Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0000020 | OGI:12012550 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:22907-26026 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGGTATGAAACTTTTCTCCTCCTTGTAACACTTCATTCACATCAATCAATATACAGTATATATAACACATAATTGTAATTTCTAATCATAGTAATATATATACATGCATATATTATTGACGCCCGAGGTAAAAGCAGATCTCCACGGAGGAGTTGGTCAACCGAATGTCTTCTCGCTGCTGTAGCACAAGTAGAGGAAGCCATCGCCCTCATCTTTGTATGACTCATACACACTGCCCATCAGCTGAGCTGCAGCCACAACAAAATTGTATGTCTGAAGCTTCAACAGAGGATCAAGCGGGACCCAAAAAACACTACTTCATATGCAAAACTCACCAGTCTGGGGCAAAGTGTTGTTGACAAACACAAACAACGCTGTCCCTGGAGACAAATGTAGCCTGGAACGAAGTATGAAAATAAACTGCCCAACTGGCATGTTACATGGAACCAGGTACCTGCAATTACCACTGCTTTTCAGGCTTCCAAATTCAACCAGCTTCTAAGAACAGGAGACTGGCTACTTACTTGCGCTTCTCCATTTCTGGAAGATTACTACTCGAAAATTTCTCAACAATGACCTGCCAACATAGATACTAGCATGTTAGCATAAAATTCAAGCAACACATAGACAAACTAAATAAGGGTTAATTGGATCCATGCCATTAAAAATATGTTGATTTCAAAATATACTACTAGTATTCACGTATTTGGAACTGTGCCATTATAATTTTACACATATTTGAGATATACCACTAATTACCCCTTGGATTTATTTATGAAAAAAATTGAACCAACCTGCCCTTTTCCCCTTCTTTCCCTTTCTCCTTCCTCCTCTCTTCCATGGCGTGAGAGACAGGCGATAATTCGGCAACGGCAGCGGCAAGCGTGACCAACAATGGACATGGCCACCGCAGCCGCCATCTCCTCCCTCTTCGGTGCTCCTTCAGCCAGGATGTCCATGTCTCCCTCCACCTCGTGCCACCGCTGGTGTCCTCCTGCGCGGAGCTCCACACTGACGACAACGTTGCCATGGGGCCCACGGTCCCCACCGCCAACGGCATCTTCCTCCAACTACCCCGACAATGCAGCTCCTCCCTCCCCTAGTCCCTCCCTGCGGCTGGCAAGGTGGAAATGGGGAAGATGGAGGCCGACGCTTGATGGAGATGGTGACGATGGTGTCCTAGATCCGTCCGCCTCTCCTCGCAGCGAGGAGCCCTGGGCGGTGGCGACGACAATGCCAAAGCAGCAAAGGACCAAGGAAAGAGCAGCGAAGAGTGGCCACTTCTCCTCTCCGGCGAGCTCCTGCACCTCCCTCACCACGCTCGCAGCTGCCCGATGCGCCATCATCGCCTCCTCCAGTCCAGCAACTGCCTCCTCCACCTCATCACCGATGACCACCTCGACGCCCGACGCAGCAAGGACGGCCTTCGTGAAGAGCACCGGTGGACCTGCACGGTGTTGTCCAGCGTCACGAGCTCCGGCGGCGAACGCAGATGGGTCGACCCAATCATAGAGCAACAGGGAAGCATCAACAACGGGATTTGGGTCTAAGAGGAGCATGAGCAGAGAAAGAGGAGAGGACAAGGGAAGAGAGAAGTAGAAGATGAGGGTATTTTTTTCTAATGCATGCAAAAATACGTATCTTAGTGGCATCACTGAGATTACAAACAAGCAACAATGGCATCGTTATAAATACATAAATAGTAATGGTATATTTTAAAACCGACAAATTTTTAATGGTACAGATGTAATTAACCCAAATAAGGAATATGGCCTTCAATTAAGGGCAGAACGAAAAGTAGTCGGTGATTTAGTCTCACATCTCATCAGTTTCAGTGTATTTCCATGGAATTCAATGATTCATAAGGTCCATCTAGTACTTAACAAACCAATTCACAACAGAGTTGACTGAAGCTAACTTTGCTGAAAAAAAAGGCTGGCAGTGAAACTTAAACTATTTATATCTAGGAATACCGCAAGAATGGTGTTCCATATATATGATTTTGACCCTGAATCCTGATTCACTGTAACATAAAACAGCTAAGAAATATAATGGCCAAGGTCAACAACTCGCAAATAATAGAAGCCACCTACCTACCCTTTTTCATTTTGTACAATGGTATCAAAATAGAAAGTGTGTGATCACAGCCTTGTTGGTAGATGAATAAAAATAGAATATGTAATGAAGCAGCACCTCCATCCTCTTATTACAAGCTAGATAATATTACCCAAAACCATGGATCGCATATACGCTCTGCCATGAAACTGCCACACGCAAATGTGCACTTGTGTTGGCAAGAACTACTGGCTGACACAAAGGAGAACCATATACAATGTCTGATTTTTGCGCAATCATCATCAATACGGTACGGGTAAAGCTCCTATCCTGAGTTTCTTGTGCCGCTCAGGAGAAACTTGAACGAATTTGAATAACATCTAGAACAATCACATGATTATATGATGCACTATTGTGACACAATGATGAGTCTCATACTCCAATGATATGTTTATAGAAGTGCATGTGAAGAAGAAAACATACAACAAAAGAATCACATGCCGCCATAGCAGTCGGCTGTCACGGGTGAAGGGAATAATCGGGTGTTGTGTGTGTGTTTTTCTGTATGTTGGGGTAGCAGCAAGCAGGAGGAATTTGCAGTGAAAATTGATAGCAGTGATGAAGCATCAAAGCATAGGAGAAGAAATAGTACAGGGATCCTGTCGGGGTAGGAGGCGATCATGGCGGCCGACTCCTTGGCCCTCTCCTCTGTAAACAAGAATTCGATATGAGTCAATACTATCCATGAACATGAATAGTAAATCTGAAAGGAAGGAATTGAGGAGTAGTAGCTAGGAACTAACCCAAGGTGAACTCCTCCTTGAAGGGCTTGGGCTTCATCTCTATCTCTAATTCAAATGAGTCTCTCTCGTCTTCTTCCTTGATGCGAATCTCTCTGTAGCTAGGGTTCGCTGGTTGCTTGCGTGCTGGTTTGGCTTTGGATTGAACAATTCGGTGGATAGACGTGTAGACTCCAGAAGAAGAGGAAAGGACGAGAAGAAGGAAAGAAGAGCAAAATAAAGCCCAAAACAAAAAGGAAGAAGAGCCCAGCCCAGCCCAGCCCAT
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| CDS seq | ATGCCACTAAGATACGTATTTTTGCATGCATTAGAAAAAAATACCCTCATCTTCTACTTCTCTCTTCCCTTGTCCTCTCCTCTTTCTCTGCTCATGCTCCTCTTAGACCCAAATCCCGTTGTTGATGCTTCCCTGTTGCTCTATGATTGGGTCGACCCATCTGCGTTCGCCGCCGGAGCTCGTGACGCTGGACAACACCGTGCAGGTCCACCGGTGCTCTTCACGAAGGCCGTCCTTGCTGCGTCGGGCGTCGAGGTGGTCATCGGTGATGAGGTGGAGGAGGCAGTTGCTGGACTGGAGGAGGCGATGATGGCGCATCGGGCAGCTGCGAGCGTGGTGAGGGAGGTGCAGGAGCTCGCCGGAGAGGAGAAGTGGCCACTCTTCGCTGCTCTTTCCTTGGTCCTTTGCTGCTTTGGCATTGTCGTCGCCACCGCCCAGGGCTCCTCGCTGCGAGGAGAGGCGGACGGATCTAGGACACCATCGTCACCATCTCCATCAAGCGTCGGCCTCCATCTTCCCCATTTCCACCTTGCCAGCCGCAGGGAGGGACTAGGGGAGGGAGGAGCTGCATTGTCG
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| Protein seq | MPLRYVFLHALEKNTLIFYFSLPLSSPLSLLMLLLDPNPVVDASLLLYDWVDPSAFAAGARDAGQHRAGPPVLFTKAVLAASGVEVVIGDEVEEAVAGLEEAMMAHRAAASVVREVQELAGEEKWPLFAALSLVLCCFGIVVATAQGSSLRGEADGSRTPSSPSPSSVGLHLPHFHLASRREGLGEGGAALS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0000020 | OsIR64_12g0000020.01 | Chr12 | 25455 | 26026 | - | NAM | ||
| CDS seq | ATGGGCTGGGCTGGGCTGGGCTCTTCTTCCTTTTTGTTTTGGGCTTTATTTTGCTCTTCTTTCCTTCTTCTCGTCCTTTCCTCTTCTTCTGGAGTCTACACGTCTATCCACCGAATTGTTCAATCCAAAGCCAAACCAGCACGCAAGCAACCAGCGAACCCTAGCTACAGAGAGATTCGCATCAAGGAAGAAGACGAGAGAGACTCATTTGAATTAGAGATAGAGATGAAGCCCAAGCCCTTCAAGGAGGAGTTCACCTTGGAGGAGAGGGCCAAGGAGTCGGCCGCCATGATCGCCTCCTACCCCGACAGGATCCCTGTACTATTTCTTCTCCTATGCTTTGATGCTTCATCACTGCTATCAATTTTCACTGCAAATTCCTCCTGCTTGCTGCTACCCCAACATACAGAAAAACACACACACAACACCCGATTATTCCCTTCACCCGTGACAGCCGACTGCTATGGCGGCATGTGA
