Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0004950 | OGI:12009680 | 15/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:3719116-3725140 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCTGATTTGCTCTTTTGGAGATGCTCTTTAGTAAGAACCCAGAGTCACACCAATCTGGCTTAGTCAAAGCAGTACTACTAGTACACAATACACACAATTACGCAAGGACTTAAACTGGCGCTACATCTATGGAAGTAACGACCAGGCGATGATGATCGACAGCTTACAAAACCCAAGCATGAAGTAACTTTGGCTCCTTGATGTCTTTCTAGCACAGAAGATTTCTTCCTTAACAACAGCCGTGTCATCGCCACCGTGATCTGTAGCCTCCATCCGGAGAATCAGCTTCCCTGTCCCTTCAACAGAAACAACACGTCGCCGGAGCACGACGAACCCATCATCATCGACCACCACCTTAGACCCTGTTTAGTTCCCAAACAAAGAATTTTCACCCAGTTACATCGAATATTTGGACATATACATGGAGTATTAAATATGGAAAAAAAAATAATTACACAGATTGCGTGTAAATTGCGAGACGAATCTTTTAAGCCTAATTGCGCCATGATTTGATAATGTGGTGCTACAATAAATATTTGCTAATGATGGATTAATTAGGCTTAATAAATTCGTCTCGCAGTTTCCAGGCGAAATCTGTAATTTGTTTTTATTATTAGTCTACGTTAAATACTTCAAATGTGTGTCCATATATCCGATGTGACACGCAGAAAATTTCAGTTCGCGAACTAAAGAGGCCCTTACCATCCTGAAAGTCAAGAAGCAACACATCCTCATCAATCCCAGCAGTTCGAGCAGTAAAACGAGCCCTGAAATCAGGCGATCCTTCAACGACTCCAACCGTGATGGTGGCCTCCACTGCACTCTGCAGATGTGCAAACACAAACTCCATCGTGCTGTCCTCTGTTGATTCCAGCTGTCTATGAGGAAAGCCAGGTTTAATCCTATGACCAGTGTGGTTGTGAACAAAAGCATGCTCGCTTAAAACCTTGTCTTCAGATGGGGGGTCCTCTGCTGCCCTTCACTTTCAAGTCAACCTCAACAACTACAGGGTTCACTATTACAATAGCTCGACTAGGACGTGTAAGTCTCAAACATGAATCCTGCACGCATGGGCGACAGAAAGAGGGGCAATCAGATCAACATGTTTCATAATCTTTGATAGGCTGTGTCACTTGCAAAGATACTGCACATGACTTCAATCCAACGGTTTGTAAGAAACATGTCACCATGCAGCAAGATGGGTAGTAAAAACTGTAGTTGTTAATGTGGACTGAAGTAATGATTGCATCTCTTTCCAAAAAAGAATAACTCATTGCTGCTAAGTGCTAGGTTAAGGATGAGATCATCCCCAAAATTTCATCACAGGAACAGTAAGAAAGCTTTGGAAAACATGGGTTCCCTCTATTTAGCTTTTGGTAGCAGTAAATTGGTTAACTACCAATGATAATGCACCCACTTGATTCATGACTGACGACAAATAAAACTAAAACAAAATGAAATGGACCAGAAATAATGAAGGGCTACACAATGCACATACCTGTGGTGAGGCAAGGGTCTGGCAGTGCTCTCTATCACAACGAAACAAGAAGTTCCTCTTGTTATCTTGTGAGTCACGCGTAGCAACGATACCATAGACGTGGAGTGGCCATTGGAGACCTCCCATGATCTCGATCACCTTCACTAAGAAGAATTGCATCATGCTAATTGGCAGATAATATGGTGGCACTGGCCTATCCGTGTTCCTCATTGGAGAAGCATCCGCTGGACACACAAATTCATCGAGTGATTATTGGACTGGAGCAGAAATTGACAACCAAATGACAAATGTGAGTAAGAAAATATACATATGAGTTAACTTCTTTTTTTTTTTTTACAATCTGCTTCCTTCCAATGGCTCCTGGTTCCCAAAATTCACTCTGTTCTTATAACTGTCCATGGCCACCCTTCAAGCCTTCAAACCCAAGACCCAGGAAAGAAATGCAAATTGCAAAATATGACTGCCCCAACTAGGTTTGTGTGGTTGGGCATCCCAATACATTGAAAAGTGTTCATCTATAAGATTAATATATGTGCGTGCAGTGCATCTACAACATACAAGATTGCTAAGTCCGTTCATTATTGCTGTCAAATGATTGTGTCAAAAATCACAAATGAGAGGGCGGTGCACAATGAAGATAGAAGAAATTAGATTGATTTTGAATCAGGCTAGCGAATCCAAAGAGCCAAAGAGAGAATATATATATACATACATACATATATATATACATACATACACATATATATATACATATATATATATATATCAGAGAAATCCACTTACTCTCGTCCTCGAAGGCACCGAATTTGCCGTACATCGTTTCCCAATTCTGCCGCGAGCATATGAGCCCATTAGGTAGCGGTGTGCAGTCCTCCTCCTCCTCATCGTAGCCGCCGGCGAGCGCTTCCTCCTTGGCAGTCTCCACCACCGTACTCGTGTGGCCGTGGCTAGCCCCGTCACCAGACTGGCCGGACTCCATCACCGCCGCCGCCGCCGGAAAAGTAGGGTTTGCCGGTTGGGAAGGGGAGTGAGGTGTCCGAGGATCTGCTTCTTCACCTTCTCCTATATCAATTATTTCCTCCGTTTCAAAAATAGAGAAAATTCAATGCATACTTTTTCCTTATTAGAAAAAAAATTCAATGTATACTTAATACCGTCATTTAGGCTGGTTCGGTTTGGAGGGAATTGAAAAGGATTGGAAGGAATTAAGAGGGAATAATTTCACACCATAATAGGTGTTGAATAAATCTCCTTTAGTCCCTCCCTCATGGGGATTAACCGATCAAGAATTTACTAAGTGCAGCATTGCTCGGTCTATGGGACCCACATGTCAGTGAGTAGTGCAGTACTGCAGAAGACCTCCACTCAGTCTTTTTGGTACTAAACATCTACACGGTACAAACCCGCGTTAATTTCTTCCTTTTCGGTCCATGAGTTAGTACCGTTAGCTTTTAGTTTGTGAGATTTGGGAAGCGAGGCGAGGCGAAGCCTCCCCATTTCCTTCCCCAATCACCGCCAACCACAGCCCACTGCCTTTAAGCTCATCACACCCCGACTCGCCCCGCCGGCCTCCTGCGATAGCGAGAAGAGCAAAGAAATAGAACTCGAGAGAAATAGAGAGATGAGAGACTTGACATGTGAGTCCAGGGGTATTTCAGAACTTTCACACGGTTTCTCTCTACTATTCAATCATAAATGAATATTAGGATAGGTGTAGTGTTCATGAGCTGATTTACAAAGTGCATTTCCCTTGTGCAGTGTTCTATAGAAAAACCGCAAAGTCATGATACTACCTCATTTTTTAAATGTATGATGTCGTCGACTTTTTTCATAATGTTTAATCATTTGTTTAATTTAAAAATTGAATACAAATATATAAAAGTATAAGTTAAGATTATAGTTTATTTGATAACAACAAAATAAATAATATTTATATATTTTTAGTAAGACGAATGGTCGAATGTTACGCAAGAAGTCAGCGGCGCCATACATTTTAAAATGGAGGGAGATATGGGATTAAAAATGAAAGTTAAAGCCATGTTTTTTTTTGGTAGACAAAGTTTTGGTTTTTATTTTTTCCTAATTTTCACCGGTTTTCTAAAGGAATGGTTTTGTTAGGTGGGTGGGGCGTATGATCGTTTTCCTCCACTAATTTTGTTTGCATACACGTAGGCGTACAATGTGCGGTGAGGACCCATTGCTTGTGGTTAGTGTCCAAACATCCGATATGACAAGGACTAAAGTTCAGTCTCTGGATCCAAACACCCCCTAATCCCAAGGGACAGAGGCCGCGTCCCATCCAAGGTTGGGTTGGGTTGCGTAGCTTGGGGTTGCCTACTAATCCCCCCATCCAAAAAAACTTAACCTAATACGTGGATGAGACATAATCTACAATAAATCTAGACAGAGGTTAAGTTTTTTTTTTTTTGACAGAAGGAGTATCCGAGTAAGTTATGGCCGCCTGTTGCAGCTTGGGTTGCCTAGTTTGCGGGCTCCTCGGTGCAGCTCTTTTCCTGGGTTGCTTGGAACCAGAGGGGTTGCCACTTGGCCGTCTACTCGATCGGCGGGTCGCTTACGCGAACCTGCTGACCGACGAGCTCGAGTACTCGGATTTGAAAGCAGAAACATCAGGCAATGAACATTTCAATGCTCAAGTACTCTCTATCTTGCTCGCACTCGCACATCTGCAAGGTGTTCTAATCCTAATTGTGTAGTGATTCGATTGCAAGCAAATTTACCCATTTCCTCCTATCCACGTGTTAATTAACATTGCATTTTGGATTTTACTGATCAAACTCATATGAACTACAGCATTGGAACTCACAGGTCCTAGCCGTGCAATTCTTCTATTGGATAACCCCTTATTTGAGATTGACCTCAAAGTGAAGGGTCAAGGATCACCATCTGAAGACAAGGCTTTAAGCTACTATGTGTTTCCATCGGAATGTCATCGCCATCGATTCTCCATCTGCACAGGTTTTCAAGAAAAGAAAAACGATGATGAGCCAACACTCTGGCATGGATATTCAGTAAGTACATGTAGACTGTACTCTGAAACAAGAGCAAGCGGCGGGCGAGCGCGCGGTCGGCGGAGCGGAGCGGCGGCGTGCGGCTGGAGCAAGCGGGCGAGCACGTGGCGGACGGCGGCGGGTGAGCGTGTGGCCGGCGGAGTGGAGTGGGCAGTGGCCGGGCCATCTGCCGCCAGCCGCCGGCTGCGGTTCAGCGTCGAGAAGATTGGAGAGGAAAAGAGAAGAGAAGATAGAAAAGAAAAGGGAAAAAACGAGAAGAAATAAGATATGTGAGTCTCATTTTTTTTTCCTCACACTTACATGTGGACTTTTTTTTCTCGTAAACTAAAAAAAATCCTATTTTGTAAAATTTGTAAAAAAAATTAAATTTTGTTGAGGGACCTCCAGTGAACTTATTCCTTAATAAATTTTGTAAAAATCTTGAAATACGTCTATTTTTTCTCCCTCAACTCTTGCTCTTGGTTGAATCACATCCCTCAACCTTAAAACCGGGTATAACATGTCCCCCAACTTTAAAAACTGGTACAAATTAACTCCTTTGAGGTTTTTGAACCGGCTTTTGCTGATGTGGCAAGTTGATTTGATCTAAGTGTGCTGACGTGGCACCTAGTCATTAAAGGAGTTGAAAATAGAAAACGGTCCCACATGTAAGTGATAATGGTAGAAATAAAAAACAGTAGGCCCTACCTGTCAACCATCTTAACCTTCTCTTCTTCCTTATCTCTTTCTCTGGTAGGTCTGGGGTGGACAGCCACGTGCTTGGGCGCTGCAAACGGTACCACGGCCGAGGGGGATGACGGTGGCCGGCCGACGACTCCTCTTCGCGTGCGCCGCTAGCTGGGAAATCATCTCCCTGCGCGGCGCCAGTTGGCGAGCTCCTTCCCCGCCGCGTGGCCGGCCGACGACACCTCTCCCCGGGCGTGACCGGCAATCGAGCTGCTCCCCCCACGCATGGTTGGCCAACAACTATCTCCCCGTGCACGGCTGGCCAGCGAGCTCCTCTCCCGCGCGTGGCCGGCCGGGACCTCCTCCTCAGCACACGGCCGGTCGGCGAGCTCCCCCCCTCCCCACCCCCGTGTGGGCGGCGGGCGAGCAACTCCGCCGCGCGCAACCGGTCAACGACTCCTCTCCATATGCACGGCCGCCCGGGAGCTTCTCTCCCCGCGCGGTGCTGGATGGCAAGCTCCTTCCCTGCGCATGGCCAGCCGGCGACTCTTCTCCCCACGCACGACTCGCTGGGAGCTCCTTCATGTGTGCGAACGGTTGCGATCTCCTCCTCATGTGCACCCCTGCCGGCCAGGTCCTCTCCACGGGCACGAGATCCTCCCACGCCGACGAGCTCCTCCTTCCATGTGCGGCTGTCTGGCAAGCTCCTCTCCCACGCGCCGCAAAGCTTGGTACCGTCGCCGCCGCCCGGTCTATTGCTGATGGAAGGTGAGAGAGAGGACGAAAGAGATGAGAGAGGCGGGAGAGGTGTGAGAGAAGATGGGATGAGGT
