Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0003560 | OGI:12006610 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:2404768-2407311 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATACAATGGGATCTTGAATATGATGACAAACAAATGTGGTTTTCTTAACAAGAAACCTGAACGGTTTCTCATATTTACATCAAAAACGCTCCAAAACTAACCTATGACAGCAATCCACGGATCCCCCTGTGTCGATGTTTCTAATATTACAGGTAGTTTCACCTGGCAGAGAGCAGACAGAACAGCAGAAATTTCAAGCAGCTAGTTGCAGGGTCCTAGCTTAGTGGATCATGATCTGTCATGAATATGAGGACTCTACTGTTTTTGCTGGTTGTTATTTTTCACCAGGGGGGTTAACTTCTGATGATGGCAAGCTATTCCCCCCTTCCGCCGGTGGAGTATATAATGTCCGATTCACCTGGTCAGGTTCATTTCTGAGAACCTGCGATGTCCTTGGCGAATGACCTGTTCCGACGAATAGGCAATTGCATTGATCTGATCTTGATGCTTCAGGAGAACATGGAGGTAATGGTATTATCACTGCACTTGGTACAGGAGACATCGTGTGCTTGCTATCAGGGTAGTCGCACAACGAAATTCTACAAACTGGGCATGTTGAATGGTGCATTAGCCAAATATCTATGCAGGCCACGTGAAAGCCGTGGCCACAGTAGGGAAGAACACGGAGCACATCTTTCTCTTCGTATTCTGCAAGACAGACTACACACCTGCCAGTGATGAAGCAAACAGTTTAGAATCTAGGCTTGGTGGAGTTGGGAACAATTAGTAAAAATCGTATACAGTGTCATCTCATTATTTCTACTTTATTTAGTACAAGACCATAAGAAAGCAAACAACACCAATATTAGCACACCAATATTAGCATCTCACTCCAGATAACAGTCAAATGCATCAAACAATCAAGCTAATCCTCAATAGCAGTACCAGCATTGTCTTTCAAAAAGAAAACCTTGCTATTAGCACATCAAGCACAGATGAGGGGGTTTAAGTGTTTGACCCACTTGATGACAGTGACCCATCCTTACCCAAGAGCAGTTAAAATTTTGTATTCCTTTTGATTGATATAGTAGCCTTAGCTGTTCAGTAGCAATGCAAGTTCAGGGATCTCAGGACTCATAGTCAATCTCCAATCAAGCACAATAATCAAGACTTCGGTACTGAAGCAACTTTTTTTTTCCTCAGGGACCAACACCAACATGGACCTAGTTAATCTATCACATAACTTTTTTTTTTCCTGCACGGTGCTGTTTTTTCAAGATGTTTTAGTAGCAGTTGTTTATGACTATGGCTTGCCATGATCAGATATGTATGATACCAGGAAGTGAATAGAAGCAAGCAGACACTTCCCAAATCTCAGTACAGAAAATGCTAAAGGCAACAGCTAATTTTAGGCAACAGGTTGAGTGACTGTTGCTCACAAATTAGCGGTTGTCTAGCACGGCTCAGTAACTGAGCTTCTCACTAATATTAGTAGCTCATAGTGCAGTGTAAGCAACAGTCACATTCAACACTTGCAAACTGAACCATGTGACATACCCAAATCCTCCCCCAAGAATAACACTACTAGTAGTACTACTAGTTGCATGTTCACGCATACGTGAAGAATGAGAGAACAACAAATGAAAGTAACATCCGCAAGATTCCCCCAACTAAACAGTGATAATGACAAGTGCCGAAGCAGAAAGTATCCAATCCTAATTTTATAATGGGTAGCAGATCCCCTTTCCTCACCCATCCTGAGGGCGCCCTCGCAACTACGAAGACCACAATTTCAACGCCACTACTCACTTCCCCCCCAATAATCAAGCTAATACTGATATAGTAGTAGAACGTGCGGAATCTGGTTGTGAAAGTTCCACTCAAACCGCAGGTTCCACTCGTGATTGGATTCACCCAACGAACGAACAATCAATTCAATTCAATCCCCAATGCAATTAAACAATCGGAGTAGCTGCGGCGCCGCAACACCGCAGAATCGAAGCTTGGATTCGACGCAAACGCGACGGCGTACAGTAGCACGGGCGGAAAACGAATCGGCGATGCGGGGGGAAGGCGAATCGAGGACTTACTGGGTGGAGGCGGAGGCGGAGGAGGAGGCGGCGGGGGAGAAGGCGCGGGTGGGGAAGGCGGCGACGGCGGCGGGGTCGAGGCCCCCGGTCCCGGAAGCGGCCCCGGCGGCCGACGAGGGCTGGTGGTGGCCGTGGCGGTCGACGTAGATGGAGAGGACCCCCGATACGGCGAGAGGGGAGGCGCGGCGGAGGCGGGCGCGGCCGCGGCGTCGCCTGAGGAGGGCGCAGGCGAGGCGGGAGCAGACGAAGACGATGAAGAGGACGCTGACGCAGAACCCCAGCAGCGTCAGCACCATGCTCCTCGACACCCCCGCCGCCGCCATGCCCGCCGCCGCAGTGCCGATCCCGCAACGGCGCCGCCTCCTCCTCCGCTCGAGTCCACTACTACTCACTCGACAAAAGCGAGGCTACATGGATGGATGGGATGGGGATTGGTTGAGGTGGAATTTTATGGAAGTTGATGGGATGGGATGGGATGGTGGGAGGTGATGCGATTTTGCAATGTCAACCGC
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| CDS seq | ATGGCGGCGGCGGGGGTGTCGAGGAGCATGGTGCTGACGCTGCTGGGGTTCTGCGTCAGCGTCCTCTTCATCGTCTTCGTCTGCTCCCGCCTCGCCTGCGCCCTCCTCAGGCGACGCCGCGGCCGCGCCCGCCTCCGCCGCGCCTCCCCTCTCGCCGTATCGGGGGTCCTCTCCATCTACGTCGACCGCCACGGCCACCACCAGCCCTCGTCGGCCGCCGGGGCCGCTTCCGGGACCGGGGGCCTCGACCCCGCCGCCGTCGCCGCCTTCCCCACCCGCGCCTTCTCCCCCGCCGCCTCCTCCTCCGCCTCCGCCTCCACCCAGTGTGTAGTCTGTCTTGCAGAATACGAAGAGAAAGATGTGCTCCGTGTTCTTCCCTACTGTGGCCACGGCTTTCACGTGGCCTGCATAGATATTTGGCTAATGCACCATTCAACATGCCCAGTTTGTAGAATTTCGTTGTGCGACTACCCTGATAGCAAGCACACGATGTCTCCTGTACCAAGTGCAGTGATAATACCATTACCTCCATGTTCTCCTGAAGCATCAAGATCAGATCAATGCAATTGCCTATTCGTCGGAACAGGTCATTCGCCAAGGACATCGCAGGTTCTCAGAAATGAACCTGACCAGGTGAATCGGACATTATATACTCCACCGGCGGAAGGGGGGAATAGCTTGCCATCATCAGAAGTTAACCCCCCTGGTGAAAAATAA
