Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0000410 | OGI:12000810 | 8/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:333434-333910 | ||||||||
| Gene Symbol | LBD12-1 | ||||||||||
| DNA seq | ATGGCGGGAAGCGGGAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTTCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCCCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAA
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| CDS seq | ATGGCGGGAAGCGGGAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTTCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCCCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAA
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| Protein seq | MAGSGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQLALAHAETAALQLQLQQQHQDQDDHHHQQCILENAAAHHQLMLQEAFLKKESMWT |
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| Function | LOB domain-containing protein 12 [UniProtKB/Swiss-Prot:Q8LBW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0000410 | OsIR64_12g0000410.01 | Chr12 | 333434 | 333910 | + | NAM | ||
| CDS seq | ATGGCGGGAAGCGGGAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTTCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCCCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAA
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| Protein seq | MAGSGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQLALAHAETAALQLQLQQQHQDQDDHHHQQCILENAAAHHQLMLQEAFLKKESMWT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.141593 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0106200 | SBH | 0.0 | 0.315234 | 1.917433 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01550 | SBH | 0.0 | 0.211715 | 0.492873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0106200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000480 | SBH | 0.0 | 0.0 | 0.689356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000490 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000480 | SBH | 0.0 | 0.0 | 1.244020 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000490 | SBH | 0.0 | 0.064116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000450 | RBH | 1.097313 | 0.000000 | 0.624039 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0005100 | RBH | 1.922849 | 1.1640765 | 7.5223515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000470 | RBH | 0.0 | 0.0 | 0.044921 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0006300 | SBH | 3.2499185 | 3.0711835 | 12.515373 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000340 | SBH | 0.109293 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000480 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000490 | SBH | 0.0 | 0.966770 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000490 | RBH | 0.257576 | 15.881316 | 3.213293 |
