Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_09g0013400 | OGI:01011440 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr09:18857744-18861977 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGTATACTATATCTCTTTCTCTCTTTATAGAGAAAGCACCATCATCCAAATGAAACTAATTACAGCAGACATCCATTTTTAACCGGTGCAAATACACTACCCAAAAAAGACACAATTTACTACTAGAAGCATACTTTACTTAAGGTCGAATATACTGACCAATCCACAGGTTACATAATCTTAATAAATTGCTCATAGGATGAAAAAACACACGCCTCTCAAAAATTTGTTCACGTACTTAAAACAAAACAACTTCTAACAATCAGAGGAGTCCCAACTAAACTACAGGGAACCATATTCTAAAGTTTTCTCTTGTACGTAGATGTCCGGCCGCAAGTCCGCGAATTATGACCAGCTTCGTGGCATGTGTGGCAAAACCTACGAGGAAAGGGCACTTCATCCTCATGATCAATGACTTGGTTTTCTTCTTCAACGGACTCACACTCATTGGTTGTGTTCTTCTTCTCAATCCCTACTTCTTTTCTTCTTTTCAGGCTGGCAACCTCACCACCCGATTTATACCTATTCACCTTAGGTCTTCCTCTGCTTCTCTTTTTCAACGGTGGAAGTATATCAGCAGTCAAATTTCCACCCTCGTCCTCACTTGGCACGTCATACTCACTGTCCTCATCACCTCCACCAACATCTTCGTTTCCATCTTCAGTCAATACAGTAGACCTTGATTTATGCCTAGCTGCTCGCTTCGGAGCTTCTCTACTATTGTCACCATCATCCAAAGATAACTAATTTTTCATGTCCTCCAAAAGCTTATTCATGACTGTCATTGCCATCTTAAATGTCTGCACATCTTTGTTAGCAATCTTAGCCACCTCCACAGTCTTCCTATTCAGCATTACATGTCTGTAACTCCTCGATTGTGAAGCATCGACATCATCTTTGTACCCATGTAGATGAGGTGGTATAGTATCCCGAGCATCCTTCGTCCATCTTTTCAGTATATACCTCTCTGGAATTCTTGACAAACCATACTGAACAAGTACCTAAAGGGACAAACCAATGCATTACTTCAAAAAGCCAAACACTACCGAACATATAGTACGACCCAATGAAAATAAATGTTTAGACAGTAGAAGAAACAAATACCCTTAAGATGTGGCTGCACAGAATCCCCTTATGCTCAAACATCTTGCAAACGCATGAAAATTCCTCTCTTTCCAAATCACAAGACACCTGATATTCCTTCCTAAGGAATGATTCTTGCGAGTTCATCCGCACAACTTGCACGGTGCTTTCGTCCTCCCCAGGTTTCACCATGTAAGATAGACTATCGGTTAACTCCTCAGAGAACAATTGGAAAACAACCCTAGTATATACTTGGGATGCGTGAATCTCTATCGGTGACCTTGTTTTAATTTCAACCTTGTCCTGCACCAAGCGACACCAAATGTTGATTACACATATCCATAAAAAGAGGTCAACAAACCTATCACAGTGGATACTTACATTACTGGTTTGGAATTCCTCCGAGTCCTCTTTTTGCAGCTTCTCATTGAAAAACCGGTCGTACCTCTTAACAAAGCCATTCATAGAGCTAGAGGGTGACACAAACATCTTAAACACATGGTTTGCAGACTCACTTCTCTGTGTAGTAGTCATCCCAGCAAAGAACCTATGGGAAAAATATACAAATGCCCATTTACGCCTTATGTCCCATATGTGACGCAAGTAAACACTTTTTTCCAGATTATAATCTCTAATCAGTTTGTGCCAAGCCGCAACAAACTCCTCCTCTGTTAGTGTCTGCGTAAGAACCTTATGAAATGCTTTCTTGAATGTATGACGCTTGGAGTATATGTTCCCCATAAATTCCTTTGCTTTCTTCAGTACATGCCACTTGCACACACGATGGATTGTATTGGGAAATACTGTTCTAATGGCAGCTGCCATGGAAGGACAATTGTCTGCAAAATTAAGGACAATAATAAGCATCCAATGAATAACCCATCATATACTTAAAATAAGTAAAGTATAACGAATTCATTCCAAATTATAAATTCGGCCAAATACTCACATACCTGTTAATATTCCAATAGGAACCTTCCCATTCATGCACTCTTTGAATGTATTGAATAACCATGTAAATGATTCTTCAGTCTCTTCTCTAAGCAGGGCACAACCAAAGAAGGTGCTCTGAAAGAGATTGTTTACACCAACAAATGGTGCAAAGGGCATATTATACTTGTTTGTTTTGTAGGTAGTATCAAATGTGATGACATCACCAAAATGCTCAAAGTTCAATCTGGACACAGCATGAGACCAAAACATGTTCTTCACACGGCAAGCCTCGTCAACTTGTATACTATAAAAGAAATTCTTGCTCCTTTTTTGCAAATCCTTCAAGACATCAAGTGTTTTTTGCATGTCATCGCTGCTCTCATCCCGCCTAATTGCATAAGCAAGCCTATCCATAGCTTTTCTCGTGAATGGAACCATGGAAGGTCCGCCATGCATCCCAGACAACATACCATACATATTTGTAAGACTCATACTACTGTCTACCATCTCTTCAATAATACCACGAGTCCCCTCATCTATTTGATTGTGCGACTGATAATTCTTAGTAACTCCTACACTTTTTTTCATAGGATGGTTGTGCGCAGAAACAACCTTTGTTACTGACCAGCCACTACCAGCTCCAGACCTATTTATCTTCATCATTGCTGGGCACCCAATTCGAACGGAAGGCTTCTTGGTTTTTGGGTTCCTCCCCTGCATAAAAGATTTCGAAATTAACACATAGTACGTCAAGTCTTTATTTAGGTAAATTTCTGCTACTAAGATATTGTTACATAATGTATGTACCTGGTGAGAACAACATATTTGCCGCATTGTTCTCTGCTTTTCAGTATTCATGCGATCTTTGTCCAGTCGTATCCCAAATCCTTTACTAACAGCATAAACATTATAAAAATTATAGGCATCCCTCTCAGTCTTAAATCTTTGTCCCAGCATCGGAGTAAGAATTTGAGGATCAGCATACTCAGGAGGTATGACAGCACTGCTATCAACATTATCTACCACCATTCTGAAAAGAAAATGTACAATCAGTTTTCAGAAAATACCACCAATATCCTGGCTCAAAAAAAATCGTAAAAATCCGTAACATGCTGATACAAACCTTTCCATCGGTATCCCAGCTCCTTCTTTTTCATATGGGTTTCCTTCTGTCCAATCCAGTGAAGGGACCAAATTTCTGTATTGGAGACACTATATTTAAAAATAGCATATACTACTACTAACTGAAAATGTAGTTTACAAAAAACAACCTAATTTATAATCAGTACTTACTGCAAATTTAAAAAAAATATATGTTGTACTACTCACAAAAAAAATATGGGGAGCTTTGTTCTGAACTTTGTTAGATGATTGTATATACTCATTTTTTAAAATGGAGGGGTTCTTTCTGATTTATGTTGAATGATAGTATGTACTGAATTTTTCTATGGGTTACGTACTGAATTTCTCTAGACGATAGCATATACTGCATTTTCCACATGTATACTAAATCTTTCCATAGTGATTCGTAGTCTGAACTTTGATACGCACCAGTATTTACTGAATTTTTCACATATATACTGAATTTTTCTATGGGAGGCTATGTACTGAACTTTGTTATACGACAGCATATAGTATGTTCTGAATTTTCTGTGCAACATACTGAACTCTGAACTTTTCTATGTGATACATACTGAACTTTCCTAGAAGATAGCATATACTGAACTTTCTCATGTGACACATACTGAACATTTCTATGTAGTATATACTGCTTTTAAGTGAATGCTCAGCTGACACCTAGCCATGCACATACCTTGTCTCTGGAATTCCATGCCCTGAATCATGTGAGCCAACCTGCGACGGCACGTCCTCCTCCATTGCTACACGGCTTCATAACACAATCAAGATGTGTCAGTATCTGGCTACCATTTACAGAGTTTTAAATTCACGGAAGCTACGATCCAACCTTGACTGACCACCATCCGGTTGTGAATCATGGACAGATTGACTAATACCATCTACTATGTCCATGGTAGGGTTGCGCTCGTCCATAAGAATTTCCCTGAATTGATGATTTAGAATTGCTCAAGTTCACACGGCGAAATTCAGAGAAAAAAAACCAGCGGCACATACTGAAATAAATCACTGAAACAGAACAACATACCTTGATCCATCCGTACCATCAGAAGGTCTGTGGTTCTTCACTTGTTTATCCAT
More
|
||||||||||
| CDS seq | ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCAGGTTGGCTCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTGAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATAGGTCTGGAGCTGGTAGTGGCTGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGTTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTGCGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGAGGAATTTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCGATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATTAG
More
|
||||||||||
| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSQVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTEKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINRSGAGSGWYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRVVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKN |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0013400 | OsIR64_09g0013400.01 | Chr09 | 18857744 | 18861977 | - | NAM | ||
