCAATCGATCAGCTTGCATCAAATCACTTGCATATACTACCTCCGTTTTAATTAGATGATACCATTAACTTTCGAACACACTTAAATTTGATCATTTGTCTTATTTAAAAAATGTACGTTGGTATCATTTATTTCATTGTGAGTTGTTTTATCACTAAAAGTATTATAAGCATGATTTATATCTTAACATTTGCACAAAAAATTTAAATAAGACGAATGGTTAAACGTGTGTTTAAAAGTTAATGACGCCATCTATTCAAAAAATGGAGAGAGTATAAGATTTAATCAGGACAAGAAATCTAGAGAAAATAATGTCATTTTAGGTATTACTTTGAGTTAATCAATTTACTCGGGTGATGATCTTACTTGATGATGGAGTGATGTGCCAGCGCCGGAGCCGGGGCCGAGGCGCTGACACGGTACACGTCCAGTATTGCATGGTAGAACTCACCACTAGCGACGCCGCCATGAATGCAAAGCTTCGTGATCTCCAACCCTAGAAGTTCATAATAAGAACAACCAGATTAAAGCGAAGTATCTCGACTAACGTTTGGTACATATCATTAGCATTTTTTTTAATATTAATTAATGCTCATCCCATTATTTGGCATTATTTGTTTTCATCCATGATCAACATCGAGAAGATTTAATGTGATGTACCATTGGAATGCACTACTTCTCTTAGCACTTGGCAACCACTGCAGTAGTCCTCCTGCGGCGGCGCCGGCGCCGGAGCGGCGGACGACGACGTCGACGCACCACCGTACTCGCCGTCGATTTTAGAGCAGTTATTACCAAACGCGGTCGACCAGTCCACAAGATCGTCGACGGAGGAACCAGGCTTATTAATCCGGCCGCCGCCGGCGCCGTCCACGCTCATCTGCACCGGCGCCGGCGCCGGCGGAGCGCCGTCGTCGTCGACGTCTCCAAGGACGGAGAGATCGAGCAGTTCTAGCACGTCGAAGTTGTCCAGGAGCGGCGACGGGAAGAAGTCGAGTTCCAAGTGCTCCCCTCCTCCATCGGCGGCGCCGTTGCCGCCGTCGCCCGCCAT
More
|
||||||||||
| CDS seq | ATGGCGGGCGACGGCGGCAACGGCGCCGCCGATGGAGGAGGGGAGCACTTGGAACTCGACTTCTTCCCGTCGCCGCTCCTGGACAACTTCGACGTGCTAGAACTGCTCGATCTCTCCGTCCTTGGAGACGTCGACGACGACGGCGCTCCGCCGGCGCCGGCGCCGGTGCAGATGAGCGTGGACGGCGCCGGCGGCGGCCGGATTAATAAGCCTGGTTCCTCCGTCGACGATCTTGTGGACTGGTCGACCGCGTTTGGTAATAACTGCTCTAAAATCGACGGCGAGTACGGTGGTGCGTCGACGTCGTCGTCCGCCGCTCCGGCGCCGGCGCCGCCGCAGGAGGACTACTGCAGTGGTTGCCAAGTGCTAAGAGAAGTAGTGCATTCCAATGGGTTGGAGATCACGAAGCTTTGCATTCATGGCGGCGTCGCTAGTGGTGAGTTCTACCATGCAATACTGGACGTGTACCGTGTCAGCGCCTCGGCCCCGGCTCCGGCGCTGGCACATCACTCCATCATCAAAGGGCGGGGCTACGACTGGGTGAAGCAGTACCTGACGGAGTACGCACTCCGGCGAGCCGGCGGCGGCTTCGCCGTCGTGCAGGACTCGCTGTCGGCGTTCCACGACGCCCTCTGCACCACCATGGCGCCTTGCAGCAGCCATGTCGGCGACGACGACGCACATAGAAGAGCATCGTCATCATCAGCAACAGCAGCAGAAGAAAGAACTAATGGCAATGGTGATCATGGTCAACTCGTCGTCCACAATGCTGCCGTCCTGCCAATGCTAGAATCATCACGTTGCCTTGTGGCAGCAGATCAAGCAGCAACAACTAACAACAATGGCAGTGGTGATCGTCGACTCCTCGTCCTAGACACTACTGCTATCCAGCCGCCAGCATCAGGTTGCATTCTGCACATGGCCTTCCCAAGCAAGTCATACCAGTCATCACGTCCAACAACGCTTCCATCTCGCTACCAGGAAGGGAGAAAACTAAGCAGCTTCAGCTTAGCGACATTGCCCCCTACTTTGAACTACCCATCGCCAAGGCTGCTAAAAAGCTGGATATATGTGCCACTGCTCTCAAAGGCATCTGTCGTAAAACATGGCGTATTACGCTGGCCATATCGAAAGGTGAGAAGCATCGATAGGCAAATTGCGACTCTACGGAGATCTGGTAATGGAGATGCAACAAGGAACGAGATTGAAACATTGATTGCTTCGAGGAGAAGGATAGTTGCTGATCTTGATCAATAA
More
|
||||||||||
