Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0006970 | OGI:11017220 | 6/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:5813435-5814686 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGAATGGAATGGCTGTTGATCTGCCTCCCCCTTGCGGATTTTTTTTTTTTTTGAAACTTAAACAACATATAAGCAACAGATCAAGGGGGCAAGCCCCCGTACATCGCCAACAGAGATGGCTTAAGAACCAACAAGATGCACAGAAGTGAAAACTGGACTAAGAGCACAAACAACCTCCTAAAACTAGGCATCGTAGAAGGCGCAAATCGACAGGGAGCTGCGGCAAAGCCGCGACGATTACAACCTTAGGTCTCCTTTGGCATGCAGACCGCTTGACGAACCGGTAATCCCCTTTGGACGCCTTCACAGAATCTGCACAAATTGGAGATTTGCTGTTGAGCCGTGGATTTTGGTGTAAGCTTCACCGGACCCAACCAAACTTCACCACGGAGTTCGCCATTGAATCTGAGGAGCGTGAGCTCAACCCGAATGGCCCACCCAGCGTGGATACTACTGCCCGGAGACGAAGAGGGAGAAAGACCCCAAATCCAGCCACCCTGAAGCAGTGAAGAGCATAACCATTGACGAATGAACTGTTCTCTAGAGGGGACGACGCACAACATTGGGGAAGAGAGGACTTGCAGAAGGTGGAGCAGAAGCACCAGCTGGGGACCCAAGGAGGGAGAAGGCCGGAGAAGAGCTTCGGCCAGCACGGTGATAGGAACGACAACATCGTCGACTCCGGCGACGACGCCATCATTCCGGACACCGGCAAGAAGCACAAAGCACCACCACCAACCCAGATCACAACCGGTGCAGAGGGAAAGAGACCACGAGCAAGACACCTTCTCGTAGGCCTTCAACAGCACCTCCATGCACAATAGCAAGGACCACGGCGGCGGCAAGAGCAGACACCACATCACCACCTCAAGCACCAGATCCAGCACATCCTCCTCCTCCACTAGCTGCAAAGAACCAACAACAACGACGACGAGACCACGCCGCTGCCAGCAGACAGCAACAGCTCGCCATCGACCAACGCCAACGCCAACGCCATCGACAACTCCGGCAACCATAGGACCTCGCCGGCAAAGAAGACAAGGGACAGACCCTAACTACAGGACAAACCTGACACAATACTACTAGGGGAAGGTGGCCGGACCCTTCCTCCAACCCTCGCCGGCAGCAAGCCGCCGGAATCGAAGGGGAAGAGGGGCCGGAAGGGAGGGATTTTGGGAAGCTACTGTAGAGAAGAAAGGGGAACGGGAGGAGGGGAAAGTCGCTTACCGCCCTGGTTTCCCCCCTTGCGGAT
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| CDS seq | ATGGCGTTGGCGTTGGCGTTGGTCGATGGCGAGCTGTTGCTGTCTGCTGGCAGCGGCGTGGTCTCGTCGTCGTTGTTGTTGCTAGTGGAGGAGGAGGATGTGCTGGATCTGGTGCTTGAGGTGGTGATGTGGTGTCTGCTCTTGCCGCCGCCGTGGTCCTTGCTATTGTGCATGGAGGTGCTGTTGAAGGCCTACGAGAAGGTGTCTTGCTCGTGGTCTCTTTCCCTCTGCACCGGTTGTGATCTGGGTTGGTGGTGGTGCTTTGTGCTTCTTGCCGGTGTCCGGAATGATGGCGTCGTCGCCGGAGTCGACGATGTTGTCGTTCCTATCACCGTGCTGGCCGAAGCTCTTCTCCGGCCTTCTCCCTCCTTGGGTCCCCAGCTGGTGCTTCTGCTCCACCTTCTGCAAGTCCTCTCTTCCCCAATGTTGTGCGTCGTCCCCTCTAGAGAACAGTTCATTCGTCAATGGGTGGCTGGATTTGGGGTCTTTCTCCCTCTTCGTCTCCGGGCAGTAGTATCCACGCTGGGTGGGCCATTCGGGTTGAGCTCACGCTCCTCAGATTCAATGGCGAACTCCGTGGTGAAGTTTGGTTGGGTCCGCTTACACCAAAATCCACGGCTCAACAGCAAATCTCCAATTTGTGCAGATTCTGTGAAGGCGTCCAAAGGGGATTACCGGTTCGTCAAGCGGTCTGCATGCCAAAGGAGACCTAAGGTTGTAATCGTCGCGGCTTTGCCGCAGCTCCCTGTCGATTTGCGCCTTCTACGATGCCTATTTTCACTTCTGTGCATCTTGTTGGTTCTTAAGCCATCTCTGTTGGCGATGTACGGGGGCTTGCCCCCTTGA
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| Protein seq | MALALALVDGELLLSAGSGVVSSSLLLLVEEEDVLDLVLEVVMWCLLLPPPWSLLLCMEVLLKAYEKVSCSWSLSLCTGCDLGWWWCFVLLAGVRNDGVVAGVDDVVVPITVLAEALLRPSPSLGPQLVLLLHLLQVLSSPMLCVVPSREQFIRQWVAGFGVFLPLRLRAVVSTLGGPFGLSSRSSDSMANSVVKFGWVRLHQNPRLNSKSPICADSVKASKGDYRFVKRSACQRRPKVVIVAALPQLPVDLRLLRCLFSLLCILLVLKPSLLAMYGGLPP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0006970 | OsIR64_11g0006970.01 | Chr11 | 5813515 | 5814431 | - | NAM | ||
