Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_11g0011100 OGI:11032240 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr11:11243587-11250191
Gene Symbol RecA
DNA seq

AAAATGGTGAAAAGTTATTTACATTTTATCCTTACTTGGTTATTGTCGCACAGCTTAGCTAGAAACCTTGCAAGTTAAGAAGAGATGAAACGTGGCATATGTACACTAGTCTTGCAGGAAAAAGAAAAAGAAAAAGAAAAAGGATACTGCTATATTGCTTCAGGCCTCAACCTCTTCAGGTACTTGTTCATCTGTTGCTGAAACGAACTCTTCTGTTATGCTCGTATCTGGGTTGGCATCCTCCATGTTTCTATCTGGATGGGACTCCTGTTGCATTATGCTTTCCTTTATCATTGACATCAGAGATTCCAGGACATTCTTGTTTTCAGCGAGATAACATTTAAGAGCATCCTTTCCATGGAAATTTTGCCCGTTCAAGTGATAGAATACTCCTGATTTTGTTATGAACTTGTGTTTGAAGCCTAATTCAATAATCTCCAATTCACGACTCAGGCCCTTACCAAACTCAAGCTCAAGGTGTACAGTCTTAAATGGGGGTGCATGCTTGTTCTTGACAATCTTGACCTGAATTTGTGTGCCTACAACCTGTTGGATTGAAACTGGATCGGGGTTATATAATGAAACAAGAACTGAACATGAAACATCTACGAAATTACAAAACCTATTATTACTAAATTCAATATTTATTTTTGTGTTACCTTTTTGGCAAAATGGGACACTACATAGAAAGCAAATATTATTGATACGATTGTGTTACCTCTTCTGACTTTTTTATAAGACCAATCCTTTTGGTGTTCAAGCGGACAGAAGCATAGAACTTTAAGGCATTCCCTCCACAGGTTACTTCTGCTGGTGCTCCAAATCCACTAAATGTGCTTAATTTCGATCTTACCTGTACACATACCCAGAAATGATCACTCTGTTACCTCTAAATAAACATCAAAAGTTCTTTTGAACTAAGTGATTAGGCTTGGTTAGAATTACAATACTGGACATAATACTAACCCATAATACACCCTGCAAACGCACCCAAAAAAACGTCATATTGTACAAGGAAACAACTCCACTAAACTATTTCCTGTCTTAGTTTGCATACATGGTTGGAGGATAGTTTGAGTTCCGTGTCTTTGTTCTTCATTATAGAGTTAATATATCCTCTCTTACTATAAAGTTATAGCTCACTAATTCCTAAAGCTTAACATGCAAAGATGTCACATCATCATCCACTAATAATTGTTACATTTAAACATCATGGAAGCATGCTATATTATCTATAATTCAATAATCTATTAAATTTTAGAGATTTAAAATGTAAGCAGGTTAAATCATCATCCCACATAATTCACATAATAGTTAAATATATCTCTCCATCATTTCTTTTATAATATCCTATATACCTATATAATTCATCCTCACTTAGTTCATATTATTTTTCTCTCTCATTAAGTCATATCACATCAATTGTTTTTAATCCTTAGATGCTTAATCTATGGTTCAAATTATCTCTCTTTTCTTCTCTCATTAAACCATATCATCTTACTCCCTCCGTTTCACAATATAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTTAGATTCATTACCATTAATATGAATGTGCGAAATGCTATAATGACTTACATTGTGAAACGGAGGAAGTAATTTTTTTAACCCTTAGATGTATGGTCTAAATTATCTTCCTTCTTTTGATCTCTCATAAAGCCACATCATTTTACTTTTACATTTGAATCATCATTCTAAATACAATTTAAATTTAAATCACAACAACTTATGTAAACTTATGTTTATGTAAGCTTATGTTGATTAAACTATCTTACACATTATTTTTCTTTGTTGTTATCATTGCAAACTCCTGCAGTAACGTGCGGGGTTTCACCTAGTACTACATAATTTCGTGACAACCGTCAACCTGAAAAATGTCCGAAGCCCACGTTTGACTATGGGAAATTTTTTTATATAAAAAAGCAAAACTCTGGTTTTTTTATAATATAATAGGGTGGTGTTTTAGGAGTGCTGGAACTAGAGTTATCAAGGCTGACCCAGCCATCAACTTTCTGGAGGTCTAGGTCACATGTCCAACAGCTGGGTATTTATTTAAATATTGAAATAAATTAATGGGAGGAAGTGACTATTTATACTTTGCGTAAGGACTTAAAATTTCACTACAAATATTGTTGGATGGCCAGCATTACCCAATGAATTATACAAAAGGCAAACCTGATTAATAAACACCAACATTGTCCTGGAGCGAGAAAGAGAATGGCTCAACTTGCGAAGTGCTTGACTCATAAGCCTTGCTTGAAGTGCAACATGGGCATCTCCCATCTCACCATCCAGTTCAGTTTTTGGAACAAGAGCTGCTACCTGTACATATAAAGATATAAATATGCTGCATGTGTCAATACTCAATACTTAGTAGTAACCAAAATGTAACAATAATACTTCCTTTTCCTCAAAAAAAAAAACAGTAATACTTCCTCCGATTCATATTATAAGTCGTTTTGACTTTTTACCTAGTCAAACTTTGTTAAGCTTGACTAAGTTTATAGAAAAATTTAGCAACATCCAAAACACTAAATTAGTTTTATTAAATCTAACATTGAATATATTTTGATGTTATGTTTGTTTTGTGTTGAAAATGCTTCTATGTTTTTCTATAAACTTGATCAAAGTTAAAAAAGTTTGATTAGGAAAAAAGTCAAAACGACATATAATATGAAACGGAGGGAGTAGCTGCTATGTAAGTTAGTTACATTATGCAGTGTGCAGGACCAAAAAGAGTACATTCTAGAGTGTAGATTAACAATGACTATGCTAAAAAGGGAGCACTAAATCTTTAAAATCAGGCTCAGGGAGCAATTCATATAAAGCATTCATTTTAAAATAGAATTCTCACATATATGATAAAATATTATCGATATCTTTTCAGAAGTTCAGAGCCAGGAGGCAGAAAGGCAAAAGCAAAGCGTGAATATAGCATAAGGTACTAACTTTCTACGTACACTGTCCACAACCACAACATCAATAGAGCCACTTCGGATTAAGATATCAGCAAGACCAAGGGCCTGTTCACCACAGTCTGGTTGAGATAATAACAGGTGTTCTGCCTTAACACCTATAGATTCTGCTAATGTTGGATCCAGGGCATGCTCGGCATCAATAAAAGCACAATATCCTGAAACAACAAAATCAATTTTTTTAAAAAAGGATTTATTTTACTAACAGGTTGCATAGATATTGAAATCTGAAGGAGCATGCTTTCACGGGAAAACTGGTCTACACCACTGAATAGTATGATATTTTGTTCTAGCAGCGAGAGATTGTACTCCTAACTTTCTTACCATTTACTTCTGAAACTAAAGCCTATTTGTGGACAACAAAGTGGAAATACCAATTGTATGTTAATTGTTCAAAGTAAAGTACCTATATTTGCATGCTGAAATAACCAGTCCACACTTTCTTTCACTTTTCACAGCTCATTGTCAAGGCCACTGGCCAGGACAGACTTGAAATGGTTGACTGACTCAGATAAATCAAATCAAAGAATTTCTCAGCCACTGTACAAATTTACAGGTAAGTTAATTTATTAAGATATTGCATTACTAATGCAGTCTTAGACTTTTTTTCCCTTCACAGCTCAACCTGAACCCATCAAAATTAGATTATTAATGCTGTCCATCGTTTTGCTTATAGTTTTCAAGTACATGGTGTTAGGCATAGAGGTTAGCACTGAAAACTTGATCATTGGCATAAAGTACTTATTTTACTAGCTTCATCTAAATAAAGAACAAAATCATGCTTTAAGAACTCAAAACTACTATATTGGCATCTTAATTCACTTTTTGCATTGTTAGTCATGGAAACTAGTTCACAGAGGAGATCAGATGTATACCCCAAACAATTATTTACCTCCATTCTTCTGTGCTTCAGCTATGATATGAAGTGCTAAAGTGGTTTTTCCTGATGCCTCTGGACCATAAATTTCAACAACCCTTCCCTACTGATAAATGCAAAAGTCAATGAAGTGCAAAAGAACAAATAGCAGAAGATAATTATGAAGAATAATATCATATAATTTGCTAAATGGAAATTCACTTAGAATTTTATCAGTTAACCAACGATGTAGAATGATATAACCAAAATGTACATATGCTTTTAACTAATCTTCTGTTTATGCATTATTTAACAAACATCTCTTAACATAAGTGAGTTTCAGATTTCCAGGAAATTACTAAATCATACCAACAAACCCTACAGCAGTTTTATTTCTCAAACATGCAGGAGAGCTGCGTATCATTGATTAAGAAAAAGAAAGGGTAGAAAACCCTGAGTACACACACGTTCGCCTATACCCTACAGAAGCAGTTATAATGGAGCAATAGAGCTATCAGAAAAAAAAAAGGGGCAACTCTATCTGACATGCTGGCTATGGCGATAAACAGGTCAGTAATGTTTAAAAGATTAAATTGCATTGGAACTTCCTAAATGTTAATTGACCTAGCAGTTTTATTTTGCTTGCTAGCCTCCCTAAACTTGCATCCATTTGCTGTTAGGCTCGGATTATTCTGTTAGCAAACGGGGAATAGATGACCAGTGATGCAAATGGGTTTAAGTTCAAAGAGCCTAGAAAACAAAAGTCAGCTCAGGGAGCTAGGTGAGACAAGTCTACAAATTCAGGGAGCTCTGATTCAATTTACTCTTTTTAATAGAAAATAAGTTTCATTAAACTTTCAATAGTAGAAAGTCATTTACTCGTCCTAAATAGAGCATGCATCAGTGATCCTGGATACTAGAATATAACAATTATTAAACAAAAGAATTAATACCCTTAACTCACCTTCGGGAGCCCACCAATTCCTAAAGCCATGTCCAATGCAAAGGATCCAGTAGATATGACAGGAACTTCTTTAGGACCGTAAGAGTGATTTAGCCACATAATTGACTCCTCACCAAATGCAGACTTAATTTGGTCCAAAGCTTGTTGTAGCGCAAAGTCCTTCTTCTTAATGTTTGCCTCACTGTAACCATCTTCACTTGAATTTGTCTGGTCTTTCCCTAAAAAATAAACCATATATAGAGTCAGTGGTAAATCTGGATATATATACAATGAACAAATTCACCAATAAACTTGACAAATGAGATCGGTATTGTTATTTTGGAATAGAATTTTCAAGTTATCTGGAATCTGGAAACAAACTCAAGATGCAATCATGTAAAATTTTCCAGAATAGGGGAACCACTAACAACGATTCGTGTTGTACATAAAAAACAAAGGTTAGCACATGAATACTTATTGAATTGGAAAAATATTTGCCTATAATGATAATTAGCTAAAACTGTATAACACTTCCATTATGATAACTGATAAGTATAAAACAAATATTTCTTTCCCATGCATGCTGTACACATGCCAGCTAGATTCCCATGAAGATTTTCCAACGAAATTAACAGGATATAACCATACGACAAATCCAGAAACAAAAAAGTAAATCTGTCGTAAGAAAGAAGTACCATGGAAAACATAAGTATTACAAGAGGAAAAATTTCCAGCAAGGAGGTATCATCAACCTAGCACAATGTCACTGCATTAGAGTGAAAGAACTAGGCATTTACGCACCTTCTGCAGAGAATCTCCACAACTGAACTCTTGGTGACACATTTCTATTGCAGGATTCCTTCAAAAACAAAACAGAAGGCAATAATTATGGCCTGAATGTTGATTTTTGTGTTGAGTCATAAAAAATTCTTTCACCGTTCTACTAGGAGAAAACAAGCAGGGCTAGATTAAGTTGTCCGCTGTTATAGCCAATCCATGCAGATAAAAAACAGGTAATTAATCGTGCTGCCTTAATCAACATGGTAAATGGTACACAACTCCAAGGGCTTGCAGTTCTAGGGGATAACGACAATCAAAACCTTAAAAGACCTCAAGTAGTGGGCACTGCATGCTCATCGTCACCAGTATCCATCACATCAGGTTCAGAAACTTGTTATACCCATATATTTACCACTGCATCATCAGCTTTCAACTCAAAGGGATTTCCCCCTTTTGTAAACCCACTAACCCAGCAACAATGAAAATCCACAAAATCTAAGAAGGATACAACGAAATCAACAAAAAAAAAGAAAGAAAAAGAAAAGGAATCGATTGGCTTCGGATGGCTCGAGGCACGCGAGATAACTTCCGGACCACGCGGCCATGGCCCCCAACGACGAGCCTATAATGGCCGCGCATGCACGCCCGACATGGGGGCGCCCAGCTGTCCGTCCTGCAGTTGTGAGAGCGCTATCCCCGCGGCTCGACGCCTTTGATCGGGGGCTGCAAAAAAAGGAAGGGGAAGAGGGGGAGGGGGCGACTCGAGAGGGTTGGAGACGACGAACCAGTACAGAGGAGGTGGGAGGCGGGGGAGGCCGCAGGAGGCGGCGGAGGAAGGGGTGGCCGCGCCGGAGGAGGAGGGCCCTGGCCATGGCCGCCGGAGGAGGCTCTCCGGTTGCTTCTTCTTGCGCTTCCTGAGTTGGGCCGATGATCGTGGGGCCCGCGCGCCGGCGAAATTTCGCCTTGGGTGGGTGCGCAGCGGGGGTGTGTCGTGTG

