Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_10g0004840 | OGI:10019500 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr10:6427663-6431268 | ||||||||
| Gene Symbol | OsLSR, LSR | ||||||||||
| DNA seq | AACAAAATTGCAATTTATCCAAAATGGGGAAAGAATATAAGCTTTCTTGTAGCTGAAACTAGAGAGGCATGGCAATGAAGTTAGTTCAAGCATGGGGTCACTTACAAATTCAAGTATCAGAAGTTTGTTCCTCGTCAACTGAAATCATGACACGGCATCCCCTCCCCCTAGCTGGCTCATGATCATCAACAGAGAGCTGAGGCATGCAAATCAAGCGAAGCTCTACCAAATCATCCAGCTGGTGAAGTACATTTGAGATGCTCCTCAGCATGGTACACTTGAGAGTCAAAACAGCGAGAAATGCCATGGATCCCTGCTGCAAATTCCACTCCTCCAAACCAATATCCATAAGTACCAAACTGCGTAATGCAAGGAATCCCTCGGAAGAACATGTTATTCTCTTTCCTGTGTATGATGAGTTAACAATTTCAAGCACTTCAAGACGTGGAAGTCTCTCCAGAATTGGCATTGGATCATCATTTAGTATATTGGGACAAGATATCTTGAGCTGCAATAGAAAGTTTGGGAATAGATTATGATGTGGAAGCACATCATTCAGAACGTGACGCTCTTTAAAACATCCAGACAATTCTAAACCATCAACTTTGGATTCTAAGGCATCTACCCTTATATCTAAATTGTATTCTTCATGTTCTTGGGTCTCTTTTTCCTTCACGCGTTTAGTAGAGGCTATCCCTAAGCACCAGGAAACATGTTGGCTCATTTTTTGCAGAGACCTGATTGTTCTTTTCCACGTCAGAGCATCACACTGCATTATGGAAAATACATAAAGAGTCTGCAAGCTTCGTTTCGTTCTAATCTCCTGGGCTTTCCAATGCAGTACTTGGTAGACATGAACATGCTTTAGTGCTGCGATGCTCCAGAGGGAACTTGGAAGTGCCTTGACAGTAGCTGTACTTGCTTCAAGAATTTGCAAGTTTCTAAGACCTTTCATATAAGAAGGGAACATGAAAACAGTACTACCTTCCAAACCCAGGTATCTCAGATGTACCAATTTGTTTATTTCTTCAGGCAAGGTACATGTCTTTAAGGAACTGCAAAAATGAAGCACCCTCAACAAATGCAACCCATTGAAAGAAAACAGACGTTTGCCATCAGGGTTGAAGGCCAGCACAGAACGGAGATTCAGAACTGATTTTCCCACTTCATTATCAAAGTAACCATGAAATGCTACACGGTAACACCTCTGTTCATCTGCATAATAAGTCTCCACATCTGTGCCGCTTGAGCAAACTTTCAAGAAACCTTCCTTCCTGGCTTGTCCAATTCCCCACTCACGCAACACATCATGAACTTTTATTTTCTTTATCCACCCAATGTTTTTACTTCTTTCTTCAATTTGGATCATACATCTCTGTGCCAGCTCTTCTACATATCTGTAGGCAACTTCTTCTTGTGTATATCCTCTTATATTTGGGACAAATCCCTCAGCAATCCACATCTTTTTAAGAACATGAACTGTGATAGGGTAGTCCTCGGGAAAGGATGCAGTATAAAGGAAGCAAGCTTTAAGGTTATTTGACATATTGTGATAACTTAGAGCTAATATACGTCCAACATCGCCCTCCTTTTTCATGATTTCCCAGTCTACACTAGCAACCATTTTCTCCCATGTATGAATATTGTGGTTTCGTGAAAGGAAGCAACCTAAAACCACTAGAGCAAGTGGCAAGCCATTGCATTTCTTGGAGAGTTTTTTCCCCACCACCTCAAGTTCTGTGAATTGCACATCATGTGGAAATGCCTTCTTCTGGAAAAGTTCCCAGCTCTTGTCTTCGTCTAATAGGTCAGGGGTATGAATTTGCACTTTAGTTTTAGGATGTTGTCCAACTTCCATATCACGGGTAGTCAGAATTATTCTACTTCCATTTCCTTTGTCAGGAAATACTGATTTGATCTTGTCCCAGGTATCTGTTGTCCAGATGTCATCCAAAACAATAAGGTAGCGCTCTTCCTTCAGAAAATCAAAAATAAGTTTTGAAACCTCTGTCTCACCATAGAAATTTAAATGCATGCTCTTTCGCTCGCTTATCTTCCCAGTGCCCCTTATCTGTCGCACGAGATCTCTTAATACTTCAAGGGCAGAATATTTTGGAGAAATGGATACCCAACCATATTTGTGAAAATAACCTTCAGTTATGACTGAACTATAAGCTAGTTTTGCAAGTGTGGACTTCCCAGCCCCTGCCTGACCAACAATCGATATAACAGTTAGATTCATGTTATTTTGGTCAAGCAAGTAACTCTTAATTTGTGCAATTTCATGATCGAATCCAACTATATCCATTCCTTGATCCAAACCCGGCGGCACAAGCCTTTGTGCATAGAAATCCTCATCCTCCCTAAAAATGGGCTGTGCTTCCGTTGAAGTGCTAGAATTAACTGCGTTGTATCTGTTGTACCGCTCAAAAATCTCACTAATTTCCTTTCTTATAACTTGTATGTTTTTGCCAACCTCACGGAGGTCAATGGAATCACCAAAGATGTGAGTATATTTTGATACAGAAGTCTTTCTCCTCCTAAAAATGAAATGAGCATTGTCAATAACCTCTTCCACCCGGTATGCCACGTCTTGAATATTACTGGCCAGATTTTTCATCATGCTGTTTCCTTCCAAACATTTGGCATCCACAACATTTAAGAAGCATTGCATCTGGCTCAGTTCTGCTTTCATGGATGATACTTGTCGAGGAACATCACTTAAAAAGGTAGCTTCTTGGATGACAAGGTCACCAAGCCTCTGCAAAACTGAGGAAACTACTGATGCTGTCATGCTTAGTTAGCTGAATGAATCCACCATGAATTTAGATGGAGAAAGTTGCATAGCCAGTAAATATCATCCTGTTCTGTCCTTATTGTTTAATAGTACTTGATGAGATCCCCTTGTGTTATTGACATCCATTAATGAGAGGGCAATAGATATCTTCCCTAGGGCAAAGTCAAATAACAATCTCAGTTAAATCTATGGAGAGAATTTTAGAAAGAAGTTGCTGCTCTGCTCAATGGAGATAAATAACTTTCCAGCAGAATTTTTTTTTTCTTCGAATGTGGGCATGGAAAATCATGAAGGAGACAAACAGCGTGGCGAAGAGTGGTGGTACAAAGTAAGAGAAAAAGCTTACGGAATACAGATATGGTCAAGCAGAAAAGGAACACAGAAAATATCCCCTTCAGTATTATTGACGAAATTATACTATACACCCTTCATCAATAGTTGAATCTTGCTGGATTACTTCTTTTCTCGTTCAGACCAGGTCGTTAACAACCATTATTACCCTCTAGATTCAAGAAAAATTAGAGCATAATCCTACCAAGAAAATAGTTGCTGAAACTTAAACATCGAAACAGCACATCATTGGTAGAGTGAAGAAACTGAATCTTTAAAATAGAGAGCAGAAATTACCATATCCATGGTTGAGCGAGAGGGGATTGCGGCTGGGGGAAGAGACATTGGACCGATTTGGAGAGAGGAACTGAAAAGCCCCAAATTGACTTCGTTCTGGAGCTGGGCTACAGTCGTCGACTTTCAAGCATCAGTACAGGAAGGATAAAAAGTGCCGAACATGGAGACAGATAAGCAGTAGT
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| CDS seq | ATGTCTCTTCCCCCAGCCGCAATCCCCTCTCGCTCAACCATGGATATGAGGCTTGGTGACCTTGTCATCCAAGAAGCTACCTTTTTAAGTGATGTTCCTCGACAAGTATCATCCATGAAAGCAGAACTGAGCCAGATGCAATGCTTCTTAAATGTTGTGGATGCCAAATGTTTGGAAGGAAACAGCATGATGAAAAATCTGGCCAGTAATATTCAAGACGTGGCATACCGGGTGGAAGAGGTTATTGACAATGCTCATTTCATTTTTAGGAGGAGAAAGACTTCTGTATCAAAATATACTCACATCTTTGGTGATTCCATTGACCTCCGTGAGGTTGGCAAAAACATACAAGTTATAAGAAAGGAAATTAGTGAGATTTTTGAGCGGTACAACAGATACAACGCAGTTAATTCTAGCACTTCAACGGAAGCACAGCCCATTTTTAGGGAGGATGAGGATTTCTATGCACAAAGGCTTGTGCCGCCGGGTTTGGATCAAGGAATGGATATAGTTGGATTCGATCATGAAATTGCACAAATTAAGAGTTACTTGCTTGACCAAAATAACATGAATCTAACTGTTATATCGATTGTTGGTCAGGCAGGGGCTGGGAAGTCCACACTTGCAAAACTAGCTTATAGTTCAGTCATAACTGAAGGTTATTTTCACAAATATGGTTGGGTATCCATTTCTCCAAAATATTCTGCCCTTGAAGTATTAAGAGATCTCGTGCGACAGATAAGGGGCACTGGGAAGATAAGCGAGCGAAAGAGCATGCATTTAAATTTCTATGGTGAGACAGAGGTTTCAAAACTTATTTTTGATTTTCTGAAGGAAGAGCGCTACCTTATTGTTTTGGATGACATCTGGACAACAGATACCTGGGACAAGATCAAATCAGTATTTCCTGACAAAGGAAATGGAAGTAGAATAATTCTGACTACCCGTGATATGGAAGTTGGACAACATCCTAAAACTAAAGTGCAAATTCATACCCCTGACCTATTAGACGAAGACAAGAGCTGGGAACTTTTCCAGAAGAAGGCATTTCCACATGATGTGCAATTCACAGAACTTGAGGTGGTGGGGAAAAAACTCTCCAAGAAATGCAATGGCTTGCCACTTGCTCTAGTGGTTTTAGGTTGCTTCCTTTCACGAAACCACAATATTCATACATGGGAGAAAATGGTTGCTAGTGTAGACTGGGAAATCATGAAAAAGGAGGGCGATGTTGGACGTATATTAGCTCTAAGTTATCACAATATGTCAAATAACCTTAAAGCTTGCTTCCTTTATACTGCATCCTTTCCCGAGGACTACCCTATCACAGTTCATGTTCTTAAAAAGATGTGGATTGCTGAGGGATTTGTCCCAAATATAAGAGGATATACACAAGAAGAAGTTGCCTACAGATATGTAGAAGAGCTGGCACAGAGATGTATGATCCAAATTGAAGAAAGAAGTAAAAACATTGGGTGGATAAAGAAAATAAAAGTTCATGATGTGTTGCGTGAGTGGGGAATTGGACAAGCCAGGAAGGAAGGTTTCTTGAAAGTTTGCTCAAGCGGCACAGATGTGGAGACTTATTATGCAGATGAACAGAGGTGTTACCGTGTAGCATTTCATGGTTACTTTGATAATGAAGTGGGAAAATCAGTTCTGAATCTCCGTTCTGTGCTGGCCTTCAACCCTGATGGCAAACGTCTGTTTTCTTTCAATGGGTTGCATTTGTTGAGGGTGCTTCATTTTTGCAGTTCCTTAAAGACATGTACCTTGCCTGAAGAAATAAACAAATTGGTACATCTGAGATACCTGGGTTTGGAAGGTAGTACTGTTTTCATGTTCCCTTCTTATATGAAAGGTCTTAGAAACTTGCAAATTCTTGAAGCAAGTACAGCTACTGTCAAGGCACTTCCAAGTTCCCTCTGGAGCATCGCAGCACTAAAGCATGTTCATGTCTACCAAGTACTGCATTGGAAAGCCCAGGAGATTAGAACGAAACGAAGCTTGCAGACTCTTTATGTATTTTCCATAATGCAGTGTGATGCTCTGACGTGGAAAAGAACAATCAGGTCTCTGCAAAAAATGAGCCAACATGTTTCCTGGTGCTTAGGGATAGCCTCTACTAAACGCGTGAAGGAAAAAGAGACCCAAGAACATGAAGAATACAATTTAGATATAAGGGTAGATGCCTTAGAATCCAAAGTTGATGGTTTAGAATTGTCTGGATGTTTTAAAGAGCGTCACGTTCTGAATGATGTGCTTCCACATCATAATCTATTCCCAAACTTTCTATTGCAGCTCAAGATATCTTGTCCCAATATACTAAATGATGATCCAATGCCAATTCTGGAGAGACTTCCACGTCTTGAAGTGCTTGAAATTGTTAACTCATCATACACAGGAAAGAGAATAACATGTTCTTCCGAGGGATTCCTTGCATTACGCAGTTTGGTACTTATGGATATTGGTTTGGAGGAGTGGAATTTGCAGCAGGGATCCATGGCATTTCTCGCTGTTTTGACTCTCAAGTGTACCATGCTGAGGAGCATCTCAAATGTACTTCACCAGCTGGATGATTTGGTAGAGCTTCGCTTGATTTGCATGCCTCAGCTCTCTGTTGATGATCATGAGCCAGCTAGGGGGAGGGGATGCCGTGTCATGATTTCAGTTGACGAGGAACAAACTTCTGATACTTGA
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| Protein seq | MSLPPAAIPSRSTMDMRLGDLVIQEATFLSDVPRQVSSMKAELSQMQCFLNVVDAKCLEGNSMMKNLASNIQDVAYRVEEVIDNAHFIFRRRKTSVSKYTHIFGDSIDLREVGKNIQVIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIAQIKSYLLDQNNMNLTVISIVGQAGAGKSTLAKLAYSSVITEGYFHKYGWVSISPKYSALEVLRDLVRQIRGTGKISERKSMHLNFYGETEVSKLIFDFLKEERYLIVLDDIWTTDTWDKIKSVFPDKGNGSRIILTTRDMEVGQHPKTKVQIHTPDLLDEDKSWELFQKKAFPHDVQFTELEVVGKKLSKKCNGLPLALVVLGCFLSRNHNIHTWEKMVASVDWEIMKKEGDVGRILALSYHNMSNNLKACFLYTASFPEDYPITVHVLKKMWIAEGFVPNIRGYTQEEVAYRYVEELAQRCMIQIEERSKNIGWIKKIKVHDVLREWGIGQARKEGFLKVCSSGTDVETYYADEQRCYRVAFHGYFDNEVGKSVLNLRSVLAFNPDGKRLFSFNGLHLLRVLHFCSSLKTCTLPEEINKLVHLRYLGLEGSTVFMFPSYMKGLRNLQILEASTATVKALPSSLWSIAALKHVHVYQVLHWKAQEIRTKRSLQTLYVFSIMQCDALTWKRTIRSLQKMSQHVSWCLGIASTKRVKEKETQEHEEYNLDIRVDALESKVDGLELSGCFKERHVLNDVLPHHNLFPNFLLQLKISCPNILNDDPMPILERLPRLEVLEIVNSSYTGKRITCSSEGFLALRSLVLMDIGLEEWNLQQGSMAFLAVLTLKCTMLRSISNVLHQLDDLVELRLICMPQLSVDDHEPARGRGCRVMISVDEEQTSDT |
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| Function | Probable disease resistance protein At1g58390 [UniProtKB/Swiss-Prot:Q8W474] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_10g0004840 | OsIR64_10g0004840.02 | Chr10 | 6427663 | 6431254 | - | NAM | ||