| CDS seq | ATGGCGTTGGCGTTGGCGTTGGTCGATGGCGAGCTGTTGCTGTCTGCTGGCAGCGGCGTGGTCTCGTCGTCGTTGTTGTTGCTAGTGGAGGAGGAGGATGTGCTGGATCTGGTGCTTGAGGTGGTGATGTGGTGTCTGCTCTTGCCGCCGCCGTGGTCCTTGCTATTGTGCATGGAGGTGCTGTTGAAGGCCTACGAGAAGGTGTCTTGCTCGTGGTCTCTTTCCCTCTGCACCGGTTGTGATCTGGGTTGGTGGTGGTGCTTTGTGCTTCTTGCCGGTGTCCGGAATGATGGCGTCGTCGCCGGAGTCGACGATGTTGTCGTTCCTATCACCGTGCTGGCCGAAGCTCTTCTCCGGCCTTCTCCCTCCTTGGGTCCCCAGCTGGTGCTTCTGCTCCACCTTCTGCAAGTCCTCTCTTCCCCAATGTTGTGCGTCGTCCCCTCTAGAGAACAGTTCATTCGTCAATGGGTGGCTGGATTTGGGGTCTTTCTCCCTCTTCGTCTCCGGGCAGTAGTATCCACGCTGGGTGGGCCATTCGGGTTGAGCTCACGCTCCTCAGATTCAATGGCGAACTCCGTGGTGAAGTTTGGTTGGGTCCGCTTACACCAAAATCCACGGCTCAACAGCAAATCTCCAATTTGTGCAGATTCTGTGAAGGCGTCCAAAGGGGATTACCGGTTCGTCAAGCGGTCTGCATGCCAAAGGAGACCTAAGGTTGTAATCGTCGCGGCTTTGCCGCAGCTCCCTGTCGATTTGCGCCTTCTACGATGCCTATTTTCACTTCTGTGCATCTTGTTGGTTCTTAAGCCATCTCTGTTGGCGATGTACGGGGGCTTGCCCCCTTGA
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| Protein seq | MALALALVDGELLLSAGSGVVSSSLLLLVEEEDVLDLVLEVVMWCLLLPPPWSLLLCMEVLLKAYEKVSCSWSLSLCTGCDLGWWWCFVLLAGVRNDGVVAGVDDVVVPITVLAEALLRPSPSLGPQLVLLLHLLQVLSSPMLCVVPSREQFIRQWVAGFGVFLPLRLRAVVSTLGGPFGLSSRSSDSMANSVVKFGWVRLHQNPRLNSKSPICADSVKASKGDYRFVKRSACQRRPKVVIVAALPQLPVDLRLLRCLFSLLCILLVLKPSLLAMYGGLPP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0006970 | OsIR64_11g0006970.02 | Chr11 | 5813435 | 5814686 | - | IsoSeq | ||
| CDS seq | TCCGCAAGGGGGGAAACCAGGGCGGTAAGCGACTTTCCCCTCCTCCCGTTCCCCTTTCTTCTCTACAGTAGCTTCCCAAAATCCCTCCCTTCCGGCCCCTCTTCCCCTTCGATTCCGGCGGCTTGCTGCCGGCGAGGGTTGGAGGAAGGGTCCGGCCACCTTCCCCTAGTAGTATTGTGTCAGGTTTGTCCTGTAGTTAGGGTCTGTCCCTTGTCTTCTTTGCCGGCGAGGTCCTATGGTTGCCGGAGTTGTCGATGGCGTTGGCGTTGGCGTTGGTCGATGGCGAGCTGTTGCTGTCTGCTGGCAGCGGCGTGGTCTCGTCGTCGTTGTTGTTGGTTCTTTGCAGCTAGTGGAGGAGGAGGATGTGCTGGATCTGGT
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| Protein seq | SARGETRAVSDFPLLPFPFLLYSSFPKSLPSGPSSPSIPAACCRRGLEEGSGHLPLVVLCQVCPVVRVCPLSSLPARSYGCRSCRWRWRWRWSMASCCCLLAAAWSRRRCCWFFAASGGGGCAGSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.623627 | 1.169562 | 1.864748 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006980 | RBH | 16.978758 | 30.977039 | 13.911650 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092300 | RBH | 25.2725135 | 74.6224095 | 115.05497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006970 | RBH | 0.356150 | 0.745822 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006990 | RBH | 1.367517 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007090 | RBH | 1.963364 | 10.663354 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
