Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_09g0007040 | OGI:09032630 | 1/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr09:12199750-12203100 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACGGGTCCTTCCTTTTGTTCTTGACTTTTTTTGGGGGGGGGGGGGGGGGCTCCCTGCTTATTTCGGCGTTTTCAACTCGTCCAGCGACATCATTCTGCGTATTGGTGTCAACAGTCGCAATAGAGTCACACGGTATGTCCTCTACTTGGCTGCGCAATCCCTTCAGAACAGCCATAGCCCTGTCGAACGCTACCTTCGATTTGCACACTGCCCTAGCCACTCCAAACGCTTCAATCATCATCATATTTGTCCTGTAACTTTCTTGAACACCATTTGGTCCAGCTGTCTCTCGATCCCGCCTATCAAAGGGCATGTCGCTCTTTGCTTTCATTGTGTACCTCTTTACGATGTAGGCAGCAGGTATCTTCTCAAGTTGTACATGAACAAATGCCCGGAGCATGTGTGTGCAGAACATGCCTAAAATTACATCCAAAAAAAAAGTAGAGAGCATTTAGACCAGCGTATTGCTACGTGTGATAACGGAATGCTGAAAGTGTTAAACATACATAAAACATCGATATCGAGTTTGTACAGTTAAAATACCTGTATGCTCCCACTGTTTGCACTCGCATGTAAATACCCCTGCGTCCATATCTGCAATAAGCTTGAATTGCTTTTGACACCAGTTGTGTTTTTTGGACCGTTTCGTGTGTGACACTAACCACCCGTTGCGGAAATTGTCGTCTTGTGTGATCTTGAAGTTGGTGCTGTCCTGAAGCGCCTCCTCGAACAATCTGAAAGTGGACCTGGTGTAAAGTCTCGACATCTGTATAACAAATGTCCACCGTACAGCCAACACCGGCTTCCCCTGTACAACAGAAATACAAATAGTTGGCGTGAGTTATAATTTAGTAGAATTATATGATTGATGTCAGACCGTTTCCCCTAGTAAAAATATCACTAACCGAGCATGCTCCTGTCTCAGCAGCCTCCTTCTCCTTCCTGTCGGTTATAACCTCCAACATTCTCCGAGCAAAACGGTGTAGCGCGGTTTGGTGGTCAACAAACTTGTGCTTCACCAACTTGTTCATGCTCTCGCTTCGCTGCATCGACGTCATCCTCCCGCAGTATTCCTTCCTAAAGAACGCAGGCACCCACTTCTCCCTGATATCATATAAAGCTTTCATGGTGGGACAGCCCTCCAAATCATACCTCTTTATGAATTGATCCCATGATGTTTCAAACTCATATAGCGTGTAGGTTTGATTGACGCACAACATCATGTCTGGTTCAATTTGACCGTCCCGTGCAAAAATGGTGTTCAACGGGTCAGAGTGGCGGTTGAGGATATGCCACCTACAGAGTCGGTGTATTATCCCAGGGAAGCACCGCCCGACAGCGACTGCCATAGCAGGATCTTGATCTGAAAAAAAATGTTATAAATGGCGGAAAAACTATCGTACAGTAAGTGTATATAAATTGGAGACACGGAAAAATTTAAATGGTGGATGGCAATAGGGGTTATTTGTAGATAGACTTTCCTGTTAGGATGCAGCGCGGAGCCGGGAAATTAGCCATGCACTTGTTGAAGGTGTTGAATAACCACTCGAATGACTCAGCCTTTTCGTCTCTGAGCAAGGCACATCCGAATAGTGTGCTCTGCATATGGTGGTTTGCCCCAACAAACATTGCAAGGGGCATTTCGTAAATATTAGTTTTGTAAGTGGTGTCAAACGTTACCGCATCTCCAAAGTCAGCAAATTCAGCCTGGCTGCTAGCATGACTCCAAAACAAGTTCTTAATGACACCATTTTCATCGAGCTGGGCGTCCCAGTAGAACTTAGGGTTTTGTAACGTGCACTCGTTGACAAACTCCAACAACTTGTTGATGTCATCCGCATTTTCCTTCCGGACATTGGCTGCTTTCCTACATCGGTCAGATGGGAACGTCCTATTTACAACTCCCATTTGTGTCTTCGTGCAAGAAAGCACGAAAAGAAACTTTCATGAAAGCAACATCACAAATTGAAAAATTGGAATAATTTGAAAAAATCACCTGTTCTCAACGTCGCGGGAAGTGAAAGGGATATTGTCTTGGCCTCCATGGAGATCAGATAGAATGCCCATGATACAACTTTGCGGCACGTGACTTACTTGCATAGTGTCCACAAATTGCATCACTGTGTCGTCGCGGTTCTTATGTGCACGCATGTGCTTTACCACCGAAGTGGACGGCGTTAGAGGGTGGTTGTGCTGTAGCTCGGCCACATCATACACCACCGATGAGAGCGCGCCGCCGTCGTAGTTGTGCCTCAGCTTCACATAAGCCTTGGACCTCATTTTCTTGGACGGTCTCCTCTGTTGTCTATCACCATCGGTGACCTTCGACACGTGCTTGCCCTCCCTCGTACAACACACCTCGCGAAACGCTTTGTGTGTGCGGCTCTTCTTGATGTCAAATCCACCGTGACATGCGTATCTCTGGTAGAAGTTGTATGTGTCGTCGTATGTAGGGAAAGCCATGCCTTCGGTGGACACCATATGCGGTGGCACGCTAGGACCCTGTTATATAGCATAGGTAAGTTTTGATAATAGATTATCGATGAAATAGTGGAAACATTATGAAAGTTTAGAAACGATTTCTAAAATTATTGTGGCTGCTGAGTATAACACGTGGATTGCCAGTTAAAAAATGGCTTGTATCCGGTTGCCAATGTATTCATTAGGTATGGGATTCATTCGGTTAATAATACATAAACGTGCATTCGGAATCATTGTGATAGTTAAAAAATAACTTGCGTATTCATGAAGTTCGTGATATGAAACAACCAAATTACGTAGGTGGAGTGGTAGGTTTAGAGATAAAAAATTACTTATAGAACGAAGTTATCGTACATAGATGTTTGTTGAACCTAGTTGTTGGAGAATGGGAGTTGAGTAAGTTTTTAACTATTGAAGGCGATGAGAATTGCTTGTCGTTAAAGAATCAATCGGTGAATGTGATTCATGAATATTAGCAACCATATATAAAATATCAAAATGGTCTATTTTTTGTGGGAGTACTTAGTATCGTCACACGGCGATAGCAACGAAACGAAAAATAATCGTGGCTCGAAAGATTGTGCTGTTGGTGCATCACTATCGCAAACTAGACGTCAAAAATATTGACCATAGAATAAAGCGGGATTGAAGGAGTGGAACTTACATGGCTGTAGACCCTATTCGGCGTGGGGGTTGCAATATCGTTATCATCCAAGCATGGCGGCATCCATCGAGAGGGAGCATCTCTTGCTTGGCGCGTTGGGGTACATTGTTGGTGTGGAGGGCTCGCCGGAGGGCAGCCCGTTGATGAGCGAGGAGTGACTGGCGGACAAGACGACGTGGCGCTGGTGATCTCCAGCGATGCCAT
More
|
||||||||||
| CDS seq | ATGGCATCGCTGGAGATCACCAGCGCCACGTCGTCTTGTCCGCCAGTCACTCCTCGCTCATCAACGGGCTGCCCTCCGGCGAGCCCTCCACACCAACAATGTACCCCAACGCGCCAAGCAAGAGATGCTCCCTCTCGATGGATGCCGCCATGCTTGGATGATAACGATATTGCAACCCCCACGCCGAATAGGGTCTACAGCCATGGTCCTAGCGTGCCACCGCATATGGTGTCCACCGAAGGCATGGCTTTCCCTACATACGACGACACATACAACTTCTACCAGAGATACGCATGTCACGGTGGATTTGACATCAAGAAGAGCCGCACACACAAAGCGTTTCGCGAGGTGTGTTGTACGAGGGAGGGCAAGCACGTGTCGAAGGTCACCGATGGTGATAGACAACAGAGGAGACCGTCCAAGAAAATGAGGTCCAAGGCTTATGTGAAGCTGAGGCACAACTACGACGGCGGCGCGCTCTCATCGGTGGTGTATGATGTGGCCGAGCTACAGCACAACCACCCTCTAACGCCGTCCACTTCGGTGGTAAAGCACATGCGTGCACATAAGAACCGCGACGACACAGTGATGCAATTTGTGGACACTATGCAAGTAAGTCACGTGCCGCAAAGTTGTATCATGGGCATTCTATCTGATCTCCATGGAGGCCAAGACAATATCCCTTTCACTTCCCGCGACGTTGAGAACAGGGGAAGCCGGTGTTGGCTGTACGGTGGACATTTGTTATACAGATGTCGAGACTTTACACCAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAACTTGAGAAGATACCTGCTGCCTACATCGTAAAGAGGTACACAATGAAAGCAAAGAGCGACATGCCCTTTGATAGGCGGGATCGAGAGACAGCTGGACCAAATGGTGTTCAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTGGCTAGGGCAGTGTGCAAATCGAAGGTAGCGTTCGACAGGGCTATGGCTGTTCTGAAGGGATTGCGCAGCCAAGTAGAGGACATACCGTGTGACTCTATTGCGACTGTTGACACCAATACGCAGAATGATGTCGCTGGACGAGTTGAAAACGCCGAAATAAGCAGGGAGCCCCCCCCCCCCCCCCCAAAAAAAGTCAAGAACAAAAGGAAGGACCCGTGA
More
|
||||||||||