| CDS seq | ATGAAAGCAGAACTGAGCCAGATGCAATGCTTCTTAAATGTTGTGGATGCCAAATGTTTGGAAGGAAACAGCATGATGAAAAATCTGGCCAGTAATATTCAAGACGTGGCATACCGGGTGGAAGAGGTTATTGACAATGCTCATTTCATTTTTAGGAGGAGAAAGACTTCTGTATCAAAATATACTCACATCTTTGGTGATTCCATTGACCTCCGTGAGGTTGGCAAAAACATACAAGTTATAAGAAAGGAAATTAGTGAGATTTTTGAGCGGTACAACAGATACAACGCAGTTAATTCTAGCACTTCAACGGAAGCACAGCCCATTTTTAGGGAGGATGAGGATTTCTATGCACAAAGGCTTGTGCCGCCGGGTTTGGATCAAGGAATGGATATAGTTGGATTCGATCATGAAATTGCACAAATTAAGAGTTACTTGCTTGACCAAAATAACATGAATCTAACTGTTATATCGATTGTTGGTCAGGCAGGGGCTGGGAAGTCCACACTTGCAAAACTAGCTTATAGTTCAGTCATAACTGAAGGTTATTTTCACAAATATGGTTGGGTATCCATTTCTCCAAAATATTCTGCCCTTGAAGTATTAAGAGATCTCGTGCGACAGATAAGGGGCACTGGGAAGATAAGCGAGCGAAAGAGCATGCATTTAAATTTCTATGGTGAGACAGAGGTTTCAAAACTTATTTTTGATTTTCTGAAGGAAGAGCGCTACCTTATTGTTTTGGATGACATCTGGACAACAGATACCTGGGACAAGATCAAATCAGTATTTCCTGACAAAGGAAATGGAAGTAGAATAATTCTGACTACCCGTGATATGGAAGTTGGACAACATCCTAAAACTAAAGTGCAAATTCATACCCCTGACCTATTAGACGAAGACAAGAGCTGGGAACTTTTCCAGAAGAAGGCATTTCCACATGATGTGCAATTCACAGAACTTGAGGTGGTGGGGAAAAAACTCTCCAAGAAATGCAATGGCTTGCCACTTGCTCTAGTGGTTTTAGGTTGCTTCCTTTCACGAAACCACAATATTCATACATGGGAGAAAATGGTTGCTAGTGTAGACTGGGAAATCATGAAAAAGGAGGGCGATGTTGGACGTATATTAGCTCTAAGTTATCACAATATGTCAAATAACCTTAAAGCTTGCTTCCTTTATACTGCATCCTTTCCCGAGGACTACCCTATCACAGTTCATGTTCTTAAAAAGATGTGGATTGCTGAGGGATTTGTCCCAAATATAAGAGGATATACACAAGAAGAAGTTGCCTACAGATATGTAGAAGAGCTGGCACAGAGATGTATGATCCAAATTGAAGAAAGAAGTAAAAACATTGGGTGGATAAAGAAAATAAAAGTTCATGATGTGTTGCGTGAGTGGGGAATTGGACAAGCCAGGAAGGAAGGTTTCTTGAAAGTTTGCTCAAGCGGCACAGATGTGGAGACTTATTATGCAGATGAACAGAGGTGTTACCGTGTAGCATTTCATGGTTACTTTGATAATGAAGTGGGAAAATCAGTTCTGAATCTCCGTTCTGTGCTGGCCTTCAACCCTGATGGCAAACGTCTGTTTTCTTTCAATGGGTTGCATTTGTTGAGGGTGCTTCATTTTTGCAGTTCCTTAAAGACATGTACCTTGCCTGAAGAAATAAACAAATTGGTACATCTGAGATACCTGGGTTTGGAAGGTAGTACTGTTTTCATGTTCCCTTCTTATATGAAAGGTCTTAGAAACTTGCAAATTCTTGAAGCAAGTACAGCTACTGTCAAGGCACTTCCAAGTTCCCTCTGGAGCATCGCAGCACTAAAGCATGTTCATGTCTACCAAGTACTGCATTGGAAAGCCCAGGAGATTAGAACGAAACGAAGCTTGCAGACTCTTTATTGTGATGCTCTGACGTGGAAAAGAACAATCAGGTCTCTGCAAAAAATGAGCCAACATGTTTCCTGGTGCTTAGGGATAGCCTCTACTAAACGCGTGAAGGAAAAAGAGACCCAAGAACATGAAGAATACAATTTAGATATAAGGGTAGATGCCTTAGAATCCAAAGTTGATGGTTTAGAATTGTCTGGATGTTTTAAAGAGCGTCACGTTCTGAATGATGTGCTTCCACATCATAATCTATTCCCAAACTTTCTATTGCAGCTCAAGATATCTTGTCCCAATATACTAAATGATGATCCAATGCCAATTCTGGAGAGACTTCCACGTCTTGAAGTGCTTGAAATTGTTAACTCATCATACACAGGAAAGAGAATAACATGTTCTTCCGAGGGATTCCTTGCATTACGCAGTTTGGTACTTATGGATATTGGTTTGGAGGAGTGGAATTTGCAGCAGGGATCCATGGCATTTCTCGCTGTTTTGACTCTCAAGTGTACCATGCTGAGGAGCATCTCAAATGTACTTCACCAGCTGGATGATTTGGTAGAGCTTCGCTTGATTTGCATGCCTCAGCTCTCTGTTGATGATCATGAGCCAGCTAGGGGGAGGGGATGCCGTGTCATGATTTCAGTTGACGAGGAACAAACTTCTGATACTTGA