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| Protein seq | MGWAGLGSSSFLFWALFCSSFLLLVLSSSSGVYTSIHRIVQSKAKPARKQPANPSYREIRIKEEDERDSFELEIEMKPKPFKEEFTLEERAKESAAMIASYPDRIPVLFLLLCFDASSLLSIFTANSSCLLLPQHTEKHTHNTRLFPSPVTADCYGGM |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0000020 | OsIR64_12g0000020.02 | Chr12 | 22936 | 25900 | - | NAM | ||
| CDS seq | ATGAAGCCCAAGCCCTTCAAGGAGGAGTTCACCTTGGAGGAGAGGGCCAAGGAGTCGGCCGCCATGATCGCCTCCTACCCCGACAGGATCCCTGTCATTGTTGAGAAATTTTCGAGTAGTAATCTTCCAGAAATGGAGAAGCGCAAGCTACATTTGTCTCCAGGGACAGCGTTGTTTGTGTTTGTCAACAACACTTTGCCCCAGACTGCTCAGCTGATGGGCAGTGTGTATGAGTCATACAAAGATGAGGGCGATGGCTTCCTCTACTTGTGCTACAGCAGCGAGAAGACATTCGGTTGA
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| Protein seq | MKPKPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSSSNLPEMEKRKLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0000020 | OsIR64_12g0000020.03 | Chr12 | 22907 | 25935 | - | IsoSeq | ||
| CDS seq | ATGCCACTAAGATACGTATTTTTGCATGCATTAGAAAAAAATACCCTCATCTTCTACTTCTCTCTTCCCTTGTCCTCTCCTCTTTCTCTGCTCATGCTCCTCTTAGACCCAAATCCCGTTGTTGATGCTTCCCTGTTGCTCTATGATTGGGTCGACCCATCTGCGTTCGCCGCCGGAGCTCGTGACGCTGGACAACACCGTGCAGGTCCACCGGTGCTCTTCACGAAGGCCGTCCTTGCTGCGTCGGGCGTCGAGGTGGTCATCGGTGATGAGGTGGAGGAGGCAGTTGCTGGACTGGAGGAGGCGATGATGGCGCATCGGGCAGCTGCGAGCGTGGTGAGGGAGGTGCAGGAGCTCGCCGGAGAGGAGAAGTGGCCACTCTTCGCTGCTCTTTCCTTGGTCCTTTGCTGCTTTGGCATTGTCGTCGCCACCGCCCAGGGCTCCTCGCTGCGAGGAGAGGCGGACGGATCTAGGACACCATCGTCACCATCTCCATCAAGCGTCGGCCTCCATCTTCCCCATTTCCACCTTGCCAGCCGCAGGGAGGGACTAGGGGAGGGAGGAGCTGCATTGTCG
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| Protein seq | MPLRYVFLHALEKNTLIFYFSLPLSSPLSLLMLLLDPNPVVDASLLLYDWVDPSAFAAGARDAGQHRAGPPVLFTKAVLAASGVEVVIGDEVEEAVAGLEEAMMAHRAAASVVREVQELAGEEKWPLFAALSLVLCCFGIVVATAQGSSLRGEADGSRTPSSPSPSSVGLHLPHFHLASRREGLGEGGAALS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 23303 | 23431 | - | OsIR64_12g0000020.03 | OsIR64_12g0000020.03,OsIR64_12g0000020.02 | All |
| A5 | Chr12 | 23483 | 25614 | - | OsIR64_12g0000020.03 | OsIR64_12g0000020.03,OsIR64_12g0000020.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.267535 | 0.704580 | 0.193611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000050 | RBH | 0.069433 | 0.724158 | 0.245408 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0075600 | SBH | 0.0052485 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