| Protein seq | MASLEITSATSSCPPVTPRSSTGCPPASPPHQQCTPTRQARDAPSRWMPPCLDDNDIATPTPNRVYSHGPSVPPHMVSTEGMAFPTYDDTYNFYQRYACHGGFDIKKSRTHKAFREVCCTREGKHVSKVTDGDRQQRRPSKKMRSKAYVKLRHNYDGGALSSVVYDVAELQHNHPLTPSTSVVKHMRAHKNRDDTVMQFVDTMQVSHVPQSCIMGILSDLHGGQDNIPFTSRDVENRGSRCWLYGGHLLYRCRDFTPGMFCTHMLRAFVHVQLEKIPAAYIVKRYTMKAKSDMPFDRRDRETAGPNGVQESYRTNMMMIEAFGVARAVCKSKVAFDRAMAVLKGLRSQVEDIPCDSIATVDTNTQNDVAGRVENAEISREPPPPPPKKVKNKRKDP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0007040 | OsIR64_09g0007040.01 | Chr09 | 12199750 | 12203100 | - | NAM | ||
| CDS seq | ATGGCATCGCTGGAGATCACCAGCGCCACGTCGTCTTGTCCGCCAGTCACTCCTCGCTCATCAACGGGCTGCCCTCCGGCGAGCCCTCCACACCAACAATGTACCCCAACGCGCCAAGCAAGAGATGCTCCCTCTCGATGGATGCCGCCATGCTTGGATGATAACGATATTGCAACCCCCACGCCGAATAGGGTCTACAGCCATGGTCCTAGCGTGCCACCGCATATGGTGTCCACCGAAGGCATGGCTTTCCCTACATACGACGACACATACAACTTCTACCAGAGATACGCATGTCACGGTGGATTTGACATCAAGAAGAGCCGCACACACAAAGCGTTTCGCGAGGTGTGTTGTACGAGGGAGGGCAAGCACGTGTCGAAGGTCACCGATGGTGATAGACAACAGAGGAGACCGTCCAAGAAAATGAGGTCCAAGGCTTATGTGAAGCTGAGGCACAACTACGACGGCGGCGCGCTCTCATCGGTGGTGTATGATGTGGCCGAGCTACAGCACAACCACCCTCTAACGCCGTCCACTTCGGTGGTAAAGCACATGCGTGCACATAAGAACCGCGACGACACAGTGATGCAATTTGTGGACACTATGCAAGTAAGTCACGTGCCGCAAAGTTGTATCATGGGCATTCTATCTGATCTCCATGGAGGCCAAGACAATATCCCTTTCACTTCCCGCGACGTTGAGAACAGGGGAAGCCGGTGTTGGCTGTACGGTGGACATTTGTTATACAGATGTCGAGACTTTACACCAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAACTTGAGAAGATACCTGCTGCCTACATCGTAAAGAGGTACACAATGAAAGCAAAGAGCGACATGCCCTTTGATAGGCGGGATCGAGAGACAGCTGGACCAAATGGTGTTCAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTGGCTAGGGCAGTGTGCAAATCGAAGGTAGCGTTCGACAGGGCTATGGCTGTTCTGAAGGGATTGCGCAGCCAAGTAGAGGACATACCGTGTGACTCTATTGCGACTGTTGACACCAATACGCAGAATGATGTCGCTGGACGAGTTGAAAACGCCGAAATAAGCAGGGAGCCCCCCCCCCCCCCCCCAAAAAAAGTCAAGAACAAAAGGAAGGACCCGTGA
More
|
|||||||
| Protein seq | MASLEITSATSSCPPVTPRSSTGCPPASPPHQQCTPTRQARDAPSRWMPPCLDDNDIATPTPNRVYSHGPSVPPHMVSTEGMAFPTYDDTYNFYQRYACHGGFDIKKSRTHKAFREVCCTREGKHVSKVTDGDRQQRRPSKKMRSKAYVKLRHNYDGGALSSVVYDVAELQHNHPLTPSTSVVKHMRAHKNRDDTVMQFVDTMQVSHVPQSCIMGILSDLHGGQDNIPFTSRDVENRGSRCWLYGGHLLYRCRDFTPGMFCTHMLRAFVHVQLEKIPAAYIVKRYTMKAKSDMPFDRRDRETAGPNGVQESYRTNMMMIEAFGVARAVCKSKVAFDRAMAVLKGLRSQVEDIPCDSIATVDTNTQNDVAGRVENAEISREPPPPPPKKVKNKRKDP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026360 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026100 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010810 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010560 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013500 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002710 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0010490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010780 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003120 | SBH | 0.0 | 0.0 | 0.0 |
