Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_09g0000150 | OGI:09000730 | 12/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr09:200284-203808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGGCTCGCAGGTATATAATAGGTAGAAATAATGCCGATTGGCCGATGTCTTTAACAAAAGAACACATCCCCTGTTTATGTTCGAATTGCAAAATACATTGGCGATAATATGTGAGCATTTGTCTTGCTTGATCAGGGACAGGACAACGCGGACTGGGATGTCGATTTCAAAAGTCTGCCTCGGTAGGATGATATTGTATGGAGTCCTTGAGTCCTAAGGTAAAAAATGTAATGCAGAGTTAGTTTTCTGCTGTAGTAAATGAGCAGAGAAGCAATATATGGTTGCTTGAAAACATCCACCTACATTTTGGTGGCTCCGATTGGGGCCCTGTACGAACAGTGCACAGACAGCTGATCCTTTTTTACGATCATGTTGATGAGGAGATGAGCTACAGGTGCAACCCGTCTGAGCATGAGAAAATCTCACCAAAAAAACAGGGGACCTAAATCTGAAACTGGGTACTGCCGCTTACCTTCCCTCAGCAAGGCCCTCTTCAAACACAGTAGACTTACGTTTTTTGTCTGGTTGCGCCATAGCTAGGACCTGATAAATCATCACTGGTCAGTTAGGTTTGAGAAGAACAAACATATATATATATATATATGGCAACATATCCTATGCACACAGGCCCTCACGTGCACACCAACTAAAAAATGTCACCAAAAAATCTAGAAAAAATCATACACATATTTTCAATTGTATTACACCTAGGGTTAAAATCTTAACGTCAAATTCAATATATTTTAGCCGTAACAAAAAAACAAAAAATCTGACAGTTTTAAGGTTGCAATTTTGTCAGAATTTTATCTTTTTTGTTATTCTCTATGTAGAATGAATTTGAAGATGCGACTTTGCACATAGATGTAATACTATTGAAAGTACATATATGAATTTTCCTAGAATTTTTTGTGATAATTTTTAGTTGGTGTACACGCGAAGGCCTGTGTGCATAGGATACGTTCCCTATATATATATATATTTGTTGCTAGTATAGAGTATAGTGCTAGCCTCTGAAGTTGGTGGCGTTGATGCGTGCTAATCACCATGGCTATCAGTTATGTCCTATGCACAACCAATGTTAACATAAGAAACTAAAGTCGGTTATATGGAATAGAGTGCACAATCCTGCAGATTAATGTATTAGATAATACCTTTGCACCTAGGAGCGTGGATGGTGTGGAAGGTGCCATTGGTTGGAGAGAAGAGCAAACTGTTGTGTGCAGTTGAATTGGATCAGCTGATGCAGAACCATGTTCAGAGGATGTCACAGAACTATCATGGCTGGCCACTGTACTTTTGTGGGCTGGATCTGGTGAGGCAAACATAAGCGAATCCACCTGGTAAGATACGCGGTTTCTTTGCAATGAGCCACGTGACACGCTGGTTCTAATAACATATTGTTTCCCAAAAACTACTTTGATTTCTGGTGGGACTATATCCCGTGCTCCCTAGACAGATGCAACTAAGTTAAGAACAGTGATGCCAATCAATTTGTAGCCAATCTCTCCAAAGAACATAAACTCAGCTGCCTTGGCCTGATGGTTTTCTAAATCTGATGGGTCGCCAGCTATGACAGCTACTCTGTACCTGTTATAGAAGGTAGAAGAAGCAACTCTTATATTGCATTGATCAAACTATAGCATATCAAACAGTTTACTATCTAAGCGAGTTGAAAGCCTTTAGCTGGCAGGAGTACCTTGTTTCAACTGCATTAGTGCTGCACCTCGAACATTTATATGTGCTTCCTTCTCTCCCTGCCCCTCTCTTGTAGGTGCTGCATGCTATGTACCACCAGGCCTCACCAGGGACCAAGTCCTTGATGGCTATGTTGACAGTATAGCTGTTGCCCTGGTTCACACCCGAGAAATAGAGCGTGTAAAAGATGGTATTGGTAACATATGGATGGGAACTGTACAGCGCAATCATCAGGTGTGCTGAGGTATAGTATATTACCAAGGCTTCATGGGGATTTAGATCACATATATCTGAAACCTTTACATGTATAGTCTCTTTCTGACCAAAGCTAGGCTCTATTGCTCTTATGACCTGTGGATTGCCATGAAGGCTTAAAATGCGAAACAAATTAGTGGGCTGTTATGTAGGCTAGGGCAAAATGACTGATGCATAGGAGACATAAACTAAGGGAGATATAGGTTGAATAAAATAGAAGGATGCTTATCTGTATGGAAAGAGCGCAGCAAAGAGATACCTGCTTATGAGAGAGATTGTTTCCTGGATCGGTGCATTGCGATACCACCTACAGACAGTACTACCCTGTAGGGCCAGCTGATCTGGCAAGCATGGAAGATAACATCACCTAAGAGAATACATGGAAATATGCAAATGGGAAAGAAGCGATAATAGGGTAGGAATCGATTTCTTACGGTCTCGGAATTTAACAGTTAACCCAACAAATAAAAAAACAACATGCCCATGGTCCGGTTGCTGCTGCAGGTTTTATGAGTGGAACTGTGTAGCATGGGGACCCCATAATGTAACGACTGCAGTTTCTCTGTAGGCATACAGGAGCATCAACAGCCAGAAAATAATGTACATGACCTAGGCTAGCAGTATTTTTTTTCCAAAAGCAATATGTCAGGCAATAGTGAAGTTCAGTAAAAGAGAAAGAATCTATATGTTTAAAAAGCAATCAACGATGTATATGTGGACAAAGAAGGCTTTTCTGCATCCTAGGTTCGGTTATCAGATTGACAGATACATACCTTCCATTTGTGATGTGGACATTAAGCACAGGTTTCATAACACCTCCACAGGAAACATCCTGAACTGGTCCAATGGCTGTCATGATACCTATGGCATCTACAGGAGTAGCATGAGCATGGACATTTGTACATGAGTAACTGAAGCTAGCAAGCAGGGATTGGACAAAGTAAATAAGGAATGAGATAGATTAATCTAAAGCAAGGAGGGTCACCTGAAAGAATATCTTTCATGTAAGCACGACCCCTGAGCTCATCGAAAGAAAGAACCTTATAGGCATGAGATGGGAATGTGGACGGCGCCTCAGTGTCTTTTGTAATGGTTGTGTGGGCAGTGAACTTTGCCATCACCATCCGATCAACAGGTTTGTATTGAGGGCATGCCTCGGCAACTTCAAAATACTTGATGTAATAGACAGAATCCTCCTCCATCAATGGCTTGAACTGAGAAACATGGCGGCCTGGGATTTGTGCATCTATCATATCCCCCCTGTTGATGTTCGAACATATACGTCGCAAGCAGCATGGAGGTAAAGAAATGCATGATCATGTGGCTAGTGTTATACCTGCTCATCAAGGAGGACTAAATCAAGACGGAGTATCTTGTCAGGTTCATTTGGTGCAGTGAACTCCGAGAAGCGAGTGACTCGCACTCGGACCTGCCAACGGTGCGACTCTTGTGTGACATCCTTTAGCATAGTGTAATTCATATGCAACAGAAGAATAAAGTGCTATATAGGTCAGAGGGAAACTATAACAACGATATCTCGCAGGATATGAACATGTAAAGGTGGAATTGCTG
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| CDS seq | ATGAGCAGGGGGGATATGATAGATGCACAAATCCCAGGCCGCCATGTTTCTCAGTTCAAGCCATTGATGGAGGAGGATTCTGTCTATTACATCAAGTATTTTGAAGTTGCCGAGGCATGCCCTCAATACAAACCTGTTGATCGGATGGTGATGGCAAAGTTCACTGCCCACACAACCATTACAAAAGACACTGAGGCGCCGTCCACATTCCCATCTCATGCCTATAAGGTTCTTTCTTTCGATGAGCTCAGGGGTCGTGCTTACATGAAAGATATTCTTTCAGATGCCATAGGTATCATGACAGCCATTGGACCAGTTCAGGATGTTTCCTGTGGAGGTGTTATGAAACCTGTGCTTAATGTCCACATCACAAATGGAAGTCGTTACATTATGGGGTCCCCATGCTACACAGTTCCACTCATAAAACCTGCAGCAGCAACCGGACCATGGGCATATCAGCTGGCCCTACAGGGTAGTACTGTCTGTAGGTGGTATCGCAATGCACCGATCCAGGAAACAATCTCTCTCATAAGCAGCCTTCATGGCAATCCACAGGTCATAAGAGCAATAGAGCCTAGCTTTGGTCAGAAAGAGACTATACATGTAAAGGTTTCAGATATATGTGATCTAAATCCCCATGAAGCCTTGGGCAACAGCTATACTGTCAACATAGCCATCAAGGACTTGGTCCCTGGTGAGGCCTGGTGGTACATAGCATGCAGCACCTACAAGAGAGGGGCAGGGAGAGAAGGAAGCACATATAAATGTTCGAGGTGCAGCACTAATGCAGTTGAAACAAGGTACAGAGTAGCTGTCATAGCTGGCGACCCATCAGATTTAGAAAACCATCAGGCCAAGGCAGCTGAGTTTATGTTCTTTGGAGAGATTGGCTACAAATTGATTGGCATCACTGTTCTTAACTTAGTTGCATCTGTCTAG
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| Protein seq | MSRGDMIDAQIPGRHVSQFKPLMEEDSVYYIKYFEVAEACPQYKPVDRMVMAKFTAHTTITKDTEAPSTFPSHAYKVLSFDELRGRAYMKDILSDAIGIMTAIGPVQDVSCGGVMKPVLNVHITNGSRYIMGSPCYTVPLIKPAAATGPWAYQLALQGSTVCRWYRNAPIQETISLISSLHGNPQVIRAIEPSFGQKETIHVKVSDICDLNPHEALGNSYTVNIAIKDLVPGEAWWYIACSTYKRGAGREGSTYKCSRCSTNAVETRYRVAVIAGDPSDLENHQAKAAEFMFFGEIGYKLIGITVLNLVASV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0000150 | OsIR64_09g0000150.01 | Chr09 | 200284 | 203808 | - | NAM | ||
| CDS seq | ATGTTTGCCTCACCAGATCCAGCCCACAAAAGTACAGTGGCCAGCCATGATAGTTCTGTGACATCCTCTGAACATGGTTCTGCATCAGCTGATCCAATTCAACTGCACACAACAGTTTGCTCTTCTCTCCAACCAATGGCACCTTCCACACCATCCACGCTCCTAGGTGCAAAGGTCCTAGCTATGGCGCAACCAGACAAAAAACGTAAGTCTACTGTGTTTGAAGAGGGCCTTGCTGAGGGAAGCTCATCTCCTCATCAACATGATCGTAAAAAAGGATCAGCTGTCTGTGCACTGTTCGTACAGGGCCCCAATCGGAGCCACCAAAATGACTCAAGGACTCCATACAATATCATCCTACCGAGGCAGACTTTTGAAATCGACATCCCAGTCCGCGTTGTCCTGTCCCTGATCAAGCAAGACAAATGCTCACATATTATCGCCAATGTATTTTGCAATTCGAACATAAACAGGGGATGTGTTCTTTTGTTAAAGACATCGGCCAATCGGCATTATTTCTACCTATTATATACCTGCGAGCCCTAA
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| Protein seq | MFASPDPAHKSTVASHDSSVTSSEHGSASADPIQLHTTVCSSLQPMAPSTPSTLLGAKVLAMAQPDKKRKSTVFEEGLAEGSSSPHQHDRKKGSAVCALFVQGPNRSHQNDSRTPYNIILPRQTFEIDIPVRVVLSLIKQDKCSHIIANVFCNSNINRGCVLLLKTSANRHYFYLLYTCEP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0000150 | OsIR64_09g0000150.02 | Chr09 | 200418 | 203808 | - | NAM | ||
| CDS seq | ATGAGCAGGGGGGATATGATAGATGCACAAATCCCAGGCCGCCATGTTTCTCAGTTCAAGCCATTGATGGAGGAGGATTCTGTCTATTACATCAAGTATTTTGAAGTTGCCGAGGCATGCCCTCAATACAAACCTGTTGATCGGATGGTGATGGCAAAGTTCACTGCCCACACAACCATTACAAAAGACACTGAGGCGCCGTCCACATTCCCATCTCATGCCTATAAGGTTCTTTCTTTCGATGAGCTCAGGGGTCGTGCTTACATGAAAGATATTCTTTCAGATGCCATAGGTATCATGACAGCCATTGGACCAGTTCAGGATGTTTCCTGTGGAGGTGTTATGAAACCTGTGCTTAATGTCCACATCACAAATGGAAGTCGTTACATTATGGGGTCCCCATGCTACACAGTTCCACTCATAAAACCTGCAGCAGCAACCGGACCATGGGCATATCAGCTGGCCCTACAGGGTAGTACTGTCTGTAGGTGGTATCGCAATGCACCGATCCAGGAAACAATCTCTCTCATAAGCAGCCTTCATGGCAATCCACAGGTCATAAGAGCAATAGAGCCTAGCTTTGGTCAGAAAGAGACTATACATGTAAAGGTTTCAGATATATGTGATCTAAATCCCCATGAAGCCTTGGGCAACAGCTATACTGTCAACATAGCCATCAAGGACTTGGTCCCTGGTGAGGCCTGGTGGTACATAGCATGCAGCACCTACAAGAGAGGGGCAGGGAGAGAAGGAAGCACATATAAATGTTCGAGGTGCAGCACTAATGCAGTTGAAACAAGGTACAGAGTAGCTGTCATAGCTGGCGACCCATCAGATTTAGAAAACCATCAGGCCAAGGCAGCTGAGTTTATGTTCTTTGGAGAGATTGGCTACAAATTGATTGGCATCACTGTTCTTAACTTAGTTGCATCTGTCTAG
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| Protein seq | MSRGDMIDAQIPGRHVSQFKPLMEEDSVYYIKYFEVAEACPQYKPVDRMVMAKFTAHTTITKDTEAPSTFPSHAYKVLSFDELRGRAYMKDILSDAIGIMTAIGPVQDVSCGGVMKPVLNVHITNGSRYIMGSPCYTVPLIKPAAATGPWAYQLALQGSTVCRWYRNAPIQETISLISSLHGNPQVIRAIEPSFGQKETIHVKVSDICDLNPHEALGNSYTVNIAIKDLVPGEAWWYIACSTYKRGAGREGSTYKCSRCSTNAVETRYRVAVIAGDPSDLENHQAKAAEFMFFGEIGYKLIGITVLNLVASV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0000150 | OsIR64_09g0000150.04 | Chr09 | 200284 | 203231 | - | NAM | ||
| CDS seq | ATGTTTGCCTCACCAGATCCAGCCCACAAAAGTACAGTGGCCAGCCATGATAGTTCTGTGACATCCTCTGAACATGGTTCTGCATCAGCTGATCCAATTCAACTGCACACAACAGTTTGCTCTTCTCTCCAACCAATGGCACCTTCCACACCATCCACGCTCCTAGGTGCAAAGGTCCTAGCTATGGCGCAACCAGACAAAAAACGTAAGTCTACTGTGTTTGAAGAGGGCCTTGCTGAGGGAAGCTCATCTCCTCATCAACATGATCGTAAAAAAGGATCAGCTGTCTGTGCACTGTTCGTACAGGGCCCCAATCGGAGCCACCAAAATGACTCAAGGACTCCATACAATATCATCCTACCGAGGCAGACTTTTGAAATCGACATCCCAGTCCGCGTTGTCCTGTCCCTGATCAAGCAAGACAAATGCTCACATATTATCGCCAATGTATTTTGCAATTCGAACATAAACAGGGGATGTGTTCTTTTGTTAAAGACATCGGCCAATCGGCATTATTTCTACCTATTATATACCTGCGAGCCCTAA
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| Protein seq | MFASPDPAHKSTVASHDSSVTSSEHGSASADPIQLHTTVCSSLQPMAPSTPSTLLGAKVLAMAQPDKKRKSTVFEEGLAEGSSSPHQHDRKKGSAVCALFVQGPNRSHQNDSRTPYNIILPRQTFEIDIPVRVVLSLIKQDKCSHIIANVFCNSNINRGCVLLLKTSANRHYFYLLYTCEP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_09g0000150 | OsIR64_09g0000150.03 | Chr09 | 200418 | 203808 | - | NAM | ||