| CDS seq | ATGGATAAACAAGTGAAGAACCACAGACCTTCTGATGGTACGGATGGATCAAGGGAAATTCTTATGGACGAGCGCAACCCTACCATGGACATAGTAGATGGTATTAGTCAATCTGTCCATGATTCACAACCGGATGGTGGTCAGTCAAGCCGTGTAGCAATGGAGGAGGACGTGCCGTCGCAGGTTGGCTCACATGATTCAGGGCATGGAATTCCAGAGACAAGAAATTTGGTCCCTTCACTGGATTGGACAGAAGGAAACCCATATGAAAAAGAAGGAGCTGGGATACCGATGGAAAGAATGGTGGTAGATAATGTTGATAGCAGTGCTGTCATACCTCCTGAGTATGCTGATCCTCAAATTCTTACTCCGATGCTGGGACAAAGATTTAAGACTGAGAGGGATGCCTATAATTTTTATAATGTTTATGCTGTTAGTAAAGGATTTGGGATACGACTGGACAAAGATCGCATGAATACTGAAAAGCAGAGAACAATGCGGCAAATATGTTGTTCTCACCAGGGGAGGAACCCAAAAACCAAGAAGCCTTCCGTTCGAATTGGGTGCCCAGCAATGATGAAGATAAATAGGTCTGGAGCTGGTAGTGGCTGGTACGACCGGTTTTTCAATGAGAAGCTGCAAAAAGAGGACTCGGAGGAATTCCAAACCAGTAATGACAAGGTTGAAATTAAAACAAGGTCACCGATAGAGATTCACGCATCCCAAGTATATACTAGGGTTGTTTTCCAATTGTTCTCTGAGGAGTTAACCGATAGTCTATCTTACATGGTGAAACCTGGGGAGGACGAAAGCACCGTGCAAGTTGTGCGGATGAACTCGCAAGAATCATTCCTTAGGAAGGAATATCAGGTGTCTTGTGATTTGGAAAGAGAGGAATTTTCATGCGTTTGCAAGATGTTTGAGCATAAGGGGATTCTGTGCAGCCACATCTTAAGGGTACTTGTTCAGTATGGTTTGTCAAGAATTCCAGAGAGGTATATACTGAAAAGATGGACGAAGGATGCTCGGGATACTATACCACCTCATCTACATGGGTACAAAGATGATGTCGATGCTTCACAATCGAGGAGTTACAGACATGTAATGCTGAATAGGAAGACTGTGGAGGTGGCTAAGATTGCTAACAAAGATGTGCAGACATTTAAGATGGCAATGACAGTCATGAATAAGCTTTTGGAGGACATGAAAAATTAG
More
|
|||||||
| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSQVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERMVVDNVDSSAVIPPEYADPQILTPMLGQRFKTERDAYNFYNVYAVSKGFGIRLDKDRMNTEKQRTMRQICCSHQGRNPKTKKPSVRIGCPAMMKINRSGAGSGWYDRFFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQVYTRVVFQLFSEELTDSLSYMVKPGEDESTVQVVRMNSQESFLRKEYQVSCDLEREEFSCVCKMFEHKGILCSHILRVLVQYGLSRIPERYILKRWTKDARDTIPPHLHGYKDDVDASQSRSYRHVMLNRKTVEVAKIANKDVQTFKMAMTVMNKLLEDMKN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0354200 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0354200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029090 | SBH | 0.0 | 0.0 | 0.304615 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010180 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009970 | SBH | 0.0 | 0.0 | 1.327690 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009640 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013500 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296400 | RBH | 0.00389 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008890 | SBH | 0.0 | 0.0 | 0.867462 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0320500 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013390 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013160 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028570 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011170 | SBH | 0.0 | 0.0 | 0.0 |