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| CDS seq | CTCATCCCATCTTCTCTCACACCTCTCCCGCCTCTCTCATCTCTTTCGTCCTCTCTCTCACCTTCCATCAGCAATAGACCGGGCGGCGGCGACGGTACCAAGCTTTGCGGCGCGTGGGAGAGGAGCTTGCCAGACAGCCGCACATGGAAGGAGGAGCTCGTCGGCGTGGGAGGATCTCGTGCCCGTGGAGAGGACCTGGCCGGCAGGGGTGCACATGAGGAGGAGATCGCAACCGTTCGCACACATGAAGGAGCTCCCAGCGAGTCGTGCGTGGGGAGAAGAGTCGCCGGCTGGCCATGCGCAGGGAAGGAGCTTGCCATCCAGCACCGCGCGGGGAGAGAAGCTCCCGGGCGGCCGTGCATATGGAGAGGAGTCGTTGACCGGTTGCGCGCGGCGGAGTTGCTCGCCCGCCGCCCACACGGGGGTGGGGAGGGGGGGAGCTCGCCGACCGGCCGTGTGCTGAGGAGGAGGTCCCGGCCGGCCACGCGCGGGAGAGGAGCTCGCTGGCCAGCCGTGCACGGGGAGATAGTTGTTGGCCAACCATGCGTGGGGGGAGCAGCTCGATTGCCGGTCACGCCCGGGGAGAGGTGTCGTCGGCCGGCCACGCGGCGGGGAAGGAGCTCGCCAACTGGCGCCGCGCAGGGAGATGATTTCCCAGCTAGCGGCGCACGCGAAGAGGAGTCGTCGGCCGGCCACCGTCATCCCCCTCGGCCGTGGTACCGTTTGCAGCGCCCAAGCACGTGGCTGTCCACCCCAGACCTACCAGAGAAAGAGATAAGGAAGAAGAGAAGGTTAAGATGGTTGACAGATGGAGAATCGATGGCGATGACATTCCGATGGAAACACATAGTA
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| Protein seq | LIPSSLTPLPPLSSLSSSLSPSISNRPGGGDGTKLCGAWERSLPDSRTWKEELVGVGGSRARGEDLAGRGAHEEEIATVRTHEGAPSESCVGRRVAGWPCAGKELAIQHRAGREAPGRPCIWRGVVDRLRAAELLARRPHGGGEGGSSPTGRVLRRRSRPATRGRGARWPAVHGEIVVGQPCVGGAARLPVTPGERCRRPATRRGRSSPTGAAQGDDFPASGAREEESSAGHRHPPRPWYRLQRPSTWLSTPDLPEKEIRKKRRLRWLTDGESMAMTFRWKHIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0004950 | OsIR64_12g0004950.01 | Chr12 | 3720070 | 3721593 | - | NAM | ||
| CDS seq | ATGGAGTCCGGCCAGTCTGGTGACGGGGCTAGCCACGGCCACACGAGTACGGTGGTGGAGACTGCCAAGGAGGAAGCGCTCGCCGGCGGCTACGATGAGGAGGAGGAGGACTGCACACCGCTACCTAATGGGCTCATATGCTCGCGGCAGAATTGGGAAACGATGTACGGCAAATTCGGTGCCTTCGAGGACGAGACGGATGCTTCTCCAATGAGGAACACGGATAGGCCAGTGCCACCATATTATCTGCCAATTAGCATGATGCAATTCTTCTTAGTGAAGGTGATCGAGATCATGGGAGGTCTCCAATGGCCACTCCACGTCTATGGTATCGTTGCTACGCGTGACTCACAAGATAACAAGAGGAACTTCTTGTTTCGTTGTGATAGAGAGCACTGCCAGACCCTTGCCTCACCACAGGATTCATGTTTGAGACTTACACGTCCTAGTCGAGCTATTGTAATAGTGAACCCTGTAGTTGTTGAGGTTGACTTGAAAGTGAAGGGCAGCAGAGGACCCCCCATCTGA