| CDS seq | ATGAGCAGGGGGGATATGATAGATGCACAAATCCCAGGCCGCCATGTTTCTCAGTTCAAGCCATTGATGGAGGAGGATTCTGTCTATTACATCAAGTATTTTGAAGTTGCCGAGGCATGCCCTCAATACAAACCTGTTGATCGGATGGTGATGGCAAAGTTCACTGCCCACACAACCATTACAAAAGACACTGAGGCGCCGTCCACATTCCCATCTCATGCCTATAAGGTTCTTTCTTTCGATGAGCTCAGGGGTCGTGCTTACATGAAAGATATTCTTTCAGATGCCATAGGTATCATGACAGCCATTGGACCAGTTCAGGATGTTTCCTGTGGAGGTGTTATGAAACCTGTGCTTAATGTCCACATCACAAATGGAAGCCTTCATGGCAATCCACAGGTCATAAGAGCAATAGAGCCTAGCTTTGGTCAGAAAGAGACTATACATGTAAAGGTTTCAGATATATGTGATCTAAATCCCCATGAAGCCTTGGGCAACAGCTATACTGTCAACATAGCCATCAAGGACTTGGTCCCTGGTGAGGCCTGGTGGTACATAGCATGCAGCACCTACAAGAGAGGGGCAGGGAGAGAAGGAAGCACATATAAATGTTCGAGGTGCAGCACTAATGCAGTTGAAACAAGGTACAGAGTAGCTGTCATAGCTGGCGACCCATCAGATTTAGAAAACCATCAGGCCAAGGCAGCTGAGTTTATGTTCTTTGGAGAGATTGGCTACAAATTGATTGGCATCACTGTTCTTAACTTAGTTGCATCTGTCTAG
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| Protein seq | MSRGDMIDAQIPGRHVSQFKPLMEEDSVYYIKYFEVAEACPQYKPVDRMVMAKFTAHTTITKDTEAPSTFPSHAYKVLSFDELRGRAYMKDILSDAIGIMTAIGPVQDVSCGGVMKPVLNVHITNGSLHGNPQVIRAIEPSFGQKETIHVKVSDICDLNPHEALGNSYTVNIAIKDLVPGEAWWYIACSTYKRGAGREGSTYKCSRCSTNAVETRYRVAVIAGDPSDLENHQAKAAEFMFFGEIGYKLIGITVLNLVASV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 202787 | 203010 | - | OsIR64_09g0000150.04,OsIR64_09g0000150.01 | OsIR64_09g0000150.02,OsIR64_09g0000150.04,OsIR64_09g0000150.01 | All |
| RI | Chr09 | 202496 | 202798 | - | OsIR64_09g0000150.01 | OsIR64_09g0000150.04,OsIR64_09g0000150.01 | All |
| SE | Chr09 | 202351 | 203010 | - | OsIR64_09g0000150.01 | OsIR64_09g0000150.03,OsIR64_09g0000150.01 | All |
| SE | Chr09 | 200829 | 201438 | - | OsIR64_09g0000150.02,OsIR64_09g0000150.03 | OsIR64_09g0000150.02,OsIR64_09g0000150.04,OsIR64_09g0000150.03,OsIR64_09g0000150.01 | All |
| A5 | Chr09 | 202577 | 202714 | - | OsIR64_09g0000150.04 | OsIR64_09g0000150.02,OsIR64_09g0000150.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.035372 | 0.118506 | 1.763566 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001400 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0000160 | RBH | 19.451227 | 5.594347 | 26.897795 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0003300 | RBH | 0 | 0.4901255 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0000140 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000140 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000140 | RBH | 0.0 | 0.0 | 0.0 |
