Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_09g0020280 | OGI:09066230 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr09:24145522-24147320 | ||||||||
| Gene Symbol | HAP3L, OsHAP3L | ||||||||||
| DNA seq | GTATCAAAGCCAAAGTGGTGCATTTTCAGGCTTATATTGTCCTGAAAACACCGCTTCAACGGTGTCTGCCCCTTTTGAATGGTTTAAACAGGAATTTGTCAACTGATGAAGCCGCCAAGTGCCTTAACTATGATCGACAGAAGGAGCTAACACAGATGAATTATGCAGCATCTGCTCAAGTCTACAAATATTTTTCAGTGCAAACTGACATATGGAAACAAGCACCACACAGCGTTTACACCGCAAAGGGGCGTAATGCTAGCGTATTTCAGATTCAGCATAGAACTGCCCGGTTTCCAGAAATGTTAATCCTCATCAGTCTTGCCATTATCAGCTGCATCGTTTTGTTCTTGTGGCAGTGACTCCTTATCTATTTTCCTTCTCTTTTCAGCTTTCTTTTGGGTTGTTTCTGATCTCCGGGCGGCATTTTTGTTCCTAAATTCTGAAAGAGGCATGGCACAAATGGGGGAAAAAAGCTTGTGTAAGGTGGATAGATAGACACAATTAAAGGTTCTGATAGACGAACAAATCATCTCTAAATCAGAAAGGATCAAACAGAATGCTGTGAGACCCCAAGAAAATTGAAGTGATTGCAGTTACGTACATATAGTAACTAATGGAATTGCTCAGTTGTACGAATATTAAAGTTCAGTAACCTATATTATTGTAAACACTCAGATCTTTAAGGCAAAGGACTAAAATAACTAAGTATTTCCCTGAGTAGAAACATGTGGCACTTCATCCTACATTTGACATTTGTAATACCAAACACTGAATGGAAGTAGACAATACTGACCTTGCAAAGAAGTATTAAGGGGCTCTACAAACTCAGGGAACTCCATTTCATCGAGTGCCTTGAGGACATCATCAGCGTTGATCGTCTGCCTCTTTGATTCTTTGCACATGTCATTGGCACTGCAAACAATTTCTATAAGTAAAGGCGCTGCAAATAAAATCATCACGAATACTTACAAAGAGGTATGGTACTGCAGTTTGATTCTAATAGATCTACACAAAAAGTCTTCTTTTTTTAAAAAAGAAAATGTTCACGAAGGGAAGAAAAATGATTCTTATGAGTTTGCCTGTACCCTCAAGTACATTACTAGAGTTAAGAAAGTTTATGAACAAATGCAGATCGTGGATCACCTGCACCATCAAATGTCAATAATTTTTTTCCCAAAGTAATGTCAAGCAATTCTGGCCATGAGCATAAATTCACTTAGCTTTACCCAGCGAAATAAATAAATTCACTAATAGCTTTCTCCCCCAAACCCCTAGAGATTAAACAGAAACATGAAATCCATGACCAAAAACGTGAAAGTCATACTATATCAGTATGAGTATCTATATTCATAGTCCATATCCATAGATAGATGGAAGAATAAGGCTAAGGGGGGATGGGGTACGGACGTGGCGGAGAGGTAGTGGATGAAGATGCGGGCGCTCTCGGTGAAGGCGGACATGGCGTCCTTGTTGACGATGACCTCGGCCCCGCCGGCGGCGACCTGGGCGAGCTTCTCCTTCACTAGGCGCCGCACGATGGCCTTGGGCAGCTCCTCCACCTCCGCCTCCGCCATGGACGCCGCCGCCGCCGCTTGGCCCGGCTGCTTCTCAGGTTGGGAATGGGATCCCCCACCTTCCCCCGTCTCCCCAGCCATCTCCCTCTCTCTCTCTTTCTCAGGTTGGGAACGGTGGTGCAGCGGCGATTAGACAAGGCAAACCCTAGCCTAGTGAAAAATTGACGAGTCGCGCGCGCTTTGTCTCTTCTTCCCCCCTCCCTTCCCGCGCTTTGCTTCTGC
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| CDS seq | ATGGCTGGGGAGACGGGGGAAGGTGGGGGATCCCATTCCCAACCTGAGAAGCAGCCGGGCCAAGCGGCGGCGGCGGCGTCCATGGCGGAGGCGGAGGTGGAGGAGCTGCCCAAGGCCATCGTGCGGCGCCTAGTGAAGGAGAAGCTCGCCCAGGTCGCCGCCGGCGGGGCCGAGGTCATCGTCAACAAGGACGCCATGTCCGCCTTCACCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACTGCCAATGACATGTGCAAAGAATCAAAGAGGCAGACGATCAACGCTGATGATGTCCTCAAGGCACTCGATGAAATGGAGTTCCCTGAGTTTGTAGAGCCCCTTAATACTTCTTTGCAAGAATTTAGGAACAAAAATGCCGCCCGGAGATCAGAAACAACCCAAAAGAAAGCTGAAAAGAGAAGGAAAATAGATAAGGAGTCACTGCCACAAGAACAAAACGATGCAGCTGATAATGGCAAGACTGATGAGGATTAA