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CDS seq

ATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGA

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Protein seq

MARALLLRRGHPFLRRLLRPPPPPTSSVLESCNRNVSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIELGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESLMSMIKESIMQQESHPDRNMEDANPDTSITEEFVSATDEQVPEEVEA

Function DNA repair protein recA homolog 3, mitochondrial [UniProtKB/Swiss-Prot:Q9ZUP2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_11g0011100 OsIR64_11g0011100.01 Chr11 11243587 11250191 - NAM
CDS seq

ATGGCCAGGGCCCTCCTCCTCCGGCGCGGCCACCCCTTCCTCCGCCGCCTCCTGCGGCCTCCCCCGCCTCCCACCTCCTCTGTACTGGAATCCTGCAATAGAAATGTGTCACCAAGAGTTCAGTTGTGGAGATTCTCTGCAGAAGGGAAAGACCAGACAAATTCAAGTGAAGATGGTTACAGTGAGGCAAACATTAAGAAGAAGGACTTTGCGCTACAACAAGCTTTGGACCAAATTAAGTCTGCATTTGGTGAGGAGTCAATTATGTGGCTAAATCACTCTTACGGTCCTAAAGAAGTTCCTGTCATATCTACTGGATCCTTTGCATTGGACATGGCTTTAGGAATTGGTGGGCTCCCGAAGGGAAGGGTTGTTGAAATTTATGGTCCAGAGGCATCAGGAAAAACCACTTTAGCACTTCATATCATAGCTGAAGCACAGAAGAATGGAGGATATTGTGCTTTTATTGATGCCGAGCATGCCCTGGATCCAACATTAGCAGAATCTATAGGTGTTAAGGCAGAACACCTGTTATTATCTCAACCAGACTGTGGTGAACAGGCCCTTGGTCTTGCTGATATCTTAATCCGAAGTGGCTCTATTGATGTTGTGGTTGTGGACAGTGTAGCAGCTCTTGTTCCAAAAACTGAACTGGATGGTGAGATGGGAGATGCCCATGTTGCACTTCAAGCAAGGCTTATGAGTCAAGCACTTCGCAAGTTGAGCCATTCTCTTTCTCGCTCCAGGACAATGTTGGTGTTTATTAATCAGGTAAGATCGAAATTAAGCACATTTAGTGGATTTGGAGCACCAGCAGAAGTAACCTGTGGAGGGAATGCCTTAAAGTTCTATGCTTCTGTCCGCTTGAACACCAAAAGGATTGGTCTTATAAAAAAGTCAGAAGAGGTTGTAGGCACACAAATTCAGGTCAAGATTGTCAAGAACAAGCATGCACCCCCATTTAAGACTGTACACCTTGAGCTTGAGTTTGGTAAGGGCCTGAGTCGTGAATTGGAGATTATTGAATTAGGCTTCAAACACAAGTTCATAACAAAATCAGGAGTATTCTATCACTTGAACGGGCAAAATTTCCATGGAAAGGATGCTCTTAAATGTTATCTCGCTGAAAACAAGAATGTCCTGGAATCTCTGATGTCAATGATAAAGGAAAGCATAATGCAACAGGAGTCCCATCCAGATAGAAACATGGAGGATGCCAACCCAGATACGAGCATAACAGAAGAGTTCGTTTCAGCAACAGATGAACAAGTACCTGAAGAGGTTGAGGCCTGA

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Protein seq

MARALLLRRGHPFLRRLLRPPPPPTSSVLESCNRNVSPRVQLWRFSAEGKDQTNSSEDGYSEANIKKKDFALQQALDQIKSAFGEESIMWLNHSYGPKEVPVISTGSFALDMALGIGGLPKGRVVEIYGPEASGKTTLALHIIAEAQKNGGYCAFIDAEHALDPTLAESIGVKAEHLLLSQPDCGEQALGLADILIRSGSIDVVVVDSVAALVPKTELDGEMGDAHVALQARLMSQALRKLSHSLSRSRTMLVFINQVRSKLSTFSGFGAPAEVTCGGNALKFYASVRLNTKRIGLIKKSEEVVGTQIQVKIVKNKHAPPFKTVHLELEFGKGLSRELEIIELGFKHKFITKSGVFYHLNGQNFHGKDALKCYLAENKNVLESLMSMIKESIMQQESHPDRNMEDANPDTSITEEFVSATDEQVPEEVEA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.026868 0.305325 0.567968

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0302700 RBH 0.000000 0.000000 0.983599
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g19720 RBH 0.000000 0.000000 0.252920
Nipponbare | IRGSP 1.0 | RAP-db Os11g0302700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0011160 RBH 0.317510 6.242293 3.922762
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0011130 RBH 0.160250 0.000000 1.129847
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0011090 RBH 0.795740 5.893508 4.680696
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0010840 RBH 0.225788 0.070320 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0011210 RBH 3.740771 0.0 8.164628
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0170700 RBH 3.5732535 9.582237 13.320793
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0175500 RBH 3.892417 10.4306885 9.584893
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0011230 RBH 0.105132 0.076844 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0011390 RBH 0.519282 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0011030 RBH 1.489805 9.940361 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0010810 RBH 0.318932 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0011100 RBH 0.000000 0.697251 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G011150 RBH 0.276815 0.0 0.362686
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0011360 RBH 0.835907 5.498288 1.930425
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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