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| Protein seq | MAAAGVSRSMVLTLLGFCVSVLFIVFVCSRLACALLRRRRGRARLRRASPLAVSGVLSIYVDRHGHHQPSSAAGAASGTGGLDPAAVAAFPTRAFSPAASSSASASTQCVVCLAEYEEKDVLRVLPYCGHGFHVACIDIWLMHHSTCPVCRISLCDYPDSKHTMSPVPSAVIIPLPPCSPEASRSDQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGEK |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0003560 | OsIR64_12g0003560.01 | Chr12 | 2404768 | 2407311 | - | NAM | ||
| CDS seq | ATGGCGGCGGCGGGGGTGTCGAGGAGCATGGTGCTGACGCTGCTGGGGTTCTGCGTCAGCGTCCTCTTCATCGTCTTCGTCTGCTCCCGCCTCGCCTGCGCCCTCCTCAGGCGACGCCGCGGCCGCGCCCGCCTCCGCCGCGCCTCCCCTCTCGCCGTATCGGGGGTCCTCTCCATCTACGTCGACCGCCACGGCCACCACCAGCCCTCGTCGGCCGCCGGGGCCGCTTCCGGGACCGGGGGCCTCGACCCCGCCGCCGTCGCCGCCTTCCCCACCCGCGCCTTCTCCCCCGCCGCCTCCTCCTCCGCCTCCGCCTCCACCCAGTGTGTAGTCTGTCTTGCAGAATACGAAGAGAAAGATGTGCTCCGTGTTCTTCCCTACTGTGGCCACGGCTTTCACGTGGCCTGCATAGATATTTGGCTAATGCACCATTCAACATGCCCAGTTTGTAGAATTTCGTTGTGCGACTACCCTGATAGCAAGCACACGATGTCTCCTGTACCAAGTGCAGTGATAATACCATTACCTCCATGTTCTCCTGAAGCATCAAGATCAGATCAATGCAATTGCCTATTCGTCGGAACAGGTCATTCGCCAAGGACATCGCAGGTTCTCAGAAATGAACCTGACCAGGTGAATCGGACATTATATACTCCACCGGCGGAAGGGGGGAATAGCTTGCCATCATCAGAAGTTAACCCCCCTGGTGAAAAATAA
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| Protein seq | MAAAGVSRSMVLTLLGFCVSVLFIVFVCSRLACALLRRRRGRARLRRASPLAVSGVLSIYVDRHGHHQPSSAAGAASGTGGLDPAAVAAFPTRAFSPAASSSASASTQCVVCLAEYEEKDVLRVLPYCGHGFHVACIDIWLMHHSTCPVCRISLCDYPDSKHTMSPVPSAVIIPLPPCSPEASRSDQCNCLFVGTGHSPRTSQVLRNEPDQVNRTLYTPPAEGGNSLPSSEVNPPGEK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.081857 | 0.203550 | 0.519269 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0149100 | RBH | 0.131627 | 0.0 | 3.615345 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05370 | RBH | 0.000000 | 0.0 | 0.352085 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0149100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003320 | RBH | 0.103633 | 10.116167 | 3.473054 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003550 | RBH | 0.0 | 1.965714 | 1.676402 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003560 | RBH | 0.324708 | 5.156812 | 4.842837 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003390 | RBH | 0.0 | 0.181637 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003580 | RBH | 0.836034 | 8.773562 | 15.169590 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0042500 | RBH | 1.3813465 | 3.238003 | 1.640984 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003460 | RBH | 0.0 | 0.0 | 0.477779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0046000 | RBH | 1.4382925 | 2.4794435 | 3.2704385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003350 | RBH | 0.070747 | 0.103765 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003560 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003580 | RBH | 0.0 | 14.416095 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003530 | RBH | 0.248752 | 0.0 | 0.724800 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003470 | RBH | 0.0 | 5.426088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003380 | RBH | 0.123842 | 4.215298 | 0.691436 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003620 | RBH | 0.000000 | 7.508441 | 3.146840 |