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| Protein seq | MKAELSQMQCFLNVVDAKCLEGNSMMKNLASNIQDVAYRVEEVIDNAHFIFRRRKTSVSKYTHIFGDSIDLREVGKNIQVIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIAQIKSYLLDQNNMNLTVISIVGQAGAGKSTLAKLAYSSVITEGYFHKYGWVSISPKYSALEVLRDLVRQIRGTGKISERKSMHLNFYGETEVSKLIFDFLKEERYLIVLDDIWTTDTWDKIKSVFPDKGNGSRIILTTRDMEVGQHPKTKVQIHTPDLLDEDKSWELFQKKAFPHDVQFTELEVVGKKLSKKCNGLPLALVVLGCFLSRNHNIHTWEKMVASVDWEIMKKEGDVGRILALSYHNMSNNLKACFLYTASFPEDYPITVHVLKKMWIAEGFVPNIRGYTQEEVAYRYVEELAQRCMIQIEERSKNIGWIKKIKVHDVLREWGIGQARKEGFLKVCSSGTDVETYYADEQRCYRVAFHGYFDNEVGKSVLNLRSVLAFNPDGKRLFSFNGLHLLRVLHFCSSLKTCTLPEEINKLVHLRYLGLEGSTVFMFPSYMKGLRNLQILEASTATVKALPSSLWSIAALKHVHVYQVLHWKAQEIRTKRSLQTLYCDALTWKRTIRSLQKMSQHVSWCLGIASTKRVKEKETQEHEEYNLDIRVDALESKVDGLELSGCFKERHVLNDVLPHHNLFPNFLLQLKISCPNILNDDPMPILERLPRLEVLEIVNSSYTGKRITCSSEGFLALRSLVLMDIGLEEWNLQQGSMAFLAVLTLKCTMLRSISNVLHQLDDLVELRLICMPQLSVDDHEPARGRGCRVMISVDEEQTSDT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_10g0004840 | OsIR64_10g0004840.03 | Chr10 | 6427772 | 6431254 | - | NAM | ||
| CDS seq | ATGTCTCTTCCCCCAGCCGCAATCCCCTCTCGCTCAACCATGGATATGAGGCTTGGTGACCTTGTCATCCAAGAAGCTACCTTTTTAAGTGATGTTCCTCGACAAGTATCATCCATGAAAGCAGAACTGAGCCAGATGCAATGCTTCTTAAATGTTGTGGATGCCAAATGTTTGGAAGGAAACAGCATGATGAAAAATCTGGCCAGTAATATTCAAGACGTGGCATACCGGGTGGAAGAGGTTATTGACAATGCTCATTTCATTTTTAGGAGGAGAAAGACTTCTGTATCAAAATATACTCACATCTTTGGTGATTCCATTGACCTCCGTGAGGTTGGCAAAAACATACAAGTTATAAGAAAGGAAATTAGTGAGATTTTTGAGCGGTACAACAGATACAACGCAGTTAATTCTAGCACTTCAACGGAAGCACAGCCCATTTTTAGGGAGGATGAGGATTTCTATGCACAAAGGCTTGTGCCGCCGGGTTTGGATCAAGGAATGGATATAGTTGGATTCGATCATGAAATTGCACAAATTAAGAGTTACTTGCTTGACCAAAATAACATGAATCTAACTGTTATATCGATTGTTGGTCAGGCAGGGGCTGGGAAGTCCACACTTGCAAAACTAGCTTATAGTTCAGTCATAACTGAAGGTTATTTTCACAAATATGGTTGGGTATCCATTTCTCCAAAATATTCTGCCCTTGAAGTATTAAGAGATCTCGTGCGACAGATAAGGGGCACTGGGAAGATAAGCGAGCGAAAGAGCATGCATTTAAATTTCTATGGTGAGACAGAGGTTTCAAAACTTATTTTTGATTTTCTGAAGGAAGAGCGCTACCTTATTGTTTTGGATGACATCTGGACAACAGATACCTGGGACAAGATCAAATCAGTATTTCCTGACAAAGGAAATGGAAGTAGAATAATTCTGACTACCCGTGATATGGAAGTTGGACAACATCCTAAAACTAAAGTGCAAATTCATACCCCTGACCTATTAGACGAAGACAAGAGCTGGGAACTTTTCCAGAAGAAGGCATTTCCACATGATGTGCAATTCACAGAACTTGAGGTGGTGGGGAAAAAACTCTCCAAGAAATGCAATGGCTTGCCACTTGCTCTAGTGGTTTTAGGTTGCTTCCTTTCACGAAACCACAATATTCATACATGGGAGAAAATGGTTGCTAGTGTAGACTGGGAAATCATGAAAAAGGAGGGCGATGTTGGACGTATATTAGCTCTAAGTTATCACAATATGTCAAATAACCTTAAAGCTTGCTTCCTTTATACTGCATCCTTTCCCGAGGACTACCCTATCACAGTTCATGTTCTTAAAAAGATGTGGATTGCTGAGGGATTTGTCCCAAATATAAGAGGATATACACAAGAAGAAGTTGCCTACAGATATGTAGAAGAGCTGGCACAGAGATGTATGATCCAAATTGAAGAAAGAAGTAAAAACATTGGGTGGATAAAGAAAATAAAAGTTCATGATGTGTTGCGTGAGTGGGGAATTGGACAAGCCAGGAAGGAAGGTTTCTTGAAAGTTTGCTCAAGCGGCACAGATGTGGAGACTTATTATGCAGATGAACAGAGGTGTTACCGTGTAGCATTTCATGGTTACTTTGATAATGAAGTGGGAAAATCAGTTCTGAATCTCCGTTCTGTGCTGGCCTTCAACCCTGATGGCAAACGTCTGTTTTCTTTCAATGGGTTGCATTTGTTGAGGGTGCTTCATTTTTGCAGTTCCTTAAAGACATGTACCTTGCCTGAAGAAATAAACAAATTGGTACATCTGAGATACCTGGGTTTGGAAGGTAGTACTGTTTTCATGTTCCCTTCTTATATGAAAGGTCTTAGAAACTTGCAAATTCTTGAAGCAAGTACAGCTACTGTCAAGGCACTTCCAAGTTCCCTCTGGAGCATCGCAGCACTAAAGCATGTTCATGTCTACCAAGTACTGCATTGGAAAGCCCAGGAGATTAGAACGAAACGAAGCTTGCAGACTCTTTATGTATTTTCCATAATGCAGTGTGATGCTCTGACGTGGAAAAGAACAATCAGGTCTCTGCAAAAAATGAGCCAACATGTTTCCTGGTGCTTAGGGATAGCCTCTACTAAACGCGTGAAGGAAAAAGAGACCCAAGAACATGAAGAATACAATTTAGATATAAGGGTAGATGCCTTAGAATCCAAAGTTGATGGTTTAGAATTGTCTGGATGTTTTAAAGAGCGTCACGTTCTGAATGATGTGCTTCCACATCATAATCTATTCCCAAACTTTCTATTGCAGCTCAAGATATCTTGTCCCAATATACTAAATGATGATCCAATGCCAATTCTGGAGAGACTTCCACGTCTTGAAGTGCTTGAAATTGTTAACTCATCATACACAGGAAAGAGAATAACATGTTCTTCCGAGGGATTCCTTGCATTACGCAGTTTGGTACTTATGGATATTGGTTTGGAGGAGTGGAATTTGCAGCAGGGATCCATGGCATTTCTCGCTGTTTTGACTCTCAAGTGTACCATGCTGAGGAGCATCTCAAATGTACTTCACCAGCTGGATGATTTGGTAGAGCTTCGCTTGATTTGCATGCCTCAGCTCTCTGTTGATGATCATGAGCCAGCTAGGGGGAGGGGATGCCGTGTCATGATTTCAGTTGACGAGGAACAAACTTCTGATACTTGA
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| Protein seq | MSLPPAAIPSRSTMDMRLGDLVIQEATFLSDVPRQVSSMKAELSQMQCFLNVVDAKCLEGNSMMKNLASNIQDVAYRVEEVIDNAHFIFRRRKTSVSKYTHIFGDSIDLREVGKNIQVIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIAQIKSYLLDQNNMNLTVISIVGQAGAGKSTLAKLAYSSVITEGYFHKYGWVSISPKYSALEVLRDLVRQIRGTGKISERKSMHLNFYGETEVSKLIFDFLKEERYLIVLDDIWTTDTWDKIKSVFPDKGNGSRIILTTRDMEVGQHPKTKVQIHTPDLLDEDKSWELFQKKAFPHDVQFTELEVVGKKLSKKCNGLPLALVVLGCFLSRNHNIHTWEKMVASVDWEIMKKEGDVGRILALSYHNMSNNLKACFLYTASFPEDYPITVHVLKKMWIAEGFVPNIRGYTQEEVAYRYVEELAQRCMIQIEERSKNIGWIKKIKVHDVLREWGIGQARKEGFLKVCSSGTDVETYYADEQRCYRVAFHGYFDNEVGKSVLNLRSVLAFNPDGKRLFSFNGLHLLRVLHFCSSLKTCTLPEEINKLVHLRYLGLEGSTVFMFPSYMKGLRNLQILEASTATVKALPSSLWSIAALKHVHVYQVLHWKAQEIRTKRSLQTLYVFSIMQCDALTWKRTIRSLQKMSQHVSWCLGIASTKRVKEKETQEHEEYNLDIRVDALESKVDGLELSGCFKERHVLNDVLPHHNLFPNFLLQLKISCPNILNDDPMPILERLPRLEVLEIVNSSYTGKRITCSSEGFLALRSLVLMDIGLEEWNLQQGSMAFLAVLTLKCTMLRSISNVLHQLDDLVELRLICMPQLSVDDHEPARGRGCRVMISVDEEQTSDT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_10g0004840 | OsIR64_10g0004840.01 | Chr10 | 6427663 | 6431268 | - | NAM | ||
| CDS seq | ATGACAGCATCAGTAGTTTCCTCAGTTTTGCAGAGGCTTGGTGACCTTGTCATCCAAGAAGCTACCTTTTTAAGTGATGTTCCTCGACAAGTATCATCCATGAAAGCAGAACTGAGCCAGATGCAATGCTTCTTAAATGTTGTGGATGCCAAATGTTTGGAAGGAAACAGCATGATGAAAAATCTGGCCAGTAATATTCAAGACGTGGCATACCGGGTGGAAGAGGTTATTGACAATGCTCATTTCATTTTTAGGAGGAGAAAGACTTCTGTATCAAAATATACTCACATCTTTGGTGATTCCATTGACCTCCGTGAGGTTGGCAAAAACATACAAGTTATAAGAAAGGAAATTAGTGAGATTTTTGAGCGGTACAACAGATACAACGCAGTTAATTCTAGCACTTCAACGGAAGCACAGCCCATTTTTAGGGAGGATGAGGATTTCTATGCACAAAGGCTTGTGCCGCCGGGTTTGGATCAAGGAATGGATATAGTTGGATTCGATCATGAAATTGCACAAATTAAGAGTTACTTGCTTGACCAAAATAACATGAATCTAACTGTTATATCGATTGTTGGTCAGGCAGGGGCTGGGAAGTCCACACTTGCAAAACTAGCTTATAGTTCAGTCATAACTGAAGGTTATTTTCACAAATATGGTTGGGTATCCATTTCTCCAAAATATTCTGCCCTTGAAGTATTAAGAGATCTCGTGCGACAGATAAGGGGCACTGGGAAGATAAGCGAGCGAAAGAGCATGCATTTAAATTTCTATGGTGAGACAGAGGTTTCAAAACTTATTTTTGATTTTCTGAAGGAAGAGCGCTACCTTATTGTTTTGGATGACATCTGGACAACAGATACCTGGGACAAGATCAAATCAGTATTTCCTGACAAAGGAAATGGAAGTAGAATAATTCTGACTACCCGTGATATGGAAGTTGGACAACATCCTAAAACTAAAGTGCAAATTCATACCCCTGACCTATTAGACGAAGACAAGAGCTGGGAACTTTTCCAGAAGAAGGCATTTCCACATGATGTGCAATTCACAGAACTTGAGGTGGTGGGGAAAAAACTCTCCAAGAAATGCAATGGCTTGCCACTTGCTCTAGTGGTTTTAGGTTGCTTCCTTTCACGAAACCACAATATTCATACATGGGAGAAAATGGTTGCTAGTGTAGACTGGGAAATCATGAAAAAGGAGGGCGATGTTGGACGTATATTAGCTCTAAGTTATCACAATATGTCAAATAACCTTAAAGCTTGCTTCCTTTATACTGCATCCTTTCCCGAGGACTACCCTATCACAGTTCATGTTCTTAAAAAGATGTGGATTGCTGAGGGATTTGTCCCAAATATAAGAGGATATACACAAGAAGAAGTTGCCTACAGATATGTAGAAGAGCTGGCACAGAGATGTATGATCCAAATTGAAGAAAGAAGTAAAAACATTGGGTGGATAAAGAAAATAAAAGTTCATGATGTGTTGCGTGAGTGGGGAATTGGACAAGCCAGGAAGGAAGGTTTCTTGAAAGTTTGCTCAAGCGGCACAGATGTGGAGACTTATTATGCAGATGAACAGAGGTGTTACCGTGTAGCATTTCATGGTTACTTTGATAATGAAGTGGGAAAATCAGTTCTGAATCTCCGTTCTGTGCTGGCCTTCAACCCTGATGGCAAACGTCTGTTTTCTTTCAATGGGTTGCATTTGTTGAGGGTGCTTCATTTTTGCAGTTCCTTAAAGACATGTACCTTGCCTGAAGAAATAAACAAATTGGTACATCTGAGATACCTGGGTTTGGAAGGTAGTACTGTTTTCATGTTCCCTTCTTATATGAAAGGTCTTAGAAACTTGCAAATTCTTGAAGCAAGTACAGCTACTGTCAAGGCACTTCCAAGTTCCCTCTGGAGCATCGCAGCACTAAAGCATGTTCATGTCTACCAAGTACTGCATTGGAAAGCCCAGGAGATTAGAACGAAACGAAGCTTGCAGACTCTTTATTGTGATGCTCTGACGTGGAAAAGAACAATCAGGTCTCTGCAAAAAATGAGCCAACATGTTTCCTGGTGCTTAGGGATAGCCTCTACTAAACGCGTGAAGGAAAAAGAGACCCAAGAACATGAAGAATACAATTTAGATATAAGGGTAGATGCCTTAGAATCCAAAGTTGATGGTTTAGAATTGTCTGGATGTTTTAAAGAGCGTCACGTTCTGAATGATGTGCTTCCACATCATAATCTATTCCCAAACTTTCTATTGCAGCTCAAGATATCTTGTCCCAATATACTAAATGATGATCCAATGCCAATTCTGGAGAGACTTCCACGTCTTGAAGTGCTTGAAATTGTTAACTCATCATACACAGGAAAGAGAATAACATGTTCTTCCGAGGGATTCCTTGCATTACGCAGTTTGGTACTTATGGATATTGGTTTGGAGGAGTGGAATTTGCAGCAGGGATCCATGGCATTTCTCGCTGTTTTGACTCTCAAGTGTACCATGCTGAGGAGCATCTCAAATGTACTTCACCAGCTGGATGATTTGGTAGAGCTTCGCTTGATTTGCATGCCTCAGCTCTCTGTTGATGATCATGAGCCAGCTAGGGGGAGGGGATGCCGTGTCATGATTTCAGTTGACGAGGAACAAACTTCTGATACTTGA