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| Protein seq | MAGETGEGGGSHSQPEKQPGQAAAAASMAEAEVEELPKAIVRRLVKEKLAQVAAGGAEVIVNKDAMSAFTESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNKNAARRSETTQKKAEKRRKIDKESLPQEQNDAADNGKTDED |
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| Function | DNA polymerase epsilon subunit 3 [UniProtKB/Swiss-Prot:Q5R4W3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0020280 | OsIR64_09g0020280.01 | Chr09 | 24145522 | 24147320 | - | NAM | ||
| CDS seq | ATGGCTGGGGAGACGGGGGAAGGTGGGGGATCCCATTCCCAACCTGAGAAGCAGCCGGGCCAAGCGGCGGCGGCGGCGTCCATGGCGGAGGCGGAGGTGGAGGAGCTGCCCAAGGCCATCGTGCGGCGCCTAGTGAAGGAGAAGCTCGCCCAGGTCGCCGCCGGCGGGGCCGAGGTCATCGTCAACAAGGACGCCATGTCCGCCTTCACCGAGAGCGCCCGCATCTTCATCCACTACCTCTCCGCCACTGCCAATGACATGTGCAAAGAATCAAAGAGGCAGACGATCAACGCTGATGATGTCCTCAAGGCACTCGATGAAATGGAGTTCCCTGAGTTTGTAGAGCCCCTTAATACTTCTTTGCAAGAATTTAGGAACAAAAATGCCGCCCGGAGATCAGAAACAACCCAAAAGAAAGCTGAAAAGAGAAGGAAAATAGATAAGGAGTCACTGCCACAAGAACAAAACGATGCAGCTGATAATGGCAAGACTGATGAGGATTAA
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| Protein seq | MAGETGEGGGSHSQPEKQPGQAAAAASMAEAEVEELPKAIVRRLVKEKLAQVAAGGAEVIVNKDAMSAFTESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNKNAARRSETTQKKAEKRRKIDKESLPQEQNDAADNGKTDED |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.389194 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0568200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0568200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020300 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020510 | RBH | 0.0 | 2.346804 | 0.696946 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020270 | RBH | 0.0 | 0.124182 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020500 | RBH | 0.0 | 0.0 | 1.186329 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0383700 | RBH | 0.305341 | 0.24815 | 0.1528625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0373300 | RBH | 1.9029315 | 0.5737115 | 13.1369135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020340 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020090 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020120 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020260 | RBH | 0.0 | 4.006792 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020670 | RBH | 0.0 | 3.686056 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020420 | RBH | 0.0 | 0.000000 | 0.000000 |