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| Protein seq | MESGQSGDGASHGHTSTVVETAKEEALAGGYDEEEEDCTPLPNGLICSRQNWETMYGKFGAFEDETDASPMRNTDRPVPPYYLPISMMQFFLVKVIEIMGGLQWPLHVYGIVATRDSQDNKRNFLFRCDREHCQTLASPQDSCLRLTRPSRAIVIVNPVVVEVDLKVKGSRGPPI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0004950 | OsIR64_12g0004950.02 | Chr12 | 3719116 | 3725140 | - | IsoSeq | ||
| CDS seq | CTCATCCCATCTTCTCTCACACCTCTCCCGCCTCTCTCATCTCTTTCGTCCTCTCTCTCACCTTCCATCAGCAATAGACCGGGCGGCGGCGACGGTACCAAGCTTTGCGGCGCGTGGGAGAGGAGCTTGCCAGACAGCCGCACATGGAAGGAGGAGCTCGTCGGCGTGGGAGGATCTCGTGCCCGTGGAGAGGACCTGGCCGGCAGGGGTGCACATGAGGAGGAGATCGCAACCGTTCGCACACATGAAGGAGCTCCCAGCGAGTCGTGCGTGGGGAGAAGAGTCGCCGGCTGGCCATGCGCAGGGAAGGAGCTTGCCATCCAGCACCGCGCGGGGAGAGAAGCTCCCGGGCGGCCGTGCATATGGAGAGGAGTCGTTGACCGGTTGCGCGCGGCGGAGTTGCTCGCCCGCCGCCCACACGGGGGTGGGGAGGGGGGGAGCTCGCCGACCGGCCGTGTGCTGAGGAGGAGGTCCCGGCCGGCCACGCGCGGGAGAGGAGCTCGCTGGCCAGCCGTGCACGGGGAGATAGTTGTTGGCCAACCATGCGTGGGGGGAGCAGCTCGATTGCCGGTCACGCCCGGGGAGAGGTGTCGTCGGCCGGCCACGCGGCGGGGAAGGAGCTCGCCAACTGGCGCCGCGCAGGGAGATGATTTCCCAGCTAGCGGCGCACGCGAAGAGGAGTCGTCGGCCGGCCACCGTCATCCCCCTCGGCCGTGGTACCGTTTGCAGCGCCCAAGCACGTGGCTGTCCACCCCAGACCTACCAGAGAAAGAGATAAGGAAGAAGAGAAGGTTAAGATGGTTGACAGATGGAGAATCGATGGCGATGACATTCCGATGGAAACACATAGTA
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| Protein seq | LIPSSLTPLPPLSSLSSSLSPSISNRPGGGDGTKLCGAWERSLPDSRTWKEELVGVGGSRARGEDLAGRGAHEEEIATVRTHEGAPSESCVGRRVAGWPCAGKELAIQHRAGREAPGRPCIWRGVVDRLRAAELLARRPHGGGEGGSSPTGRVLRRRSRPATRGRGARWPAVHGEIVVGQPCVGGAARLPVTPGERCRRPATRRGRSSPTGAAQGDDFPASGAREEESSAGHRHPPRPWYRLQRPSTWLSTPDLPEKEIRKKRRLRWLTDGESMAMTFRWKHIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 3720838 | 3721398 | - | OsIR64_12g0004950.02 | OsIR64_12g0004950.02,OsIR64_12g0004950.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.314942 | 0.000000 | 0.563956 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0066100 | RBH | 6.7593815 | 16.5283355 | 3.496415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005020 | RBH | 0.409850 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