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| Protein seq | MTASVVSSVLQRLGDLVIQEATFLSDVPRQVSSMKAELSQMQCFLNVVDAKCLEGNSMMKNLASNIQDVAYRVEEVIDNAHFIFRRRKTSVSKYTHIFGDSIDLREVGKNIQVIRKEISEIFERYNRYNAVNSSTSTEAQPIFREDEDFYAQRLVPPGLDQGMDIVGFDHEIAQIKSYLLDQNNMNLTVISIVGQAGAGKSTLAKLAYSSVITEGYFHKYGWVSISPKYSALEVLRDLVRQIRGTGKISERKSMHLNFYGETEVSKLIFDFLKEERYLIVLDDIWTTDTWDKIKSVFPDKGNGSRIILTTRDMEVGQHPKTKVQIHTPDLLDEDKSWELFQKKAFPHDVQFTELEVVGKKLSKKCNGLPLALVVLGCFLSRNHNIHTWEKMVASVDWEIMKKEGDVGRILALSYHNMSNNLKACFLYTASFPEDYPITVHVLKKMWIAEGFVPNIRGYTQEEVAYRYVEELAQRCMIQIEERSKNIGWIKKIKVHDVLREWGIGQARKEGFLKVCSSGTDVETYYADEQRCYRVAFHGYFDNEVGKSVLNLRSVLAFNPDGKRLFSFNGLHLLRVLHFCSSLKTCTLPEEINKLVHLRYLGLEGSTVFMFPSYMKGLRNLQILEASTATVKALPSSLWSIAALKHVHVYQVLHWKAQEIRTKRSLQTLYCDALTWKRTIRSLQKMSQHVSWCLGIASTKRVKEKETQEHEEYNLDIRVDALESKVDGLELSGCFKERHVLNDVLPHHNLFPNFLLQLKISCPNILNDDPMPILERLPRLEVLEIVNSSYTGKRITCSSEGFLALRSLVLMDIGLEEWNLQQGSMAFLAVLTLKCTMLRSISNVLHQLDDLVELRLICMPQLSVDDHEPARGRGCRVMISVDEEQTSDT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 6430423 | 6431087 | - | OsIR64_10g0004840.02 | OsIR64_10g0004840.02,OsIR64_10g0004840.03 | All |
| A3 | Chr10 | 6430440 | 6431087 | - | OsIR64_10g0004840.01 | OsIR64_10g0004840.02,OsIR64_10g0004840.01 | All |
| A3 | Chr10 | 6430423 | 6431087 | - | OsIR64_10g0004840.01 | OsIR64_10g0004840.03,OsIR64_10g0004840.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.498853 | 0.245753 | 0.529066 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0183000 | RBH | 0.731028 | 1.346163 | 0.840351 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g10360 | RBH | 0.453035 | 0.831343 | 0.333694 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0183000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0004690 | RBH | 0.658870 | 7.428671 | 2.162948 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004640 | RBH | 0.162219 | 1.199872 | 1.150827 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004570 | RBH | 0.906818 | 1.421762 | 4.786685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0004910 | RBH | 0.296016 | 0.083119 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004660 | RBH | 1.299265 | 3.867685 | 5.184181 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0096600 | RBH | 4.719652 | 10.904225 | 13.550748 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0107600 | RBH | 6.8030145 | 9.574841 | 9.34657 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004700 | RBH | 0.146984 | 0.085321 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004680 | RBH | 0.588790 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004820 | RBH | 3.286143 | 11.920065 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0004610 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0004940 | RBH | 0.291036 | 5.015203 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G004770 | RBH | 0.198806 | 2.249056 | 1.188862 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004810 | RBH | 0.604595 | 14.741018 | 2.499516 |
