Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0014310 | OGI:11049820 | 1/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:18833203-18835254 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCAACCGCGTCCTCCATCTCCGCTCTTGTCGCCGCCGGCCGTCTCTTCGCCGCCCTCGACGCCCTCCCCCCGTCATACTCCTCCTCCCAGGTCCCTTCCGCGGTCTACGCCTCCCTCCTCCGCCTAGCCACCTCCCACCGGTCACTCGCCGCCGCCCGCCGCATTGCCACCCACCTTGCATCCTCCACTGCACCCTCCACCTCCCATTCCTTTACCGCCACCTCCACCTTCCTCTTCAACCGCGCCGTCGAGTCGCTCGCCGCTTGCGGCAGCCTCACCGACGCGCGGAAGCTGTTCGACGCAATGCCGCGCCGGGATGGTGGTTCTTGGAACGCCATCATCTCGGCTTACTCCCGTGGGGAGGAACCCACTGAAGCGATTTCCCTTTTCTCTGCCATGAACTCCTGTGGCGTTCGCCCCAAGGACGTCACTCTGGCATCGGTGCTCGGGTGTTGCGCCGAGTGCCTGGACCTCCATGGTGCCCGGCAGCTCCATGGCCATATCGCCAAGAGGGACTTTCAGTCAAATGTGATTCTTGGCACGGCACTGGTTGACGTGTATGGGAAGTGCTTTGCCCTTTCAGAGGCAAGGAGGGCATTTGATGGCATCCCAAAACCCAATGACATCTCGTGGAATGTCATTATTCGGCGCTATCTTCTTGCTGGGATGGGGGATATGGCAATTGACATGTTCTTTCGGATGGTCTGGGCAGGAGTTAGTCCACTTGTTTATACTGTCTCACAAGCACTTCTTGCTTGCCGAGATAATGGTGCGCTTGAAGAGGGAAGGCGCATACATACTTTTGTGCTCCGACATGGGTATGAGCAGCACGTGCATGTGAGGAGCTCTGTTGTGGATATGTATGCGAAGTGTGGTGCCATTGATTTAGCCCAGAGGCTCTTCGACTTGGCACCAGTGAAGGATATCGTAATGTCTACTTCAATTGTGTCAGGATTGGCTTCCTGCGGGAGGATACTGATGCAAAGCGGGTGTTTGAAGGATGGAAGAACACAATTTAGTGTCCTGGAACGCTATGTTAACTGGTTATGTCAGATCCATGGATCTGACTAGTGCCTTGCAATTGTTCCAGCAGATGAGGCAGGAGACGAAGGAGCTTGATGCTGTTACTCTCGGCTGTGTGCTCAATGCTTGTACTGGGCTTCTTGATCTTGGGAAAGGTTGAGGAGTCCACACTTTCGCTTCAGAGTGGTTTTATTGGTTATCCTTCCTGAAGAATGCTCTCTTGAGGATGTATTCCAAATGTGGATGCTTAAGGAGTGCCGAACGGCTTCTTCTATTTGAGATGGGATCAGAAAGAGACAGTTACTTCCTGGAACTTCGCTTATCTCAGGTTATGAACGCCACTCCATGAGTGAAGCAGCTCTGCTTGCACTCAGTGAGATGCATTATGAGGCGACACCTAACCAATCGACGTTCAGCTCAGCACTGGCAGCCTGTGCCAACATATTTCTCCTTAATCACGGGAAGCAGATTCATGCATACATGATCAGGAACGGTTATGTGATTGATGATATACTGCAAAGTGCACTTATTGACATGTACGTCCAGTGTAGATTGTTTGATTACTCCATGAGGATCTTTGAGGCAGGACCATCTCAAGATGTCATCCTCGGGAATTCGATGATCTTTGGATGTGCTTATAATGGCAAAGGCGAGTATGGGCTTGAATTGTTCTTTGAAATGAGCAAGCAGGGGATTACACCAGACTCTGTCACTTTCCTCGGTGCACTGGTTTCATGTATAAGCGAAGGGCACGTCGGGTTGGGACGGAGTTATTTCACCCAGATGACTGATGAATATAACATCGTGCCTCGCATTGAGCACTATGAATGCATGATTGAGCTGTTGGGCAAGCATGGCTACATGGTTGAGCTTGAGGATTTTATAGGTCACATGCCATTCGAGCCAACAACTGCGATGTGGTTAAGGATCTTTGACTGCTGCAGGGAATACGGACAGAAAGTTAGGGGAGAGGGCTGCCCAGTGCATCAATGA
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| CDS seq | ATGGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCAACCGCGTCCTCCATCTCCGCTCTTGTCGCCGCCGGCCGTCTCTTCGCCGCCCTCGACGCCCTCCCCCCGTCATACTCCTCCTCCCAGGTCCCTTCCGCGGTCTACGCCTCCCTCCTCCGCCTAGCCACCTCCCACCGGTCACTCGCCGCCGCCCGCCGCATTGCCACCCACCTTGCATCCTCCACTGCACCCTCCACCTCCCATTCCTTTACCGCCACCTCCACCTTCCTCTTCAACCGCGCCGTCGAGTCGCTCGCCGCTTGCGGCAGCCTCACCGACGCGCGGAAGCTGTTCGACGCAATGCCGCGCCGGGATGGTGGTTCTTGGAACGCCATCATCTCGGCTTACTCCCGTGGGGAGGAACCCACTGAAGCGATTTCCCTTTTCTCTGCCATGAACTCCTGTGGCGTTCGCCCCAAGGACGTCACTCTGGCATCGGTGCTCGGGTGTTGCGCCGAGTGCCTGGACCTCCATGGTGCCCGGCAGCTCCATGGCCATATCGCCAAGAGGGACTTTCAGTCAAATGTGATTCTTGGCACGGCACTGGTTGACGTGTATGGGAAGTGCTTTGCCCTTTCAGAGGCAAGGAGGGCATTTGATGGCATCCCAAAACCCAATGACATCTCGTGGAATGTCATTATTCGGCGCTATCTTCTTGCTGGGATGGGGGATATGGCAATTGACATGTTCTTTCGGATGGTCTGGGCAGGAGTTAGTCCACTTGTTTATACTGTCTCACAAGCACTTCTTGCTTGCCGAGATAATGGTGCGCTTGAAGAGGGAAGGCGCATACATACTTTTGTGCTCCGACATGGGTATGAGCAGCACGTGCATGTGAGGAGCTCTGTTGTGGATATGTATGCGAAGTGTGGTGCCATTGATTTAGCCCAGAGGCTCTTCGACTTGGCACCAGTGAAGGATATCGTAATGTCTACTTCAATTGTGTCAGGATTGGCTTCCTGCGGGAGGATACTGATGCAAAGCGGATCCATGGATCTGACTAGTGCCTTGCAATTGTTCCAGCAGATGAGGCAGGAGACGAAGGAGCTTGATGCTGTTACTCTCGGCTGTGTGCTCAATGCTTGTACTGGGCTTCTTGATCTTGGGAAAGGTTATGAACGCCACTCCATGAGTGAAGCAGCTCTGCTTGCACTCAGTGAGATGCATTATGAGGCGACACCTAACCAATCGACGTTCAGCTCAGCACTGGCAGCCTGTGCCAACATATTTCTCCTTAATCACGGGAAGCAGATTCATGCATACATGATCAGGAACGGTTATGTGATTGATGATATACTGCAAAGTGCACTTATTGACATGTACGTCCAGTGTAGATTGTTTGATTACTCCATGAGGATCTTTGAGGCAGGACCATCTCAAGATGTCATCCTCGGGAATTCGATGATCTTTGGATGTGCTTATAATGGCAAAGGCGAGTATGGGCTTGAATTGTTCTTTGAAATGAGCAAGCAGGGGATTACACCAGACTCTGTCACTTTCCTCGGTGCACTGGTTTCATGTATAAGCGAAGGGCACGTCGGGTTGGGACGGAGTTATTTCACCCAGATGACTGATGAATATAACATCGTGCCTCGCATTGAGCACTATGAATGCATGATTGAGCTGTTGGGCAAGCATGGCTACATGGTTGAGCTTGAGGATTTTATAGGTCACATGCCATTCGAGCCAACAACTGCGATGTGGTTAAGGATCTTTGACTGCTGCAGGGAATACGGACAGAAAGTTAGGGGAGAGGGCTGCCCAGTGCATCAATGA
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| Protein seq | MAAAAAAAAAAASTASSISALVAAGRLFAALDALPPSYSSSQVPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLFNRAVESLAACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRILMQSGSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLGKGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYVQCRLFDYSMRIFEAGPSQDVILGNSMIFGCAYNGKGEYGLELFFEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGKHGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGQKVRGEGCPVHQ |
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| Function | Pentatricopeptide repeat-containing protein At3g26540 [UniProtKB/Swiss-Prot:Q9LRV2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0014310 | OsIR64_11g0014310.01 | Chr11 | 18833203 | 18835254 | + | NAM | ||
| CDS seq | ATGGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCAACCGCGTCCTCCATCTCCGCTCTTGTCGCCGCCGGCCGTCTCTTCGCCGCCCTCGACGCCCTCCCCCCGTCATACTCCTCCTCCCAGGTCCCTTCCGCGGTCTACGCCTCCCTCCTCCGCCTAGCCACCTCCCACCGGTCACTCGCCGCCGCCCGCCGCATTGCCACCCACCTTGCATCCTCCACTGCACCCTCCACCTCCCATTCCTTTACCGCCACCTCCACCTTCCTCTTCAACCGCGCCGTCGAGTCGCTCGCCGCTTGCGGCAGCCTCACCGACGCGCGGAAGCTGTTCGACGCAATGCCGCGCCGGGATGGTGGTTCTTGGAACGCCATCATCTCGGCTTACTCCCGTGGGGAGGAACCCACTGAAGCGATTTCCCTTTTCTCTGCCATGAACTCCTGTGGCGTTCGCCCCAAGGACGTCACTCTGGCATCGGTGCTCGGGTGTTGCGCCGAGTGCCTGGACCTCCATGGTGCCCGGCAGCTCCATGGCCATATCGCCAAGAGGGACTTTCAGTCAAATGTGATTCTTGGCACGGCACTGGTTGACGTGTATGGGAAGTGCTTTGCCCTTTCAGAGGCAAGGAGGGCATTTGATGGCATCCCAAAACCCAATGACATCTCGTGGAATGTCATTATTCGGCGCTATCTTCTTGCTGGGATGGGGGATATGGCAATTGACATGTTCTTTCGGATGGTCTGGGCAGGAGTTAGTCCACTTGTTTATACTGTCTCACAAGCACTTCTTGCTTGCCGAGATAATGGTGCGCTTGAAGAGGGAAGGCGCATACATACTTTTGTGCTCCGACATGGGTATGAGCAGCACGTGCATGTGAGGAGCTCTGTTGTGGATATGTATGCGAAGTGTGGTGCCATTGATTTAGCCCAGAGGCTCTTCGACTTGGCACCAGTGAAGGATATCGTAATGTCTACTTCAATTGTGTCAGGATTGGCTTCCTGCGGGAGGATACTGATGCAAAGCGGATCCATGGATCTGACTAGTGCCTTGCAATTGTTCCAGCAGATGAGGCAGGAGACGAAGGAGCTTGATGCTGTTACTCTCGGCTGTGTGCTCAATGCTTGTACTGGGCTTCTTGATCTTGGGAAAGGTTATGAACGCCACTCCATGAGTGAAGCAGCTCTGCTTGCACTCAGTGAGATGCATTATGAGGCGACACCTAACCAATCGACGTTCAGCTCAGCACTGGCAGCCTGTGCCAACATATTTCTCCTTAATCACGGGAAGCAGATTCATGCATACATGATCAGGAACGGTTATGTGATTGATGATATACTGCAAAGTGCACTTATTGACATGTACGTCCAGTGTAGATTGTTTGATTACTCCATGAGGATCTTTGAGGCAGGACCATCTCAAGATGTCATCCTCGGGAATTCGATGATCTTTGGATGTGCTTATAATGGCAAAGGCGAGTATGGGCTTGAATTGTTCTTTGAAATGAGCAAGCAGGGGATTACACCAGACTCTGTCACTTTCCTCGGTGCACTGGTTTCATGTATAAGCGAAGGGCACGTCGGGTTGGGACGGAGTTATTTCACCCAGATGACTGATGAATATAACATCGTGCCTCGCATTGAGCACTATGAATGCATGATTGAGCTGTTGGGCAAGCATGGCTACATGGTTGAGCTTGAGGATTTTATAGGTCACATGCCATTCGAGCCAACAACTGCGATGTGGTTAAGGATCTTTGACTGCTGCAGGGAATACGGACAGAAAGTTAGGGGAGAGGGCTGCCCAGTGCATCAATGA
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| Protein seq | MAAAAAAAAAAASTASSISALVAAGRLFAALDALPPSYSSSQVPSAVYASLLRLATSHRSLAAARRIATHLASSTAPSTSHSFTATSTFLFNRAVESLAACGSLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRILMQSGSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLGKGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYVQCRLFDYSMRIFEAGPSQDVILGNSMIFGCAYNGKGEYGLELFFEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGKHGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGQKVRGEGCPVHQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0587100 | SBH | 0.116927 | 0.000000 | 1.263000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37660 | SBH | 0.105163 | 0.000000 | 0.250387 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0587100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014030 | SBH | 0.127867 | 2.381245 | 0.825146 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014880 | SBH | 0.029065 | 0.486611 | 0.862829 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014620 | SBH | 0.763698 | 0.0 | 2.834969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014210 | SBH | 0.064713 | 0.080113 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014090 | SBH | 1.345534 | 0.0 | 1.481400 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0339800 | SBH | 1.338113 | 2.066991 | 0.390436 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013450 | RBH | 0.328232 | 0.072776 | 0.331069 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0336500 | SBH | 1.3679395 | 3.022888 | 7.0096395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013990 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023950 | SBH | 0.062940 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018580 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014360 | SBH | 0.209081 | 0.0 | 0.404660 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014560 | SBH | 0.106961 | 0.629162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013620 | SBH | 0.210396 | 1.111950 | 0.351265 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013640 | SBH | 0.392702 | 0.0 | 0.627357 |