| Protein seq | MAGDGGNGAADGGGEHLELDFFPSPLLDNFDVLELLDLSVLGDVDDDGAPPAPAPVQMSVDGAGGGRINKPGSSVDDLVDWSTAFGNNCSKIDGEYGGASTSSSAAPAPAPPQEDYCSGCQVLREVVHSNGLEITKLCIHGGVASGEFYHAILDVYRVSASAPAPALAHHSIIKGRGYDWVKQYLTEYALRRAGGGFAVVQDSLSAFHDALCTTMAPCSSHVGDDDAHRRASSSSATAAEERTNGNGDHGQLVVHNAAVLPMLESSRCLVAADQAATTNNNGSGDRRLLVLDTTAIQPPASGCILHMAFPSKSYQSSRPTTLPSRYQEGRKLSSFSLATLPPTLNYPSPRLLKSWIYVPLLSKASVVKHGVLRWPYRKVRSIDRQIATLRRSGNGDATRNEIETLIASRRRIVADLDQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0007350 | OsIR64_12g0007350.01 | Chr12 | 6478441 | 6484167 | - | NAM | ||
| CDS seq | ATGGCGGGCGACGGCGGCAACGGCGCCGCCGATGGAGGAGGGGAGCACTTGGAACTCGACTTCTTCCCGTCGCCGCTCCTGGACAACTTCGACGTGCTAGAACTGCTCGATCTCTCCGTCCTTGGAGACGTCGACGACGACGGCGCTCCGCCGGCGCCGGCGCCGGTGCAGATGAGCGTGGACGGCGCCGGCGGCGGCCGGATTAATAAGCCTGGTTCCTCCGTCGACGATCTTGTGGACTGGTCGACCGCGTTTGGTAATAACTGCTCTAAAATCGACGGCGAGTACGGTGGTGCGTCGACGTCGTCGTCCGCCGCTCCGGCGCCGGCGCCGCCGCAGGAGGACTACTGCAGTGGTTGCCAAGTGCTAAGAGAAGTAGTGCATTCCAATGGGTTGGAGATCACGAAGCTTTGCATTCATGGCGGCGTCGCTAGTGGTGAGTTCTACCATGCAATACTGGACGTGTACCGTGTCAGCGCCTCGGCCCCGGCTCCGGCGCTGGCACATCACTCCATCATCAAAGGGCGGGGCTACGACTGGGTGAAGCAGTACCTGACGGAGTACGCACTCCGGCGAGCCGGCGGCGGCTTCGCCGTCGTGCAGGACTCGCTGTCGGCGTTCCACGACGCCCTCTGCACCACCATGGCGCCTTGCAGCAGCCATGTCGGCGACGACGACGCACATAGAAGAGCATCGTCATCATCAGCAACAGCAGCAGAAGAAAGAACTAATGGCAATGGTGATCATGGTCAACTCGTCGTCCACAATGCTGCCGTCCTGCCAATGCTAGAATCATCACGTTGCCTTGTGGCAGCAGATCAAGCAGCAACAACTAACAACAATGGCAGTGGTGATCGTCGACTCCTCGTCCTAGACACTACTGCTATCCAGCCGCCAGCATCAGGTTGCATTCTGCACATGGCCTTCCCAAGCAAGTCATACCAGTCATCACGTCCAACAACGCTTCCATCTCGCTACCAGGAAGGGAGAAAACTAAGCAGCTTCAGCTTAGCGACATTGCCCCCTACTTTGAACTACCCATCGCCAAGGCTGCTAAAAAGCTGGATATATGTGCCACTGCTCTCAAAGGCATCTGTCGTAAAACATGGCGTATTACGCTGGCCATATCGAAAGGTGAGAAGCATCGATAGGCAAATTGCGACTCTACGGAGATCTGGTAATGGAGATGCAACAAGGAACGAGATTGAAACATTGATTGCTTCGAGGAGAAGGATAGTTGCTGATCTTGATCAATAA
More
|
|||||||
| Protein seq | MAGDGGNGAADGGGEHLELDFFPSPLLDNFDVLELLDLSVLGDVDDDGAPPAPAPVQMSVDGAGGGRINKPGSSVDDLVDWSTAFGNNCSKIDGEYGGASTSSSAAPAPAPPQEDYCSGCQVLREVVHSNGLEITKLCIHGGVASGEFYHAILDVYRVSASAPAPALAHHSIIKGRGYDWVKQYLTEYALRRAGGGFAVVQDSLSAFHDALCTTMAPCSSHVGDDDAHRRASSSSATAAEERTNGNGDHGQLVVHNAAVLPMLESSRCLVAADQAATTNNNGSGDRRLLVLDTTAIQPPASGCILHMAFPSKSYQSSRPTTLPSRYQEGRKLSSFSLATLPPTLNYPSPRLLKSWIYVPLLSKASVVKHGVLRWPYRKVRSIDRQIATLRRSGNGDATRNEIETLIASRRRIVADLDQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007400 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007490 | RBH | 0.0 | 0.0 | 0.092506 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0101300 | RBH | 0 | 0 | 0.0008295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0106400 | RBH | 0.01042 | 0 | 0.0022105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007330 | RBH | 0.0 | 0.0 | 0.0 |
